Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009320

Physical Location & Seq

Genomic Coordinates Forward (+)

28095065 .. 28098092

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1203100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTTCAGATCTCTCTCGTTATCCGCTAACACAAAAACAGAGAAAACAAATCCGACTGGAAATTCGCAAATGGCGCTTCTCAACGTCTCCATCTGCTCTTCCAAACTCCCCCCAAAACCCTCTATCTCTCTCCCCCATAAACTTCACCCTTCCCGCCAACACGCCCCTCTCTCCGCCGGCTATCCTCCGCCCCAGGTTGTAAAGAATCGCCTGGAAACTTCTGGAAGCTCTGTGTTGTCGCTGGGAGAGTCCGTCTGTAAGGCGAGCCTGGTCGCTCTGCTCTCGGCTTCTCTGTTCGTAGCCAATCCTGCATTCGCCTTTAAGGGTGGGGGTCCGTATGGTGCGGAGGTGACTAGGGGCCAGGACCTCACCGGCAAGGACTTTAGCGGCAAGACTTTGATCAAGCAAGACTTCAAAACGTCGATATTGAGGCAAGCGAATTTCAAGGGCGCCAAGTTATTAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGGGCTGATCTTTCTGATGCAGATCTAAGAGCTGTGGACTTTTCTTTGGCCAATGTGACAAAGGCGAATCTGAGCAACGCTAACTTAGAAGGTGCAGTAGCCACAGGCAACACATCTTTCAAAGGGTCAAATATTACAGGTGCAGACTTCACAGATGTGCCTCTGAGAGAAGATCAACGGGAATATCTTTGCAAAGTTGCCGATGGGGTCAATCCGACAACTGGAAACCCAACACGTGAAACCTTGCTTTGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

250

Amino Acids

26.19

Weight (kDa)

9.03

Isoelectric Point (pI)

18.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide_4	PF13599	137 - 214	6.5e-09	Pentapeptide repeat region
Pentapeptide	PF00805	141 - 179	7.6e-10	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	177 - 216	8.5e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44920 AT2G44920
fragaria_vesca	FvH4_7g23000 FvH4_7g23000 FvH4_7g23000
malus_domestica	MD07G1203100.v1.1
prunus_persica	Prupe.2G239300_v2.0.a1 Prupe.2G239300_v2.0.a1
pyrus_communis	pycom07g19000
rosa_chinensis	RchiOBHm_Chr1g0368241
rosa_laevigata	RLG00000027227
rosa_multiflora	Rmu_sc0006033.1_g000009 Rmu_sc0021728.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288740
rosa_rugosa	Rorug01G0339600 Rorug01G0339700
rosa_samantha	Rh1AG347000 Rh1BG310000 Rh1CG325400 Rh1DG341800
rosa_wichuraiana	Rw0G001030 Rw1G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	449
AciI	CCGC	6 cut(s)	24, 154, 174, 188, 344, 387
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	2 cut(s)	61, 439
AcvI	CACGTG	1 cut(s)	728
AcyI	GRCGYC	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	3 cut(s)	415, 445, 613
AjnI	CCWGG	4 cut(s)	192, 210, 267, 360
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	3 cut(s)	228, 471, 524
AluI	AGCT	3 cut(s)	228, 471, 524
Alw26I	GTCTC	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	2 cut(s)	358, 540
ApoI	RAATTY	2 cut(s)	61, 439
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
AspLEI	GCGC	2 cut(s)	76, 452
AspS9I	GGNCC	3 cut(s)	332, 358, 364
AsuHPI	GGTGA	3 cut(s)	137, 361, 361
AsuNHI	GCTAGC	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	332, 364
BalI	TGGCCA	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	728
BccI	CCATC	2 cut(s)	98, 689
BciT130I	CCWGG	4 cut(s)	194, 212, 269, 362
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	354, 468
BfoI	RGCGCY	2 cut(s)	77, 453
BglII	AGATCT	2 cut(s)	8, 514
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	4 cut(s)	194, 212, 269, 362
Bme18I	GGWCC	2 cut(s)	332, 364
BmgT120I	GGNCC	3 cut(s)	332, 358, 364
BmiI	GGNNCC	3 cut(s)	333, 359, 451
BmrFI	CCNGG	4 cut(s)	194, 212, 269, 362
BmsI	GCATC	2 cut(s)	469, 499
BmtI	GCTAGC	1 cut(s)	471
BsaAI	YACGTR	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	713
Bse118I	RCCGGY	2 cut(s)	176, 371
Bse1I	ACTGG	2 cut(s)	61, 718
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	4 cut(s)	194, 212, 269, 362
BseDI	CCNNGG	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	713
BseMII	CTCAG	2 cut(s)	554, 647
BseNI	ACTGG	2 cut(s)	61, 718
BseYI	CCCAGC	1 cut(s)	241
BsgI	GTGCAG	2 cut(s)	606, 654
BshFI	GGCC	2 cut(s)	360, 542
BshNI	GGYRCC	1 cut(s)	449
BsiSI	CCGG	2 cut(s)	177, 372
BslI	CCNNNNNNNGG	1 cut(s)	713
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	360, 542
Bsp143I	GATC	5 cut(s)	8, 399, 499, 514, 664
BspACI	CCGC	6 cut(s)	24, 154, 174, 188, 344, 387
BspANI	GGCC	2 cut(s)	360, 542
BspCNI	CTCAG	2 cut(s)	555, 648
BspLI	GGNNCC	3 cut(s)	333, 359, 451
BspOI	GCTAGC	1 cut(s)	471
BspQI	GCTCTTC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	449
BsrFI	RCCGGY	2 cut(s)	176, 371
BsrI	ACTGG	2 cut(s)	61, 718
BssAI	RCCGGY	2 cut(s)	176, 371
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	5 cut(s)	8, 399, 499, 514, 664
BssNI	GRCGYC	1 cut(s)	450
Bst2UI	CCWGG	4 cut(s)	194, 212, 269, 362
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	4 cut(s)	178, 265, 435, 469
BstDEI	CTNAG	4 cut(s)	518, 563, 577, 656
BstH2I	RGCGCY	2 cut(s)	77, 453
BstHHI	GCGC	2 cut(s)	76, 452
BstKTI	GATC	5 cut(s)	11, 402, 502, 517, 667
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	5 cut(s)	8, 399, 499, 514, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 308
BstNI	CCWGG	4 cut(s)	194, 212, 269, 362
BstSCI	CCNGG	4 cut(s)	192, 210, 267, 360
BstX2I	RGATCY	2 cut(s)	8, 514
BstYI	RGATCY	2 cut(s)	8, 514
BsuRI	GGCC	2 cut(s)	360, 542
Cac8I	GCNNGC	4 cut(s)	178, 265, 435, 469
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	2 cut(s)	76, 452
Cfr10I	RCCGGY	2 cut(s)	176, 371
Cfr13I	GGNCC	3 cut(s)	332, 358, 364
DdeI	CTNAG	4 cut(s)	518, 563, 577, 656
DinI	GGCGCC	1 cut(s)	451
DpnI	GATC	5 cut(s)	10, 401, 501, 516, 666
DpnII	GATC	5 cut(s)	8, 399, 499, 514, 664
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	2 cut(s)	163, 177
Eco47I	GGWCC	2 cut(s)	332, 364
Eco72I	CACGTG	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	4 cut(s)	192, 210, 267, 360
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	91
FaiI	YATR	2 cut(s)	138, 339
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FauI	CCCGC	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	388
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	2 cut(s)	354, 468
GlaI	GCGC	2 cut(s)	75, 451
GluI	GCNGC	1 cut(s)	388
GsaI	CCCAGC	1 cut(s)	245
HaeII	RGCGCY	2 cut(s)	77, 453
HaeIII	GGCC	2 cut(s)	360, 542
HapII	CCGG	2 cut(s)	177, 372
HhaI	GCGC	2 cut(s)	76, 452
Hin1I	GRCGYC	1 cut(s)	450
Hin6I	GCGC	2 cut(s)	74, 450
HinP1I	GCGC	2 cut(s)	74, 450
HinfI	GANTC	3 cut(s)	205, 248, 559
HpaII	CCGG	2 cut(s)	177, 372
HphI	GGTGA	3 cut(s)	137, 361, 361
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	6 cut(s)	8, 54, 508, 564, 657, 708
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	159, 575
HpyCH4IV	ACGT	3 cut(s)	84, 419, 727
HpyCH4V	TGCA	6 cut(s)	311, 512, 587, 635, 684, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 308
HpyF3I	CTNAG	4 cut(s)	518, 563, 577, 656
HpySE526I	ACGT	3 cut(s)	84, 419, 727
Hsp92I	GRCGYC	1 cut(s)	450
HspAI	GCGC	2 cut(s)	74, 450
KasI	GGCGCC	1 cut(s)	449
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	5 cut(s)	8, 399, 499, 514, 664
LguI	GCTCTTC	1 cut(s)	103
LweI	GCATC	2 cut(s)	469, 499
MaeI	CTAG	2 cut(s)	354, 468
MaeII	ACGT	3 cut(s)	84, 419, 727
MaeIII	GTNAC	2 cut(s)	349, 547
MalI	GATC	5 cut(s)	10, 401, 501, 516, 666
MboI	GATC	5 cut(s)	8, 399, 499, 514, 664
MboII	GAAGA	2 cut(s)	90, 674
MflI	RGATCY	2 cut(s)	8, 514
MlsI	TGGCCA	1 cut(s)	542
MluCI	AATT	3 cut(s)	61, 439, 745
MluNI	TGGCCA	1 cut(s)	542
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	77, 731
MnlI	CCTC	7 cut(s)	130, 177, 195, 340, 377, 423, 663
Mox20I	TGGCCA	1 cut(s)	542
MroNI	GCCGGC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	542
MseI	TTAA	3 cut(s)	321, 488, 748
MslI	CAYNNNNRTG	1 cut(s)	647
Msp20I	TGGCCA	1 cut(s)	542
MspI	CCGG	2 cut(s)	177, 372
MspR9I	CCNGG	4 cut(s)	194, 212, 269, 362
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	4 cut(s)	194, 212, 269, 362
MwoI	GCNNNNNNNGC	2 cut(s)	73, 308
NaeI	GCCGGC	1 cut(s)	178
NarI	GGCGCC	1 cut(s)	450
NdeII	GATC	5 cut(s)	8, 399, 499, 514, 664
NgoMIV	GCCGGC	1 cut(s)	176
NheI	GCTAGC	1 cut(s)	467
NlaIV	GGNNCC	3 cut(s)	333, 359, 451
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	2 cut(s)	349, 547
OliI	CACNNNNGTG	1 cut(s)	647
PciSI	GCTCTTC	1 cut(s)	103
PctI	GAATGC	1 cut(s)	311
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	205, 559
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	1 cut(s)	256
PluTI	GGCGCC	1 cut(s)	453
PmaCI	CACGTG	1 cut(s)	728
PmlI	CACGTG	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	728
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	4 cut(s)	192, 210, 267, 360
PspCI	CACGTG	1 cut(s)	728
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	4 cut(s)	192, 210, 267, 360
PspN4I	GGNNCC	3 cut(s)	333, 359, 451
PspPI	GGNCC	3 cut(s)	332, 358, 364
PspPPI	RGGWCCY	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	8, 514
RseI	CAYNNNNRTG	1 cut(s)	647
SapI	GCTCTTC	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	321, 488, 748
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	5 cut(s)	8, 399, 499, 514, 664
Sau96I	GGNCC	3 cut(s)	332, 358, 364
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	4 cut(s)	194, 212, 269, 362
SfaNI	GCATC	2 cut(s)	469, 499
SfoI	GGCGCC	1 cut(s)	451
SinI	GGWCC	2 cut(s)	332, 364
SmiMI	CAYNNNNRTG	1 cut(s)	647
Sse9I	AATT	3 cut(s)	61, 439, 745
SsiI	CCGC	6 cut(s)	24, 154, 174, 188, 344, 387
SspDI	GGCGCC	1 cut(s)	449
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	2 cut(s)	354, 468
StyD4I	CCNGG	4 cut(s)	192, 210, 267, 360
TaiI	ACGT	3 cut(s)	87, 422, 730
TaqI	TCGA	1 cut(s)	422
TasI	AATT	3 cut(s)	61, 439, 745
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	2 cut(s)	205, 559
Tru1I	TTAA	3 cut(s)	321, 488, 748
Tru9I	TTAA	3 cut(s)	321, 488, 748
TseFI	GTSAC	2 cut(s)	349, 547
Tsp45I	GTSAC	2 cut(s)	349, 547
TspGWI	ACGGA	2 cut(s)	241, 324
VpaK11BI	GGWCC	2 cut(s)	332, 364
XapI	RAATTY	2 cut(s)	61, 439
XspI	CTAG	2 cut(s)	354, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.