Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009320

Physical Location & Seq

Genomic Coordinates Forward (+)

18043739 .. 18046584

Gene Structure 2846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23000.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGCTTCTCAACGTCTCCATGTGCTCCAAATTCCCAAACCCTTCCCGCCAACACCTCTCCCTCTCCGGCTCCCCTCCTCGGCCGCCCCACGTACTCAAGACTCCACCCGAAGCTTCCAGAAACCTTGTCGTCCAAATCGGAGATTCCGTTTGCAAGGCCGGCCTGATCGCCGTGCTCTCCGCCAGCCCCGCGCTCGCCTATATCGGTGGAGGTCCGTATGGTTCGGAGGTGACTAGGGGCCAGGATCTTAGCGGGAAGGACTTCAGCGGATTGACTTTGGTTAAACAAGACTTCAAAACGTCCATATTGCGGCAGGCGAATTTTCACGGCGCAAAGTTGTTAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGGGCTGATCTTTCTGATGCTGATCTAAGAGGTGCAGACTTTTCCTTGGCCAATGTGACAAAGGTTAATTTGAGCAATGCTAACTTGGAAGGTGCATTTACTACAGGCAATACATCTTTCAAAGGATCAACTATCACAGGTGCAGACTTCACAGATGTGCCTTTGAGAGATGATCAGCGGGAATATCTTTGCAAAATTGCTGAGGGGGTAAATCCAACAACCGGAAATGAAACACGTGATACCTTGTTTTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

211

Amino Acids

22.15

Weight (kDa)

6.28

Isoelectric Point (pI)

20.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide_4	PF13599	89 - 157	1.7e-07	Pentapeptide repeat region
Pentapeptide	PF00805	102 - 140	1.4e-11	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	117 - 156	3.3e-11	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44920 AT2G44920
fragaria_vesca	FvH4_7g23000 FvH4_7g23000 FvH4_7g23000
malus_domestica	MD07G1203100.v1.1
prunus_persica	Prupe.2G239300_v2.0.a1 Prupe.2G239300_v2.0.a1
pyrus_communis	pycom07g19000
rosa_chinensis	RchiOBHm_Chr1g0368241
rosa_laevigata	RLG00000027227
rosa_multiflora	Rmu_sc0006033.1_g000009 Rmu_sc0021728.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288740
rosa_rugosa	Rorug01G0339600 Rorug01G0339700
rosa_samantha	Rh1AG347000 Rh1BG310000 Rh1CG325400 Rh1DG341800
rosa_wichuraiana	Rw0G001030 Rw1G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	194
AciI	CCGC	8 cut(s)	49, 86, 183, 192, 255, 270, 313, 553
AclWI	GGATC	2 cut(s)	255, 508
AcoI	YGGCCR	2 cut(s)	83, 423
AcsI	RAATTY	2 cut(s)	32, 322
AcuI	CTGAAG	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	611
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	3 cut(s)	81, 312, 596
AflIII	ACRYGT	1 cut(s)	608
AgsI	TTSAA	2 cut(s)	298, 496
AjnI	CCWGG	1 cut(s)	243
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	2 cut(s)	116, 354
AluI	AGCT	2 cut(s)	116, 354
Alw21I	GWGCWC	2 cut(s)	29, 180
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	255, 508
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	5 cut(s)	83, 159, 163, 241, 423
ApoI	RAATTY	2 cut(s)	32, 322
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	3 cut(s)	7, 196, 335
AspS9I	GGNCC	2 cut(s)	215, 241
AsuHPI	GGTGA	1 cut(s)	244
AsuNHI	GCTAGC	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	425
BbrPI	CACGTG	1 cut(s)	611
Bbv12I	GWGCWC	2 cut(s)	29, 180
BbvCI	CCTCAGC	1 cut(s)	576
BceAI	ACGGC	2 cut(s)	158, 346
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	237, 351
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	86, 314
BlsI	GCNGC	2 cut(s)	87, 315
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	215, 241
BmiI	GGNNCC	2 cut(s)	73, 242
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	352, 382
BmtI	GCTAGC	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	83
BsaAI	YACGTR	2 cut(s)	94, 611
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	80, 420
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 312, 596
Bse118I	RCCGGY	1 cut(s)	161
Bse3DI	GCAATG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	80, 420
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	3 cut(s)	81, 312, 596
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	567
BseRI	GAGGAG	1 cut(s)	69
BseX3I	CGGCCG	1 cut(s)	83
BsgI	GTGCAG	2 cut(s)	429, 537
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	5 cut(s)	85, 161, 165, 243, 425
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	29, 180
BsiSI	CCGG	3 cut(s)	69, 162, 597
BslI	CCNNNNNNNGG	3 cut(s)	81, 312, 596
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	5 cut(s)	85, 161, 165, 243, 425
Bsp1286I	GDGCHC	2 cut(s)	29, 180
Bsp143I	GATC	6 cut(s)	168, 247, 382, 397, 500, 547
BspACI	CCGC	8 cut(s)	49, 86, 183, 192, 255, 270, 313, 553
BspANI	GGCC	5 cut(s)	85, 161, 165, 243, 425
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	73, 242
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	255, 508
BsrDI	GCAATG	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	80, 420
BssMI	GATC	6 cut(s)	168, 247, 382, 397, 500, 547
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	245
BstBAI	YACGTR	2 cut(s)	94, 611
BstC8I	GCNNGC	5 cut(s)	163, 187, 198, 318, 352
BstDEI	CTNAG	3 cut(s)	251, 401, 576
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 196, 335
BstKTI	GATC	6 cut(s)	171, 250, 385, 400, 503, 550
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	6 cut(s)	168, 247, 382, 397, 500, 547
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 191
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BstZI	CGGCCG	1 cut(s)	83
BsuRI	GGCC	5 cut(s)	85, 161, 165, 243, 425
Cac8I	GCNNGC	5 cut(s)	163, 187, 198, 318, 352
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	3 cut(s)	7, 196, 335
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	215, 241
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	1 cut(s)	22
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	3 cut(s)	251, 401, 576
DpnI	GATC	6 cut(s)	170, 249, 384, 399, 502, 549
DpnII	GATC	6 cut(s)	168, 247, 382, 397, 500, 547
EaeI	YGGCCR	2 cut(s)	83, 423
EagI	CGGCCG	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	172
EclXI	CGGCCG	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	215
Eco52I	CGGCCG	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	250
Eco72I	CACGTG	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	1 cut(s)	25
FaiI	YATR	4 cut(s)	23, 204, 222, 308
FatI	CATG	1 cut(s)	21
FauI	CCCGC	4 cut(s)	56, 199, 248, 546
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	86, 314
FseI	GGCCGGCC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	86, 314
FspBI	CTAG	2 cut(s)	237, 351
GlaI	GCGC	3 cut(s)	6, 195, 334
GluI	GCNGC	2 cut(s)	86, 314
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	5 cut(s)	85, 161, 165, 243, 425
HapII	CCGG	3 cut(s)	69, 162, 597
HhaI	GCGC	3 cut(s)	7, 196, 335
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	3 cut(s)	5, 194, 333
HinP1I	GCGC	3 cut(s)	5, 194, 333
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	2 cut(s)	103, 146
HpaII	CCGG	3 cut(s)	69, 162, 597
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	143, 229, 391
Hpy188III	TCNNGA	2 cut(s)	100, 120
HpyAV	CCTTC	3 cut(s)	54, 253, 458
HpyCH4IV	ACGT	4 cut(s)	15, 93, 302, 610
HpyCH4V	TGCA	6 cut(s)	156, 410, 470, 518, 567, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 191
HpyF3I	CTNAG	3 cut(s)	251, 401, 576
HpySE526I	ACGT	4 cut(s)	15, 93, 302, 610
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	3 cut(s)	5, 194, 333
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	6 cut(s)	168, 247, 382, 397, 500, 547
LmnI	GCTCC	2 cut(s)	32, 77
LweI	GCATC	2 cut(s)	352, 382
MaeI	CTAG	2 cut(s)	237, 351
MaeII	ACGT	4 cut(s)	15, 93, 302, 610
MaeIII	GTNAC	2 cut(s)	232, 430
MalI	GATC	6 cut(s)	170, 249, 384, 399, 502, 549
MboI	GATC	6 cut(s)	168, 247, 382, 397, 500, 547
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	29, 180
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	4 cut(s)	32, 322, 442, 570
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	8 cut(s)	68, 74, 87, 90, 206, 223, 398, 571
Mox20I	TGGCCA	1 cut(s)	425
MroNI	GCCGGC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	3 cut(s)	285, 371, 441
MslI	CAYNNNNRTG	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	270, 553
MspI	CCGG	3 cut(s)	69, 162, 597
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	162, 191
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	6 cut(s)	168, 247, 382, 397, 500, 547
NgoMIV	GCCGGC	1 cut(s)	161
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	73, 242
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	232, 430
OliI	CACNNNNGTG	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	87, 315
PleI	GAGTC	1 cut(s)	97
PmaCI	CACGTG	1 cut(s)	611
PmlI	CACGTG	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	97
Ppu21I	YACGTR	2 cut(s)	94, 611
Psp6I	CCWGG	1 cut(s)	243
PspCI	CACGTG	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	73, 242
PspPI	GGNCC	2 cut(s)	215, 241
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	247
RigI	GGCCGGCC	1 cut(s)	165
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	3 cut(s)	285, 371, 441
SatI	GCNGC	2 cut(s)	86, 314
Sau3AI	GATC	6 cut(s)	168, 247, 382, 397, 500, 547
Sau96I	GGNCC	2 cut(s)	215, 241
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	29, 180
SfaNI	GCATC	2 cut(s)	352, 382
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	32, 322, 442, 570
SsiI	CCGC	8 cut(s)	49, 86, 183, 192, 255, 270, 313, 553
SspMI	CTAG	2 cut(s)	237, 351
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	420
TaiI	ACGT	4 cut(s)	18, 96, 305, 613
TasI	AATT	4 cut(s)	32, 322, 442, 570
TauI	GCSGC	2 cut(s)	88, 316
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	285, 371, 441
Tru9I	TTAA	3 cut(s)	285, 371, 441
TseFI	GTSAC	2 cut(s)	232, 430
Tsp45I	GTSAC	2 cut(s)	232, 430
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	2 cut(s)	139, 207
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	32, 322
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	2 cut(s)	237, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.