Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006033.1

Orthogroup ID

OG0009320

Physical Location & Seq

Genomic Coordinates Forward (+)

47934 .. 50163

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006033.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgtgctccaaaatcccaaacccttcccgccaacacctctccctctccggctatcctccgccccaggtactcaagactcagtccgaagcttccagaaaccttgcgctgcaaatcggagaatccgtctgcaaggccagcctgatcgccgcgctctctgcttctctgttcgcggccgaccctgcgctcgcctatatcggtggaggtccctacggttcagaggtgactagggggcaggaccttaccgggaaggacttcagcggcttgactttggtcaagcaggacttcaaaacgtccatattgaggcaggcgaattttcatgccgcaaagttgttaggagctagcttttttgatgctgatttaacaggggctgatctttctgatgctgatctaagaggtgcagacttttccttggccaatgtgacaaaggtaaatttgagcaatgctaacttggaaggtgcatttactacaggcaacacttctttcaaaggatcaactatcacaggtgcagacttcacagacgttcctttgagagatgatcagcgggaatatctttgcaaaattgctgatggggtaaatccaacaaccggaaatgaaacacgtgaaaccttgttttgcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

206

Amino Acids

21.77

Weight (kDa)

5.38

Isoelectric Point (pI)

16.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44920 AT2G44920
fragaria_vesca	FvH4_7g23000 FvH4_7g23000 FvH4_7g23000
malus_domestica	MD07G1203100.v1.1
prunus_persica	Prupe.2G239300_v2.0.a1 Prupe.2G239300_v2.0.a1
pyrus_communis	pycom07g19000
rosa_chinensis	RchiOBHm_Chr1g0368241
rosa_laevigata	RLG00000027227
rosa_multiflora	Rmu_sc0006033.1_g000009 Rmu_sc0021728.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288740
rosa_rugosa	Rorug01G0339600 Rorug01G0339700
rosa_samantha	Rh1AG347000 Rh1BG310000 Rh1CG325400 Rh1DG341800
rosa_wichuraiana	Rw0G001030 Rw1G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	149, 170
AciI	CCGC	7 cut(s)	28, 59, 147, 170, 258, 321, 541
AclWI	GGATC	1 cut(s)	496
AcoI	YGGCCR	2 cut(s)	171, 411
AcsI	RAATTY	2 cut(s)	310, 430
AcuI	CTGAAG	1 cut(s)	238
AcvI	CACGTG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	300, 584
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	2 cut(s)	286, 484
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	89, 338, 342
AluI	AGCT	3 cut(s)	89, 338, 342
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	496
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	132, 171, 411
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	2 cut(s)	310, 430
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	3 cut(s)	106, 151, 184
AspS9I	GGNCC	2 cut(s)	203, 235
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	232
AsuNHI	GCTAGC	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	203, 235
BalI	TGGCCA	1 cut(s)	413
BbrPI	CACGTG	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	65
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	2 cut(s)	225, 339
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	5 cut(s)	107, 147, 171, 259, 321
BlsI	GCNGC	5 cut(s)	108, 148, 172, 260, 322
Bme1390I	CCNGG	2 cut(s)	65, 244
Bme18I	GGWCC	2 cut(s)	203, 235
BmgT120I	GGNCC	2 cut(s)	203, 235
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	65, 244
BmsI	GCATC	2 cut(s)	340, 370
BmtI	GCTAGC	1 cut(s)	342
BoxI	GACNNNNGTC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	63, 408
BsaWI	WCCGGW	1 cut(s)	584
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 584
Bse3DI	GCAATG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	63, 408
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	300, 584
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	92
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	93
BsgI	GTGCAG	2 cut(s)	417, 525
Bsh1236I	CGCG	2 cut(s)	149, 170
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	134, 173, 413
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	3 cut(s)	48, 243, 585
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	300, 584
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	134, 173, 413
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	141, 370, 385, 488, 535
BspACI	CCGC	7 cut(s)	28, 59, 147, 170, 258, 321, 541
BspANI	GGCC	3 cut(s)	134, 173, 413
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	2 cut(s)	149, 170
BspLI	GGNNCC	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	496
BsrDI	GCAATG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	63, 408
BssMI	GATC	5 cut(s)	141, 370, 385, 488, 535
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	136, 186, 306, 340
BstDEI	CTNAG	2 cut(s)	78, 389
BstFNI	CGCG	2 cut(s)	149, 170
BstHHI	GCGC	3 cut(s)	106, 151, 184
BstKTI	GATC	5 cut(s)	144, 373, 388, 491, 538
BstMBI	GATC	5 cut(s)	141, 370, 385, 488, 535
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 155, 179
BstNI	CCWGG	1 cut(s)	65
BstPAI	GACNNNNGTC	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	63, 242
BstSFI	CTRYAG	1 cut(s)	465
BstUI	CGCG	2 cut(s)	149, 170
BstV1I	GCAGC	1 cut(s)	93
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	134, 173, 413
Cac8I	GCNNGC	4 cut(s)	136, 186, 306, 340
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	3 cut(s)	106, 151, 184
Cfr13I	GGNCC	2 cut(s)	203, 235
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	1 cut(s)	317
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	78, 389
DpnI	GATC	5 cut(s)	143, 372, 387, 490, 537
DpnII	GATC	5 cut(s)	141, 370, 385, 488, 535
EaeI	YGGCCR	2 cut(s)	171, 411
EagI	CGGCCG	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	203, 235
Eco52I	CGGCCG	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	238
Eco72I	CACGTG	1 cut(s)	599
EcoO109I	RGGNCCY	2 cut(s)	203, 235
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	1 cut(s)	320
FaiI	YATR	3 cut(s)	192, 296, 318
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	316
FauI	CCCGC	2 cut(s)	35, 534
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	5 cut(s)	107, 147, 171, 259, 321
Fsp4HI	GCNGC	5 cut(s)	107, 147, 171, 259, 321
FspBI	CTAG	2 cut(s)	225, 339
GlaI	GCGC	3 cut(s)	105, 150, 183
GluI	GCNGC	5 cut(s)	107, 147, 171, 259, 321
HaeIII	GGCC	3 cut(s)	134, 173, 413
HapII	CCGG	3 cut(s)	48, 243, 585
HhaI	GCGC	3 cut(s)	106, 151, 184
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	3 cut(s)	104, 149, 182
HinP1I	GCGC	3 cut(s)	104, 149, 182
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	2 cut(s)	76, 119
HpaII	CCGG	3 cut(s)	48, 243, 585
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	85, 116, 217, 379
Hpy188III	TCNNGA	2 cut(s)	73, 93
HpyAV	CCTTC	3 cut(s)	33, 241, 446
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	3 cut(s)	290, 519, 598
HpyCH4V	TGCA	7 cut(s)	109, 129, 398, 458, 506, 555, 615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 155, 179
HpyF3I	CTNAG	2 cut(s)	78, 389
HpySE526I	ACGT	3 cut(s)	290, 519, 598
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	3 cut(s)	104, 149, 182
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	141, 370, 385, 488, 535
LmnI	GCTCC	2 cut(s)	11, 335
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	2 cut(s)	340, 370
MaeI	CTAG	2 cut(s)	225, 339
MaeII	ACGT	3 cut(s)	290, 519, 598
MaeIII	GTNAC	2 cut(s)	220, 418
MalI	GATC	5 cut(s)	143, 372, 387, 490, 537
MboI	GATC	5 cut(s)	141, 370, 385, 488, 535
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	3 cut(s)	310, 430, 558
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	7 cut(s)	47, 53, 66, 194, 211, 294, 386
Mox20I	TGGCCA	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	413
MspA1I	CMGCKG	2 cut(s)	258, 541
MspI	CCGG	3 cut(s)	48, 243, 585
MspR9I	CCNGG	2 cut(s)	65, 244
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	149, 170
MwoI	GCNNNNNNNGC	3 cut(s)	135, 155, 179
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	5 cut(s)	141, 370, 385, 488, 535
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	220, 418
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	119
PflFI	GACNNNGTC	1 cut(s)	79
PkrI	GCNGC	5 cut(s)	108, 148, 172, 260, 322
PleI	GAGTC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	599
PpuMI	RGGWCCY	2 cut(s)	203, 235
PshAI	GACNNNNGTC	1 cut(s)	269
Psp5II	RGGWCCY	2 cut(s)	203, 235
Psp6I	CCWGG	1 cut(s)	63
PspCI	CACGTG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	2 cut(s)	203, 235
PspPPI	RGGWCCY	2 cut(s)	203, 235
PstNI	CAGNNNCTG	1 cut(s)	368
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	5 cut(s)	107, 147, 171, 259, 321
Sau3AI	GATC	5 cut(s)	141, 370, 385, 488, 535
Sau96I	GGNCC	2 cut(s)	203, 235
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	65, 244
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	340, 370
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	203, 235
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	3 cut(s)	310, 430, 558
SsiI	CCGC	7 cut(s)	28, 59, 147, 170, 258, 321, 541
SspMI	CTAG	2 cut(s)	225, 339
StyD4I	CCNGG	2 cut(s)	63, 242
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	3 cut(s)	293, 522, 601
TasI	AATT	3 cut(s)	310, 430, 558
TauI	GCSGC	4 cut(s)	149, 173, 261, 323
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TseFI	GTSAC	2 cut(s)	220, 418
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	2 cut(s)	220, 418
TspDTI	ATGAA	2 cut(s)	305, 606
TspGWI	ACGGA	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	203, 235
XapI	RAATTY	2 cut(s)	310, 430
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	2 cut(s)	225, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.