Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009320

Physical Location & Seq

Genomic Coordinates Forward (+)

58885410 .. 58888800

Gene Structure 3391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTCTTTGCACCTAGCCATCGAGCAATTTGCTCTACTCAATCCGAAGCTTCCAGAAACCTTGCGCTGCAAATCGGAGAATCCGTCTGCAAGGCCAGCCTGATCGCCGCGCTCTCTGCTTATCTGTTCGCGGCCGACCCTGCGCTCGCCTATATCGGTGGAGGTCCCTACGGTTCAGAGGTGACTAGGGGGCAGGACCTTACCGGGAAGGACTTCAGCGGCTTGACTTTGGTCAAGCAGGACTTCAAAACGTCCATATTGAGGCAGGCAAATTTTCATGCCGCAAAGTTGTTAGGAGCTAGCTTTTTTGATGCTGATTTAACAGGGGCTGATCTTTCTGATGCTGATCTAAGAGGTGCAGACTTTTCCTTGGCCAATGTGACAAAGGTAAATTTGAGCAATGCTAACTTGGAAGGTGCATTTACTACAGGCAACACATCTTTCAAAGGATCAACTATCACAGGTGCAGACTTCACAGACGTTCCTTTGAGAGATGATCAGCGGGAATATCTTTGCAAAATTGCTGATGGGGTAAATCCAACAACCGGAAATGAAACACGTGAAACCTTGTTTTGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

193

Amino Acids

20.44

Weight (kDa)

4.98

Isoelectric Point (pI)

14.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide_4	PF13599	81 - 158	1.1e-08	Pentapeptide repeat region
Pentapeptide	PF00805	85 - 123	1.3e-10	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	100 - 139	3e-11	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44920 AT2G44920
fragaria_vesca	FvH4_7g23000 FvH4_7g23000 FvH4_7g23000
malus_domestica	MD07G1203100.v1.1
prunus_persica	Prupe.2G239300_v2.0.a1 Prupe.2G239300_v2.0.a1
pyrus_communis	pycom07g19000
rosa_chinensis	RchiOBHm_Chr1g0368241
rosa_laevigata	RLG00000027227
rosa_multiflora	Rmu_sc0006033.1_g000009 Rmu_sc0021728.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288740
rosa_rugosa	Rorug01G0339600 Rorug01G0339700
rosa_samantha	Rh1AG347000 Rh1BG310000 Rh1CG325400 Rh1DG341800
rosa_wichuraiana	Rw0G001030 Rw1G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	110, 131
AciI	CCGC	5 cut(s)	108, 131, 219, 282, 502
AclWI	GGATC	1 cut(s)	457
AcoI	YGGCCR	2 cut(s)	132, 372
AcsI	RAATTY	2 cut(s)	271, 391
AcuI	CTGAAG	1 cut(s)	199
AcvI	CACGTG	1 cut(s)	560
AfiI	CCNNNNNNNGG	2 cut(s)	261, 545
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	247, 445
AluBI	AGCT	3 cut(s)	50, 299, 303
AluI	AGCT	3 cut(s)	50, 299, 303
AlwI	GGATC	1 cut(s)	457
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	3 cut(s)	93, 132, 372
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	271, 391
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	3 cut(s)	67, 112, 145
AspS9I	GGNCC	2 cut(s)	164, 196
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	193
AsuNHI	GCTAGC	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	164, 196
BalI	TGGCCA	1 cut(s)	374
BbrPI	CACGTG	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	27, 521
BcgI	CGANNNNNNTGC	2 cut(s)	12, 46
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	3 cut(s)	15, 186, 300
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	5 cut(s)	68, 108, 132, 220, 282
BlsI	GCNGC	5 cut(s)	69, 109, 133, 221, 283
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	2 cut(s)	164, 196
BmgT120I	GGNCC	2 cut(s)	164, 196
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	2 cut(s)	301, 331
BmtI	GCTAGC	1 cut(s)	303
BoxI	GACNNNNGTC	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 545
Bse3DI	GCAATG	1 cut(s)	406
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	369
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	261, 545
BseMI	GCAATG	1 cut(s)	406
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	2 cut(s)	378, 486
Bsh1236I	CGCG	2 cut(s)	110, 131
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	3 cut(s)	95, 134, 374
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	204, 546
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	261, 545
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	3 cut(s)	95, 134, 374
Bsp143I	GATC	5 cut(s)	102, 331, 346, 449, 496
BspACI	CCGC	5 cut(s)	108, 131, 219, 282, 502
BspANI	GGCC	3 cut(s)	95, 134, 374
BspFNI	CGCG	2 cut(s)	110, 131
BspLI	GGNNCC	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	5 cut(s)	102, 331, 346, 449, 496
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	97, 147, 267, 301
BstDEI	CTNAG	1 cut(s)	350
BstFNI	CGCG	2 cut(s)	110, 131
BstHHI	GCGC	3 cut(s)	67, 112, 145
BstKTI	GATC	5 cut(s)	105, 334, 349, 452, 499
BstMBI	GATC	5 cut(s)	102, 331, 346, 449, 496
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 116, 140
BstPAI	GACNNNNGTC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	2 cut(s)	110, 131
BstV1I	GCAGC	1 cut(s)	54
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	95, 134, 374
Cac8I	GCNNGC	4 cut(s)	97, 147, 267, 301
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	3 cut(s)	67, 112, 145
Cfr13I	GGNCC	2 cut(s)	164, 196
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	5 cut(s)	104, 333, 348, 451, 498
DpnII	GATC	5 cut(s)	102, 331, 346, 449, 496
EaeI	YGGCCR	2 cut(s)	132, 372
EagI	CGGCCG	1 cut(s)	132
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	164, 196
Eco52I	CGGCCG	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	199
Eco72I	CACGTG	1 cut(s)	560
EcoO109I	RGGNCCY	2 cut(s)	164, 196
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	281
FaiI	YATR	3 cut(s)	153, 257, 279
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	495
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	5 cut(s)	68, 108, 132, 220, 282
Fsp4HI	GCNGC	5 cut(s)	68, 108, 132, 220, 282
FspBI	CTAG	3 cut(s)	15, 186, 300
GlaI	GCGC	3 cut(s)	66, 111, 144
GluI	GCNGC	5 cut(s)	68, 108, 132, 220, 282
HaeIII	GGCC	3 cut(s)	95, 134, 374
HapII	CCGG	2 cut(s)	204, 546
HhaI	GCGC	3 cut(s)	67, 112, 145
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	3 cut(s)	65, 110, 143
HinP1I	GCGC	3 cut(s)	65, 110, 143
HindIII	AAGCTT	1 cut(s)	48
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	2 cut(s)	204, 546
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	4 cut(s)	46, 77, 178, 340
Hpy188III	TCNNGA	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	202, 407
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	3 cut(s)	251, 480, 559
HpyCH4V	TGCA	8 cut(s)	11, 70, 90, 359, 419, 467, 516, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 116, 140
HpyF3I	CTNAG	1 cut(s)	350
HpySE526I	ACGT	3 cut(s)	251, 480, 559
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	3 cut(s)	65, 110, 143
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	5 cut(s)	102, 331, 346, 449, 496
LmnI	GCTCC	1 cut(s)	296
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	301, 331
MaeI	CTAG	3 cut(s)	15, 186, 300
MaeII	ACGT	3 cut(s)	251, 480, 559
MaeIII	GTNAC	2 cut(s)	181, 379
MalI	GATC	5 cut(s)	104, 333, 348, 451, 498
MboI	GATC	5 cut(s)	102, 331, 346, 449, 496
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	4 cut(s)	27, 271, 391, 519
MluNI	TGGCCA	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	4 cut(s)	155, 172, 255, 347
Mox20I	TGGCCA	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	2 cut(s)	219, 502
MspI	CCGG	2 cut(s)	204, 546
MspR9I	CCNGG	1 cut(s)	205
MvnI	CGCG	2 cut(s)	110, 131
MwoI	GCNNNNNNNGC	3 cut(s)	96, 116, 140
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	5 cut(s)	102, 331, 346, 449, 496
NheI	GCTAGC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	181, 379
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	69, 109, 133, 221, 283
PmaCI	CACGTG	1 cut(s)	560
PmlI	CACGTG	1 cut(s)	560
Ppu21I	YACGTR	1 cut(s)	560
PpuMI	RGGWCCY	2 cut(s)	164, 196
PshAI	GACNNNNGTC	1 cut(s)	230
Psp5II	RGGWCCY	2 cut(s)	164, 196
PspCI	CACGTG	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	164, 196
PspPPI	RGGWCCY	2 cut(s)	164, 196
PstNI	CAGNNNCTG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	5 cut(s)	68, 108, 132, 220, 282
Sau3AI	GATC	5 cut(s)	102, 331, 346, 449, 496
Sau96I	GGNCC	2 cut(s)	164, 196
ScrFI	CCNGG	1 cut(s)	205
SfaNI	GCATC	2 cut(s)	301, 331
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	164, 196
Sse9I	AATT	4 cut(s)	27, 271, 391, 519
SsiI	CCGC	5 cut(s)	108, 131, 219, 282, 502
SspMI	CTAG	3 cut(s)	15, 186, 300
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	3 cut(s)	254, 483, 562
TaqI	TCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	27, 271, 391, 519
TauI	GCSGC	4 cut(s)	110, 134, 222, 284
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseFI	GTSAC	2 cut(s)	181, 379
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	2 cut(s)	181, 379
TspDTI	ATGAA	2 cut(s)	266, 567
TspGWI	ACGGA	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	164, 196
XapI	RAATTY	2 cut(s)	271, 391
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	3 cut(s)	15, 186, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.