Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Forward (+)

18582697 .. 18584127

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGACGTCTATGGCTTATCTTCACCAGACTTACTTCGAATCGACGACCTTCTTGATTTCTCCAACGAAGACATCTTCTCCGCTTCTTCTTCCGGTGGTTCCACCGCCGCTACTTCCTCTTCTTCTTTCCCTCCTCCTCAAAACCCTAGTTTCCACCACCACCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGCGTTCCCAGTGATGACGCAGCTCATCTTGAATGGCTTTCGCAATTCGTGGACGATTCTTTCGCTGATTTTCCGGCGAATCCATTAGGAGGAACTATGACTTCTGTCAAAACTGAAACTTCCTTTCCGGGGAAACCAAGAAGCAAACGATCAAGAGCTCCTGCTCCTTTCGCCGGAACATGGTCTCCGATGCCACTGGAATCCGAGCATCAGCAGCTTCACTCCGCCGCCAAATTCAAGCCAAAGAAAGAACAATCCGGCGGAGGAGGAGGAGGAGGAGGAAGACATCAGTCATCGTCATCGGAGACTACGGAAGGAGGAGGAATGAGGAGATGTACTCACTGTGCATCGGAGAAAACGCCACAGTGGAGGACAGGACCACTTGGACCTAAAACACTATGTAACGCTTGTGGAGTCCGGTTTAAATCCGGTAGACTTGTACCGGAATATAGACCGGCTTCGAGTCCTACTTTTGTTTTGACTCAGCATTCAAACTCTCACCGGAAAGTGATGGAGCTTCGACGGCAGAAAGAAGTTATGAGACAACCACAACAAGTTCAACTTCATCACCACCACCACCCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

264

Amino Acids

28.86

Weight (kDa)

8.31

Isoelectric Point (pI)

65.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	181 - 215	1e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	640
AciI	CCGC	7 cut(s)	81, 105, 108, 177, 432, 435, 468
AcsI	RAATTY	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	2 cut(s)	544, 648
AfiI	CCNNNNNNNGG	4 cut(s)	296, 336, 380, 387
AgsI	TTSAA	4 cut(s)	239, 445, 699, 767
AloI	GAACNNNNNNTCC	2 cut(s)	376, 408
AluBI	AGCT	4 cut(s)	230, 365, 424, 724
AluI	AGCT	4 cut(s)	230, 365, 424, 724
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	3 cut(s)	396, 506, 742
ApeKI	GCWGC	2 cut(s)	227, 421
ApoI	RAATTY	1 cut(s)	440
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspS9I	GGNCC	2 cut(s)	584, 593
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	3 cut(s)	15, 698, 767
AsuII	TTCGAA	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	584, 593
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	75, 496
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	239, 433
BccI	CCATC	2 cut(s)	171, 712
BceAI	ACGGC	1 cut(s)	746
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	3 cut(s)	396, 506, 742
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	4 cut(s)	108, 228, 422, 435
BlsI	GCNGC	4 cut(s)	109, 229, 423, 436
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	2 cut(s)	584, 593
BmgT120I	GGNCC	2 cut(s)	584, 593
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	387, 424, 563
BmuI	ACTGGG	1 cut(s)	210
BoxI	GACNNNNGTC	2 cut(s)	311, 496
BpiI	GAAGAC	2 cut(s)	75, 496
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
Bpu14I	TTCGAA	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	5 cut(s)	92, 624, 635, 649, 708
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 376, 406
Bsc4I	CCNNNNNNNGG	4 cut(s)	296, 336, 380, 387
Bse118I	RCCGGY	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	216, 408
BseDI	CCNNGG	1 cut(s)	335
BseLI	CCNNNNNNNGG	4 cut(s)	296, 336, 380, 387
BseMII	CTCAG	1 cut(s)	704
BseNI	ACTGG	2 cut(s)	216, 408
BseRI	GAGGAG	9 cut(s)	123, 126, 486, 489, 492, 495, 498, 540, 550
BseXI	GCAGC	2 cut(s)	239, 433
BsiHKAI	GWGCWC	1 cut(s)	367
BslI	CCNNNNNNNGG	4 cut(s)	296, 336, 380, 387
BsmAI	GTCTC	3 cut(s)	396, 506, 742
BsmI	GAATGC	1 cut(s)	694
Bso31I	GGTCTC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	181, 356
BspACI	CCGC	7 cut(s)	81, 105, 108, 177, 432, 435, 468
BspCNI	CTCAG	1 cut(s)	703
BspLI	GGNNCC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	661
BsrI	ACTGG	2 cut(s)	216, 408
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	181, 356
BssNI	GRCGYC	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	551, 573
Bst6I	CTCTTC	1 cut(s)	124
BstACI	GRCGYC	1 cut(s)	6
BstBI	TTCGAA	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	690
BstKTI	GATC	2 cut(s)	184, 359
BstMAI	GTCTC	3 cut(s)	396, 506, 742
BstMBI	GATC	2 cut(s)	181, 356
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 421, 730
BstPAI	GACNNNNGTC	2 cut(s)	311, 496
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	239, 433
BstV2I	GAAGAC	2 cut(s)	75, 496
BtsIMutI	CAGTG	4 cut(s)	223, 401, 547, 578
Cfr10I	RCCGGY	1 cut(s)	661
Cfr13I	GGNCC	2 cut(s)	584, 593
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	543, 647
CspCI	CAANNNNNGTGG	2 cut(s)	188, 223
CviAII	CATG	1 cut(s)	387
CviJI	RGCY	8 cut(s)	15, 230, 244, 365, 424, 448, 665, 724
CviKI_1	RGCY	8 cut(s)	15, 230, 244, 365, 424, 448, 665, 724
CviQI	GTAC	2 cut(s)	543, 647
DdeI	CTNAG	1 cut(s)	690
DpnI	GATC	2 cut(s)	183, 358
DpnII	GATC	2 cut(s)	181, 356
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
EciI	GGCGGA	3 cut(s)	166, 421, 483
Ecl136II	GAGCTC	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	584, 593
Eco53kI	GAGCTC	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	367
FaeI	CATG	1 cut(s)	390
FaiI	YATR	6 cut(s)	12, 305, 388, 607, 657, 746
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FatI	CATG	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	108, 228, 422, 435
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	4 cut(s)	108, 228, 422, 435
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	4 cut(s)	108, 228, 422, 435
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	390
HinfI	GANTC	7 cut(s)	39, 263, 286, 407, 621, 670, 688
HphI	GGTGA	3 cut(s)	15, 698, 767
Hpy166II	GTNNAC	2 cut(s)	259, 641
Hpy188I	TCNGA	4 cut(s)	396, 412, 511, 559
Hpy188III	TCNNGA	3 cut(s)	53, 236, 360
Hpy8I	GTNNAC	2 cut(s)	259, 641
Hpy99I	CGWCG	2 cut(s)	47, 732
HpyAV	CCTTC	4 cut(s)	59, 180, 202, 515
HpyCH4III	ACNGT	2 cut(s)	551, 573
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 421, 730
HpyF3I	CTNAG	1 cut(s)	690
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	181, 356
LmnI	GCTCC	3 cut(s)	370, 376, 721
Lsp1109I	GCAGC	2 cut(s)	239, 433
LweI	GCATC	3 cut(s)	387, 424, 563
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	2 cut(s)	183, 358
MboI	GATC	2 cut(s)	181, 356
MboII	GAAGA	8 cut(s)	12, 67, 78, 80, 81, 111, 114, 501
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	2 cut(s)	251, 440
MlyI	GAGTC	3 cut(s)	630, 679, 682
MmeI	TCCRAC	1 cut(s)	87
MseI	TTAA	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	694
MwoI	GCNNNNNNNGC	3 cut(s)	377, 421, 730
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	181, 356
NlaIII	CATG	1 cut(s)	390
NlaIV	GGNNCC	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	694
PfeI	GAWTC	4 cut(s)	39, 263, 286, 407
PkrI	GCNGC	4 cut(s)	109, 229, 423, 436
PleI	GAGTC	3 cut(s)	629, 678, 682
PpsI	GAGTC	3 cut(s)	629, 678, 682
PshAI	GACNNNNGTC	2 cut(s)	311, 496
Psp124BI	GAGCTC	1 cut(s)	367
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	584, 593
RsaI	GTAC	2 cut(s)	544, 648
RsaNI	GTAC	2 cut(s)	543, 647
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	4 cut(s)	108, 228, 422, 435
Sau3AI	GATC	2 cut(s)	181, 356
Sau96I	GGNCC	2 cut(s)	584, 593
SchI	GAGTC	3 cut(s)	630, 679, 682
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	7 cut(s)	9, 51, 232, 367, 426, 598, 726
SfaNI	GCATC	3 cut(s)	387, 424, 563
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	2 cut(s)	584, 593
Sse9I	AATT	2 cut(s)	251, 440
SsiI	CCGC	7 cut(s)	81, 105, 108, 177, 432, 435, 468
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	551, 573
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	4 cut(s)	37, 42, 668, 727
TasI	AATT	2 cut(s)	251, 440
TatI	WGTACW	1 cut(s)	542
TauI	GCSGC	2 cut(s)	110, 437
TfiI	GAWTC	4 cut(s)	39, 263, 286, 407
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	4 cut(s)	223, 408, 554, 578
TseI	GCWGC	2 cut(s)	227, 421
TspDTI	ATGAA	1 cut(s)	761
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	4 cut(s)	223, 408, 554, 578
VpaK11BI	GGWCC	2 cut(s)	584, 593
XapI	RAATTY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.