Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Forward (+)

19313169 .. 19314259

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G135400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGGACGTGTACGGAGGAGGAGCATCTGCTTCCTCAGCCCAACAACAGCAAGACTACTTTCCCATTGACGACCTTCTCGACCTGTCAAACGACGACCTTTTCTCTTCCTCCACTTCCTCCACCGACTCCATTGACCTCCACCCTCCGCCGCCACCTCCGCACCTCCACGTCAGCTCCACCGTCTTCAACCCCACCCCCGCCACCGACTTCACCAACGACCTCTGTGTACCCAGTGATGACGTGGCGGAATTGGAGTGGTTGTCGCGCTTCGTGGACGACTCTTTCACCGACTTCCCCACCACCAACGTCTTCGGCTCCGCGTCCTTCCCAAACGACACGTCGTCCTTGTTTCCGAGCCGGGTTCGCACCAATCGCTCAAAATGGGATGGCCCACCCGAGCCCAGCGACTCACGGGCGAAGCCCAAGAGAGAGCCATCGGAAGCTTCTCCGTCGCCCTCCAAGCCGCGCCGGTGCGCGCACTGCGCCTCGGAGAAGACGCCGCAGTGGCGGGCGGGTCCAATGGGCCCCAAGACGCTGTGCAACGCGTGTGGTGTCCGATTCAAGTCGGGTCGGCTGGTGCCCGAGTACCGACCCGCGGCAAGCCCAACGTTCGTGCTGACTCAGCACTCCAACTCGCACCGGAAGGTTCTGGAGCTCCGTCGCCAGAAAGAGGCTTCTCAGCAACAGCAACCCGAAGAGCAACACCAGCCGAAGCAGCAATTCTATCTTCACCGGGATGAGTATCAAGTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

253

Amino Acids

28.12

Weight (kDa)

5.6

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AccII	CGCG	6 cut(s)	268, 323, 469, 479, 548, 599
AclI	AACGTT	1 cut(s)	611
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	3 cut(s)	14, 231, 590
AfiI	CCNNNNNNNGG	2 cut(s)	598, 673
AflIII	ACRYGT	3 cut(s)	9, 339, 546
AgsI	TTSAA	2 cut(s)	190, 565
AhdI	GACNNNNNGTC	1 cut(s)	343
AjiI	CACGTC	4 cut(s)	10, 172, 244, 342
AluBI	AGCT	3 cut(s)	177, 446, 658
AluI	AGCT	3 cut(s)	177, 446, 658
Alw21I	GWGCWC	1 cut(s)	660
Ama87I	CYCGRG	2 cut(s)	398, 584
AoxI	GGCC	2 cut(s)	391, 526
ApaI	GGGCCC	1 cut(s)	530
ApeKI	GCWGC	1 cut(s)	718
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AspLEI	GCGC	5 cut(s)	270, 471, 479, 481, 488
AspS9I	GGNCC	4 cut(s)	392, 518, 526, 527
AsuC2I	CCSGG	2 cut(s)	362, 737
AsuHPI	GGTGA	3 cut(s)	205, 280, 725
AvaI	CYCGRG	2 cut(s)	398, 584
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	2 cut(s)	530, 585
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	3 cut(s)	405, 530, 660
BbsI	GAAGAC	3 cut(s)	178, 304, 503
Bbv12I	GWGCWC	1 cut(s)	660
BbvCI	CCTCAGC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	730
BccI	CCATC	2 cut(s)	383, 445
BcnI	CCSGG	2 cut(s)	362, 737
BglI	GCCNNNNNGGC	1 cut(s)	508
BisI	GCNGC	5 cut(s)	152, 467, 503, 600, 719
BlsI	GCNGC	5 cut(s)	153, 468, 504, 601, 720
Bme1390I	CCNGG	2 cut(s)	362, 737
Bme18I	GGWCC	1 cut(s)	518
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmeT110I	CYCGRG	2 cut(s)	398, 584
BmgBI	CACGTC	4 cut(s)	10, 172, 244, 342
BmgT120I	GGNCC	4 cut(s)	392, 518, 526, 527
BmiI	GGNNCC	5 cut(s)	319, 519, 528, 529, 582
BmrFI	CCNGG	2 cut(s)	362, 737
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	3 cut(s)	178, 304, 503
BpmI	CTGGAG	1 cut(s)	674
Bpu10I	CCTNAGC	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	362, 737
BsaBI	GATNNNNATC	1 cut(s)	744
BsaHI	GRCGYC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	489, 597
BsaWI	WCCGGW	1 cut(s)	642
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 161, 191, 248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 673
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	489, 597
BseGI	GGATG	2 cut(s)	394, 745
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	2 cut(s)	598, 673
BseMII	CTCAG	3 cut(s)	51, 638, 695
BseNI	ACTGG	1 cut(s)	234
BsePI	GCGCGC	1 cut(s)	477
BseRI	GAGGAG	2 cut(s)	33, 36
BseSI	GKGCMC	2 cut(s)	530, 585
BseXI	GCAGC	1 cut(s)	730
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	6 cut(s)	268, 323, 469, 479, 548, 599
BshFI	GGCC	2 cut(s)	393, 528
BshNI	GGYRCC	1 cut(s)	580
BsiHKAI	GWGCWC	1 cut(s)	660
BsiHKCI	CYCGRG	2 cut(s)	398, 584
BsiSI	CCGG	4 cut(s)	361, 472, 643, 736
BslI	CCNNNNNNNGG	2 cut(s)	598, 673
BsnI	GGCC	2 cut(s)	393, 528
BsoBI	CYCGRG	2 cut(s)	398, 584
Bsp120I	GGGCCC	1 cut(s)	526
Bsp1286I	GDGCHC	4 cut(s)	405, 530, 585, 660
BspANI	GGCC	2 cut(s)	393, 528
BspCNI	CTCAG	3 cut(s)	50, 637, 694
BspFNI	CGCG	6 cut(s)	268, 323, 469, 479, 548, 599
BspLI	GGNNCC	5 cut(s)	319, 519, 528, 529, 582
BspQI	GCTCTTC	1 cut(s)	693
BspT107I	GGYRCC	1 cut(s)	580
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	489, 597
BssHII	GCGCGC	1 cut(s)	477
BssNI	GRCGYC	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	112, 693
BstACI	GRCGYC	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	479, 513, 604
BstDEI	CTNAG	3 cut(s)	37, 624, 681
BstDSI	CCRYGG	1 cut(s)	597
BstF5I	GGATG	2 cut(s)	394, 745
BstFNI	CGCG	6 cut(s)	268, 323, 469, 479, 548, 599
BstHHI	GCGC	5 cut(s)	270, 471, 479, 481, 488
BstSCI	CCNGG	2 cut(s)	360, 735
BstSLI	GKGCMC	2 cut(s)	530, 585
BstUI	CGCG	6 cut(s)	268, 323, 469, 479, 548, 599
BstV1I	GCAGC	1 cut(s)	730
BstV2I	GAAGAC	3 cut(s)	178, 304, 503
BsuRI	GGCC	2 cut(s)	393, 528
BtgI	CCRYGG	1 cut(s)	597
BtrI	CACGTC	4 cut(s)	10, 172, 244, 342
BtsCI	GGATG	2 cut(s)	394, 745
BtsI	GCAGTG	2 cut(s)	481, 512
BtsIMutI	CAGTG	3 cut(s)	241, 481, 512
Cac8I	GCNNGC	3 cut(s)	479, 513, 604
CfoI	GCGC	5 cut(s)	270, 471, 479, 481, 488
Cfr10I	RCCGGY	1 cut(s)	471
Cfr13I	GGNCC	4 cut(s)	392, 518, 526, 527
Cfr42I	CCGCGG	1 cut(s)	600
CseI	GACGC	3 cut(s)	312, 508, 544
Csp6I	GTAC	3 cut(s)	13, 230, 589
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviQI	GTAC	3 cut(s)	13, 230, 589
DdeI	CTNAG	3 cut(s)	37, 624, 681
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	112, 693
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	2 cut(s)	112, 693
EciI	GGCGGA	2 cut(s)	138, 263
Ecl136II	GAGCTC	1 cut(s)	658
Eco24I	GRGCYC	3 cut(s)	405, 530, 660
Eco47I	GGWCC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	658
Eco88I	CYCGRG	2 cut(s)	398, 584
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	527
EcoT38I	GRGCYC	3 cut(s)	405, 530, 660
FauI	CCCGC	4 cut(s)	208, 504, 508, 604
Fnu4HI	GCNGC	5 cut(s)	152, 467, 503, 600, 719
FokI	GGATG	2 cut(s)	401, 752
FriOI	GRGCYC	3 cut(s)	405, 530, 660
Fsp4HI	GCNGC	5 cut(s)	152, 467, 503, 600, 719
GlaI	GCGC	5 cut(s)	269, 470, 478, 480, 487
GluI	GCNGC	5 cut(s)	152, 467, 503, 600, 719
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	2 cut(s)	393, 528
HapII	CCGG	4 cut(s)	361, 472, 643, 736
HgaI	GACGC	3 cut(s)	312, 508, 544
HhaI	GCGC	5 cut(s)	270, 471, 479, 481, 488
Hin1I	GRCGYC	1 cut(s)	500
Hin6I	GCGC	5 cut(s)	268, 469, 477, 479, 486
HinP1I	GCGC	5 cut(s)	268, 469, 477, 479, 486
HindIII	AAGCTT	1 cut(s)	444
HinfI	GANTC	5 cut(s)	128, 281, 410, 561, 622
HpaII	CCGG	4 cut(s)	361, 472, 643, 736
HphI	GGTGA	3 cut(s)	205, 280, 725
Hpy166II	GTNNAC	3 cut(s)	13, 230, 277
Hpy188I	TCNGA	4 cut(s)	357, 442, 493, 560
Hpy188III	TCNNGA	2 cut(s)	80, 653
Hpy8I	GTNNAC	3 cut(s)	13, 230, 277
Hpy99I	CGWCG	4 cut(s)	98, 346, 457, 666
HpyAV	CCTTC	3 cut(s)	86, 337, 640
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	6 cut(s)	9, 171, 243, 309, 341, 611
HpyCH4V	TGCA	1 cut(s)	543
HpyF3I	CTNAG	3 cut(s)	37, 624, 681
HpySE526I	ACGT	6 cut(s)	9, 171, 243, 309, 341, 611
Hsp92I	GRCGYC	1 cut(s)	500
HspAI	GCGC	5 cut(s)	268, 469, 477, 479, 486
KspI	CCGCGG	1 cut(s)	600
LguI	GCTCTTC	1 cut(s)	693
LmnI	GCTCC	5 cut(s)	23, 182, 323, 655, 663
Lsp1109I	GCAGC	1 cut(s)	730
LweI	GCATC	1 cut(s)	35
MaeII	ACGT	6 cut(s)	9, 171, 243, 309, 341, 611
MboII	GAAGA	6 cut(s)	99, 178, 304, 508, 710, 722
MhlI	GDGCHC	4 cut(s)	405, 530, 585, 660
MluCI	AATT	2 cut(s)	251, 722
MluI	ACGCGT	1 cut(s)	546
MlyI	GAGTC	4 cut(s)	122, 275, 404, 616
MmeI	TCCRAC	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	738
MspA1I	CMGCKG	1 cut(s)	599
MspI	CCGG	4 cut(s)	361, 472, 643, 736
MspR9I	CCNGG	2 cut(s)	362, 737
MvnI	CGCG	6 cut(s)	268, 323, 469, 479, 548, 599
NciI	CCSGG	2 cut(s)	362, 737
NlaIV	GGNNCC	5 cut(s)	319, 519, 528, 529, 582
PauI	GCGCGC	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	561
PkrI	GCNGC	5 cut(s)	153, 468, 504, 601, 720
PleI	GAGTC	4 cut(s)	122, 275, 404, 616
PpsI	GAGTC	4 cut(s)	122, 275, 404, 616
Psp124BI	GAGCTC	1 cut(s)	660
Psp1406I	AACGTT	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	5 cut(s)	319, 519, 528, 529, 582
PspOMI	GGGCCC	1 cut(s)	526
PspPI	GGNCC	4 cut(s)	392, 518, 526, 527
PteI	GCGCGC	1 cut(s)	477
RsaI	GTAC	3 cut(s)	14, 231, 590
RsaNI	GTAC	3 cut(s)	13, 230, 589
RseI	CAYNNNNRTG	1 cut(s)	738
SacI	GAGCTC	1 cut(s)	660
SacII	CCGCGG	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	693
SatI	GCNGC	5 cut(s)	152, 467, 503, 600, 719
Sau96I	GGNCC	4 cut(s)	392, 518, 526, 527
SchI	GAGTC	4 cut(s)	122, 275, 404, 616
ScrFI	CCNGG	2 cut(s)	362, 737
SduI	GDGCHC	4 cut(s)	405, 530, 585, 660
SfaNI	GCATC	1 cut(s)	35
Sfr303I	CCGCGG	1 cut(s)	600
SgrAI	CRCCGGYG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	738
Sse9I	AATT	2 cut(s)	251, 722
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	360, 735
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	6 cut(s)	12, 174, 246, 312, 344, 614
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	251, 722
TauI	GCSGC	4 cut(s)	154, 469, 505, 602
TfiI	GAWTC	1 cut(s)	561
TscAI	CASTG	3 cut(s)	241, 488, 512
TseI	GCWGC	1 cut(s)	718
TspGWI	ACGGA	3 cut(s)	30, 441, 650
TspRI	CASTG	3 cut(s)	241, 488, 512
VpaK11BI	GGWCC	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.