Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Reverse (-)

27721610 .. 27722690

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00306760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGGACATGTACGGTCTCCCCTCCTCCTCATCATCAGCCCAACCCCATGACTACTTCCCCATCGACGACCTCCTCGATTTATCCAACGACGAAATCTTCTCCAACTCCTCCTCCACTACTTCCTCCACCGACTCCCACCCCAACCACCACCATCACCACCACTACACTCCACCTCCTCCTCCCCCAGCTCTCTTCTATCCCCCTCCACCACCGACTTCACCAACGCCCTCTGCCTCCCGCGAGGATGTGGCGGAGCTGGAGTGGCTGTCGCGCTTCGTGGACGACTCCTTCACCGACTTCCCGGCGCCGCCGGACCTCTCCGGATCCATGTCCCTCCCCAACGACAAGTCGTTCTCCAACCGCGGCCACGCCAAGCCCATTCGCCAAGCGGAAGGCTCCGTGTCCATCCGGAGGTGCACCCACTGCGCCTCGGAGAAGACGCCGCAGTGGCGGACGGGCCCATTGGGCCCGAAAACACTCTGCAATGCCTGCGGTGTGCGTTACAAGTCGGGTCGGCTCGTACCCGAGTACCGGCCCGCGGCGAGCCCGACGTTCGTGCTAACTCAGCATTCGAACTCGCACCGGAAGGTGATGGAGCTCCGTCGGCAGAAGGAGGTGTCGTCGCAGCAGGAATCGGAGGAGGAGGAGGAGGAGGGGCAGCAGAGGCGATTCTATCTTCACCCGAACGGGTTTCGAGTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

235

Amino Acids

26.38

Weight (kDa)

5.99

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	140 - 174	9e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccII	CGCG	4 cut(s)	243, 274, 366, 542
AccIII	TCCGGA	2 cut(s)	323, 411
AclWI	GGATC	2 cut(s)	321, 334
AcoI	YGGCCR	1 cut(s)	367
AcyI	GRCGYC	2 cut(s)	308, 443
AfaI	GTAC	3 cut(s)	14, 525, 533
AfiI	CCNNNNNNNGG	3 cut(s)	414, 534, 541
AflIII	ACRYGT	1 cut(s)	9
AluBI	AGCT	3 cut(s)	191, 259, 601
AluI	AGCT	3 cut(s)	191, 259, 601
Alw21I	GWGCWC	2 cut(s)	422, 603
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	321, 334
Ama87I	CYCGRG	1 cut(s)	527
Aor13HI	TCCGGA	2 cut(s)	323, 411
AoxI	GGCC	4 cut(s)	367, 460, 469, 536
ApaI	GGGCCC	2 cut(s)	464, 473
ApaLI	GTGCAC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	628, 661
AspLEI	GCGC	3 cut(s)	276, 310, 431
AspS9I	GGNCC	6 cut(s)	316, 460, 461, 469, 470, 537
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	5 cut(s)	149, 213, 286, 604, 674
AsuII	TTCGAA	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	316
BaeGI	GKGCMC	3 cut(s)	422, 464, 473
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BamHI	GGATCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	4 cut(s)	464, 473, 551, 603
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	2 cut(s)	422, 603
BbvI	GCAGC	2 cut(s)	640, 673
BccI	CCATC	4 cut(s)	71, 162, 416, 589
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	311
BglI	GCCNNNNNGGC	2 cut(s)	451, 468
BisI	GCNGC	6 cut(s)	311, 367, 446, 543, 629, 662
BlsI	GCNGC	6 cut(s)	312, 368, 447, 544, 630, 663
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	6 cut(s)	316, 460, 461, 469, 470, 537
BmiI	GGNNCC	5 cut(s)	309, 328, 400, 462, 471
BmrFI	CCNGG	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	305
BsaHI	GRCGYC	2 cut(s)	308, 443
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	364, 432, 540
BsaWI	WCCGGW	3 cut(s)	323, 411, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 534, 541
Bse118I	RCCGGY	1 cut(s)	534
Bse3DI	GCAATG	1 cut(s)	493
BseAI	TCCGGA	2 cut(s)	323, 411
BseDI	CCNNGG	3 cut(s)	364, 432, 540
BseGI	GGATG	2 cut(s)	253, 408
BseLI	CCNNNNNNNGG	3 cut(s)	414, 534, 541
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	581
BseSI	GKGCMC	3 cut(s)	422, 464, 473
BseXI	GCAGC	2 cut(s)	640, 673
BseYI	CCCAGC	1 cut(s)	187
Bsh1236I	CGCG	4 cut(s)	243, 274, 366, 542
BshFI	GGCC	4 cut(s)	369, 462, 471, 538
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	422, 603
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	6 cut(s)	305, 314, 324, 412, 535, 586
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	414, 534, 541
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	4 cut(s)	369, 462, 471, 538
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	527
Bsp119I	TTCGAA	1 cut(s)	575
Bsp120I	GGGCCC	2 cut(s)	460, 469
Bsp1286I	GDGCHC	5 cut(s)	422, 464, 473, 551, 603
Bsp13I	TCCGGA	2 cut(s)	323, 411
Bsp143I	GATC	1 cut(s)	326
BspANI	GGCC	4 cut(s)	369, 462, 471, 538
BspCNI	CTCAG	1 cut(s)	580
BspEI	TCCGGA	2 cut(s)	323, 411
BspFNI	CGCG	4 cut(s)	243, 274, 366, 542
BspLI	GGNNCC	5 cut(s)	309, 328, 400, 462, 471
BspPI	GGATC	2 cut(s)	321, 334
BspT104I	TTCGAA	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	364, 432, 540
BssMI	GATC	1 cut(s)	326
BssNI	GRCGYC	2 cut(s)	308, 443
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	2 cut(s)	308, 443
BstAPI	GCANNNNNTGC	2 cut(s)	426, 492
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	3 cut(s)	493, 540, 547
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	2 cut(s)	364, 540
BstF5I	GGATG	2 cut(s)	253, 408
BstFNI	CGCG	4 cut(s)	243, 274, 366, 542
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	3 cut(s)	276, 310, 431
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	8 cut(s)	265, 426, 451, 468, 492, 568, 607, 667
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	303
BstSLI	GKGCMC	3 cut(s)	422, 464, 473
BstUI	CGCG	4 cut(s)	243, 274, 366, 542
BstV1I	GCAGC	2 cut(s)	640, 673
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	4 cut(s)	369, 462, 471, 538
BtgI	CCRYGG	2 cut(s)	364, 540
BtsCI	GGATG	2 cut(s)	253, 408
BtsI	GCAGTG	2 cut(s)	424, 455
BtsIMutI	CAGTG	2 cut(s)	424, 455
Cac8I	GCNNGC	3 cut(s)	493, 540, 547
CfoI	GCGC	3 cut(s)	276, 310, 431
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	6 cut(s)	316, 460, 461, 469, 470, 537
Cfr42I	CCGCGG	2 cut(s)	367, 543
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	13, 524, 532
CviAII	CATG	3 cut(s)	10, 50, 331
CviQI	GTAC	3 cut(s)	13, 524, 532
DdeI	CTNAG	1 cut(s)	567
DinI	GGCGCC	1 cut(s)	309
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	2 cut(s)	269, 469
Ecl136II	GAGCTC	1 cut(s)	601
Eco24I	GRGCYC	4 cut(s)	464, 473, 551, 603
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	601
Eco88I	CYCGRG	1 cut(s)	527
EcoICRI	GAGCTC	1 cut(s)	601
EcoT38I	GRGCYC	4 cut(s)	464, 473, 551, 603
EgeI	GGCGCC	1 cut(s)	309
EheI	GGCGCC	1 cut(s)	309
FaeI	CATG	3 cut(s)	13, 53, 334
FaiI	YATR	3 cut(s)	11, 51, 332
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	3 cut(s)	9, 49, 330
FauI	CCCGC	2 cut(s)	248, 547
Fnu4HI	GCNGC	6 cut(s)	311, 367, 446, 543, 629, 662
FokI	GGATG	2 cut(s)	260, 395
FriOI	GRGCYC	4 cut(s)	464, 473, 551, 603
Fsp4HI	GCNGC	6 cut(s)	311, 367, 446, 543, 629, 662
GlaI	GCGC	3 cut(s)	275, 309, 430
GluI	GCNGC	6 cut(s)	311, 367, 446, 543, 629, 662
GsaI	CCCAGC	1 cut(s)	191
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	4 cut(s)	369, 462, 471, 538
HapII	CCGG	6 cut(s)	305, 314, 324, 412, 535, 586
HgaI	GACGC	1 cut(s)	451
HhaI	GCGC	3 cut(s)	276, 310, 431
Hin1I	GRCGYC	2 cut(s)	308, 443
Hin1II	CATG	3 cut(s)	13, 53, 334
Hin6I	GCGC	3 cut(s)	274, 308, 429
HinP1I	GCGC	3 cut(s)	274, 308, 429
HinfI	GANTC	4 cut(s)	134, 287, 635, 672
HpaII	CCGG	6 cut(s)	305, 314, 324, 412, 535, 586
HphI	GGTGA	5 cut(s)	149, 213, 286, 604, 674
Hpy166II	GTNNAC	2 cut(s)	283, 420
Hpy188I	TCNGA	2 cut(s)	436, 640
Hpy188III	TCNNGA	2 cut(s)	324, 412
Hpy8I	GTNNAC	2 cut(s)	283, 420
Hpy99I	CGWCG	5 cut(s)	71, 95, 556, 609, 628
HpyAV	CCTTC	4 cut(s)	301, 389, 583, 607
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	2 cut(s)	420, 486
HpyF10VI	GCNNNNNNNGC	8 cut(s)	265, 426, 451, 468, 492, 568, 607, 667
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	2 cut(s)	308, 443
Hsp92II	CATG	3 cut(s)	13, 53, 334
HspAI	GCGC	3 cut(s)	274, 308, 429
KasI	GGCGCC	1 cut(s)	307
Kpn2I	TCCGGA	2 cut(s)	323, 411
KspI	CCGCGG	2 cut(s)	367, 543
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	4 cut(s)	256, 404, 598, 606
Lsp1109I	GCAGC	2 cut(s)	640, 673
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	4 cut(s)	91, 187, 451, 671
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	5 cut(s)	422, 464, 473, 551, 603
Mly113I	GGCGCC	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	128, 281
MmeI	TCCRAC	3 cut(s)	111, 129, 384
MroI	TCCGGA	2 cut(s)	323, 411
MspA1I	CMGCKG	2 cut(s)	366, 542
MspI	CCGG	6 cut(s)	305, 314, 324, 412, 535, 586
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	571
MvnI	CGCG	4 cut(s)	243, 274, 366, 542
MwoI	GCNNNNNNNGC	8 cut(s)	265, 426, 451, 468, 492, 568, 607, 667
NarI	GGCGCC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	3 cut(s)	13, 53, 334
NlaIV	GGNNCC	5 cut(s)	309, 328, 400, 462, 471
NspI	RCATGY	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	575
PciI	ACATGT	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	2 cut(s)	635, 672
PkrI	GCNGC	6 cut(s)	312, 368, 447, 544, 630, 663
PleI	GAGTC	2 cut(s)	128, 281
PluTI	GGCGCC	1 cut(s)	311
PpsI	GAGTC	2 cut(s)	128, 281
PscI	ACATGT	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	5 cut(s)	309, 328, 400, 462, 471
PspOMI	GGGCCC	2 cut(s)	460, 469
PspPI	GGNCC	6 cut(s)	316, 460, 461, 469, 470, 537
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	3 cut(s)	14, 525, 533
RsaNI	GTAC	3 cut(s)	13, 524, 532
SacI	GAGCTC	1 cut(s)	603
SacII	CCGCGG	2 cut(s)	367, 543
SatI	GCNGC	6 cut(s)	311, 367, 446, 543, 629, 662
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	6 cut(s)	316, 460, 461, 469, 470, 537
SchI	GAGTC	2 cut(s)	128, 281
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	5 cut(s)	422, 464, 473, 551, 603
SfiI	GGCCNNNNNGGCC	1 cut(s)	468
SfoI	GGCGCC	1 cut(s)	309
Sfr303I	CCGCGG	2 cut(s)	367, 543
SfuI	TTCGAA	1 cut(s)	575
SgrBI	CCGCGG	2 cut(s)	367, 543
SinI	GGWCC	1 cut(s)	316
SspDI	GGCGCC	1 cut(s)	307
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	4 cut(s)	66, 78, 575, 697
TauI	GCSGC	4 cut(s)	313, 369, 448, 545
TfiI	GAWTC	2 cut(s)	635, 672
TscAI	CASTG	2 cut(s)	431, 455
TseI	GCWGC	2 cut(s)	628, 661
TspGWI	ACGGA	2 cut(s)	391, 593
TspRI	CASTG	2 cut(s)	431, 455
VneI	GTGCAC	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	316
XceI	RCATGY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.