Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Forward (+)

22373013 .. 22374554

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGACGTCTACGGCATGTCTTCACCGGACTTGCTTCGTATCGACGACCTTCTCGATTTCTCCAACGACGAAATCTTCTCTTCCTCTTCCACCGTCACTTCCTCCGCCGCTTCCTCCGCCGCTTCTTCCGAAAACCCTTTCAGCTTTCCTTCTTCCACCTACACTTCTCCTACTCTCCTCACCGACTTCACTCACGATCTCTGCGTTCCCAGTGACGACGCAGCTCATCTCGAATGGTTATCGCGATTCGTTGACGATTCATTCTCCGATTTCCCAGCAAATCCTTTAACCATGACCGTTAGACCCGAGATTTCATTCACCGGAAAACCTAGAAGTCGCCGATCAAGAGCACCAGCACCTTCCGTAGCTGGAACTTGGGCTCCGATGTCTGAATCAGAGCTTTGTCACTCCGTCGCTAAACCTAAACCGAAGAAAGTCTACAACGCTGAATCGGTTACGGCGGATGGAGCGAGGCGGTGCACGCACTGTGCCTCGGAGAAAACGCCACAGTGGAGAACTGGACCGCTTGGACCTAAAACACTTTGTAACGCTTGTGGAGTTCGTTACAAATCAGGGAGGCTTGTACCGGAATACAGACCGGCGTCGAGTCCGACGTTTGTATTGACTCAGCATTCGAACTCTCATCGGAAAGTTATGGAGCTCCGGCGACAGAAGGAACAACAAGAATCTTGCGTTCGAATTCCGCCGTTTCAGCCGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

240

Amino Acids

26.47

Weight (kDa)

7.62

Isoelectric Point (pI)

64.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	160 - 194	9.3e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccI	GTMKAC	2 cut(s)	9, 438
AccII	CGCG	1 cut(s)	244
AciI	CCGC	9 cut(s)	105, 108, 117, 120, 461, 475, 524, 704, 716
AcsI	RAATTY	1 cut(s)	699
AcyI	GRCGYC	2 cut(s)	6, 602
AfaI	GTAC	1 cut(s)	585
AloI	GAACNNNNNNTCC	2 cut(s)	364, 396
AluBI	AGCT	5 cut(s)	144, 224, 368, 400, 661
AluI	AGCT	5 cut(s)	144, 224, 368, 400, 661
Alw21I	GWGCWC	3 cut(s)	352, 482, 663
Alw44I	GTGCAC	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	305
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	699
ArsI	GACNNNNNNTTYG	2 cut(s)	616, 648
AspS9I	GGNCC	2 cut(s)	521, 530
AsuHPI	GGTGA	3 cut(s)	15, 172, 310
AsuII	TTCGAA	2 cut(s)	635, 697
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	521, 530
BaeGI	GKGCMC	1 cut(s)	482
BanII	GRGCYC	2 cut(s)	382, 663
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	3 cut(s)	352, 482, 663
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	3 cut(s)	28, 474, 691
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	4 cut(s)	108, 120, 222, 716
BlsI	GCNGC	4 cut(s)	109, 121, 223, 717
Bme18I	GGWCC	2 cut(s)	521, 530
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	521, 530
BmiI	GGNNCC	1 cut(s)	381
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	601
BpiI	GAAGAC	1 cut(s)	12
Bpu14I	TTCGAA	2 cut(s)	635, 697
BsaHI	GRCGYC	2 cut(s)	6, 602
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	3 cut(s)	25, 320, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	2 cut(s)	210, 523
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	2 cut(s)	210, 523
BseRI	GAGGAG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	244
BsiHKAI	GWGCWC	3 cut(s)	352, 482, 663
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	5 cut(s)	26, 321, 587, 599, 664
BsmI	GAATGC	1 cut(s)	631
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	2 cut(s)	635, 697
Bsp1286I	GDGCHC	4 cut(s)	352, 382, 482, 663
Bsp143I	GATC	2 cut(s)	196, 341
Bsp68I	TCGCGA	1 cut(s)	244
BspACI	CCGC	9 cut(s)	105, 108, 117, 120, 461, 475, 524, 704, 716
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	381
BspT104I	TTCGAA	2 cut(s)	635, 697
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	210, 523
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	196, 341
BssNI	GRCGYC	2 cut(s)	6, 602
Bst4CI	ACNGT	4 cut(s)	94, 298, 488, 510
Bst6I	CTCTTC	2 cut(s)	85, 91
BstACI	GRCGYC	2 cut(s)	6, 602
BstBI	TTCGAA	2 cut(s)	635, 697
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	244
BstKTI	GATC	2 cut(s)	199, 344
BstMBI	GATC	2 cut(s)	196, 341
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 467, 481, 712
BstNSI	RCATGY	1 cut(s)	19
BstPAI	GACNNNNGTC	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	3 cut(s)	217, 484, 515
BtuMI	TCGCGA	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	482
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	521, 530
CseI	GACGC	2 cut(s)	227, 591
Csp6I	GTAC	1 cut(s)	584
CviAII	CATG	2 cut(s)	16, 292
CviJI	RGCY	8 cut(s)	144, 224, 368, 380, 400, 580, 661, 715
CviKI_1	RGCY	8 cut(s)	144, 224, 368, 380, 400, 580, 661, 715
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	2 cut(s)	198, 343
DpnII	GATC	2 cut(s)	196, 341
Eam1104I	CTCTTC	2 cut(s)	85, 91
EarI	CTCTTC	2 cut(s)	85, 91
EciI	GGCGGA	4 cut(s)	94, 106, 476, 693
Ecl136II	GAGCTC	1 cut(s)	661
Eco24I	GRGCYC	2 cut(s)	382, 663
Eco47I	GGWCC	2 cut(s)	521, 530
Eco53kI	GAGCTC	1 cut(s)	661
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	661
EcoRI	GAATTC	1 cut(s)	699
EcoT38I	GRGCYC	2 cut(s)	382, 663
FaeI	CATG	2 cut(s)	19, 295
FaiI	YATR	3 cut(s)	17, 293, 656
FatI	CATG	2 cut(s)	15, 291
FblI	GTMKAC	2 cut(s)	9, 438
Fnu4HI	GCNGC	4 cut(s)	108, 120, 222, 716
FokI	GGATG	1 cut(s)	476
FriOI	GRGCYC	2 cut(s)	382, 663
Fsp4HI	GCNGC	4 cut(s)	108, 120, 222, 716
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	4 cut(s)	108, 120, 222, 716
GsaI	CCCAGC	1 cut(s)	278
HapII	CCGG	5 cut(s)	26, 321, 587, 599, 664
HgaI	GACGC	2 cut(s)	227, 591
Hin1I	GRCGYC	2 cut(s)	6, 602
Hin1II	CATG	2 cut(s)	19, 295
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	7 cut(s)	246, 257, 392, 449, 607, 625, 686
HpaII	CCGG	5 cut(s)	26, 321, 587, 599, 664
HphI	GGTGA	3 cut(s)	15, 172, 310
Hpy166II	GTNNAC	4 cut(s)	10, 253, 439, 480
Hpy188I	TCNGA	8 cut(s)	130, 268, 384, 391, 397, 496, 612, 648
Hpy188III	TCNNGA	5 cut(s)	53, 194, 230, 243, 345
Hpy8I	GTNNAC	4 cut(s)	10, 253, 439, 480
Hpy99I	CGWCG	6 cut(s)	47, 71, 221, 416, 607, 616
HpyAV	CCTTC	4 cut(s)	59, 159, 369, 667
HpyCH4III	ACNGT	4 cut(s)	94, 298, 488, 510
HpyCH4IV	ACGT	2 cut(s)	6, 614
HpyCH4V	TGCA	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 467, 481, 712
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	2 cut(s)	6, 614
Hsp92I	GRCGYC	2 cut(s)	6, 602
Hsp92II	CATG	2 cut(s)	19, 295
Kzo9I	GATC	2 cut(s)	196, 341
LmnI	GCTCC	4 cut(s)	385, 467, 658, 666
Lsp1109I	GCAGC	1 cut(s)	233
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	6, 614
MaeIII	GTNAC	6 cut(s)	94, 212, 404, 454, 545, 563
MalI	GATC	2 cut(s)	198, 343
MboI	GATC	2 cut(s)	196, 341
MboII	GAAGA	7 cut(s)	12, 67, 72, 78, 117, 144, 442
MhlI	GDGCHC	4 cut(s)	352, 382, 482, 663
MluCI	AATT	1 cut(s)	699
MlyI	GAGTC	2 cut(s)	616, 619
MmeI	TCCRAC	2 cut(s)	87, 635
MnlI	CCTC	7 cut(s)	94, 112, 124, 188, 465, 502, 570
MseI	TTAA	1 cut(s)	287
MspI	CCGG	5 cut(s)	26, 321, 587, 599, 664
Mva1269I	GAATGC	1 cut(s)	631
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	4 cut(s)	116, 467, 481, 712
NdeII	GATC	2 cut(s)	196, 341
NlaIII	CATG	2 cut(s)	19, 295
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	3 cut(s)	94, 212, 404
NruI	TCGCGA	1 cut(s)	244
NspI	RCATGY	1 cut(s)	19
NspV	TTCGAA	2 cut(s)	635, 697
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 201, 611
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	5 cut(s)	246, 257, 392, 449, 686
PkrI	GCNGC	4 cut(s)	109, 121, 223, 717
PleI	GAGTC	2 cut(s)	615, 619
PpsI	GAGTC	2 cut(s)	615, 619
PshAI	GACNNNNGTC	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	521, 530
RruI	TCGCGA	1 cut(s)	244
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	108, 120, 222, 716
Sau3AI	GATC	2 cut(s)	196, 341
Sau96I	GGNCC	2 cut(s)	521, 530
SchI	GAGTC	2 cut(s)	616, 619
SduI	GDGCHC	4 cut(s)	352, 382, 482, 663
SfuI	TTCGAA	2 cut(s)	635, 697
SinI	GGWCC	2 cut(s)	521, 530
Sse9I	AATT	1 cut(s)	699
SsiI	CCGC	9 cut(s)	105, 108, 117, 120, 461, 475, 524, 704, 716
SspMI	CTAG	1 cut(s)	330
SstI	GAGCTC	1 cut(s)	663
TaaI	ACNGT	4 cut(s)	94, 298, 488, 510
TaiI	ACGT	2 cut(s)	9, 617
TaqI	TCGA	6 cut(s)	42, 54, 231, 605, 635, 697
TasI	AATT	1 cut(s)	699
TauI	GCSGC	3 cut(s)	110, 122, 718
TfiI	GAWTC	5 cut(s)	246, 257, 392, 449, 686
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	3 cut(s)	217, 491, 515
TseFI	GTSAC	3 cut(s)	94, 212, 404
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	3 cut(s)	94, 212, 404
TspDTI	ATGAA	2 cut(s)	249, 303
TspGWI	ACGGA	2 cut(s)	352, 400
TspRI	CASTG	3 cut(s)	217, 491, 515
VneI	GTGCAC	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	521, 530
XapI	RAATTY	1 cut(s)	699
XceI	RCATGY	1 cut(s)	19
XmiI	GTMKAC	2 cut(s)	9, 438
XspI	CTAG	1 cut(s)	330
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.