Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Forward (+)

43315838 .. 43317345

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG198700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGGACATGTACGGTCTCTCCTCCTCATCATCATCAGCCCAACCCCATGACTACTTCCCCATCGACGACCTCCTCGATTTATCCAACGACGAAATCTTCTCCAACTCCTCCTCCACTACTTCCTCCACCGACTCCCACCACCACCACTACTACACTCCACCTCCACCTCCCCCAGCTCTCTTCCACCCCCCCTCCACCACCGACTTCACCAATGCCCTCTGCCTCCCGAGCGAGGATGTGGCGGAGCTGGAGTGGCTGTCGCGCTTCGTGGACGACTCCTTCACCGACTTCCCGGCGCCGCCGGAGCTCTCCGGATCCATGTCCCTCCCCAACGACAAGTCGTTCTCCAACCGCGGCCACGCCAAGCCCATTCGCCAAGCGGAAGGCTCCGGGTCCATCCGGAGGTGCACCCACTGCGCCTCGGAGAAGACGCCGCAGTGGAGGACGGGCCCATCGGGCCCGAAGACGCTGTGCAATGCCTGCGGTGTTCGGTACAAGTCGGGTCGGCTCGTGCCCGAGTACCGGCCCGCGGCCAGCCCGACGTTCGTGCTGACTCAGCATTCGAACTCGCACCGGAAGGTGATGGAGCTCCGGCGGCAGAAGGAGGTGTCGTCGCAGCAGGAATCCGAGGAGGAGGAGCAGCAGAGGCGATTCTATCTTCACCCGAATGGGTTTCGAGTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

229

Amino Acids

25.69

Weight (kDa)

5.86

Isoelectric Point (pI)

70.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	137 - 171	1.6e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AccII	CGCG	3 cut(s)	265, 357, 533
AccIII	TCCGGA	2 cut(s)	314, 402
AclWI	GGATC	2 cut(s)	312, 325
AcoI	YGGCCR	2 cut(s)	358, 534
AcyI	GRCGYC	2 cut(s)	299, 434
AfaI	GTAC	3 cut(s)	14, 497, 524
AfiI	CCNNNNNNNGG	4 cut(s)	235, 405, 525, 532
AflIII	ACRYGT	1 cut(s)	9
AluBI	AGCT	4 cut(s)	179, 250, 310, 592
AluI	AGCT	4 cut(s)	179, 250, 310, 592
Alw21I	GWGCWC	3 cut(s)	312, 413, 594
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	312, 325
Ama87I	CYCGRG	2 cut(s)	229, 518
Aor13HI	TCCGGA	2 cut(s)	314, 402
AoxI	GGCC	5 cut(s)	358, 451, 460, 527, 534
ApaI	GGGCCC	2 cut(s)	455, 464
ApaLI	GTGCAC	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	619, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AspLEI	GCGC	3 cut(s)	267, 301, 422
AspS9I	GGNCC	6 cut(s)	396, 451, 452, 460, 461, 528
AsuC2I	CCSGG	2 cut(s)	296, 394
AsuHPI	GGTGA	4 cut(s)	202, 277, 595, 656
AsuII	TTCGAA	1 cut(s)	566
AvaI	CYCGRG	2 cut(s)	229, 518
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	4 cut(s)	413, 455, 464, 519
BamHI	GGATCC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	4 cut(s)	312, 455, 464, 594
BauI	CACGAG	1 cut(s)	512
BbsI	GAAGAC	2 cut(s)	437, 473
Bbv12I	GWGCWC	3 cut(s)	312, 413, 594
BbvI	GCAGC	2 cut(s)	631, 655
BccI	CCATC	4 cut(s)	71, 407, 463, 580
BcgI	CGANNNNNNTGC	2 cut(s)	532, 566
BcnI	CCSGG	2 cut(s)	296, 394
BcoDI	GTCTC	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	459
BisI	GCNGC	7 cut(s)	302, 358, 437, 534, 599, 620, 644
BlsI	GCNGC	7 cut(s)	303, 359, 438, 535, 600, 621, 645
Bme1390I	CCNGG	2 cut(s)	296, 394
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	2 cut(s)	229, 518
BmgT120I	GGNCC	6 cut(s)	396, 451, 452, 460, 461, 528
BmiI	GGNNCC	6 cut(s)	300, 319, 391, 397, 453, 462
BmrFI	CCNGG	2 cut(s)	296, 394
BpiI	GAAGAC	2 cut(s)	437, 473
BpmI	CTGGAG	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	566
BpuMI	CCSGG	2 cut(s)	296, 394
BsaHI	GRCGYC	2 cut(s)	299, 434
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	355, 423, 531, 630
BsaWI	WCCGGW	3 cut(s)	314, 402, 576
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 405, 525, 532
Bse118I	RCCGGY	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	484
BseAI	TCCGGA	2 cut(s)	314, 402
BseDI	CCNNGG	4 cut(s)	355, 423, 531, 630
BseGI	GGATG	2 cut(s)	244, 399
BseLI	CCNNNNNNNGG	4 cut(s)	235, 405, 525, 532
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	572
BseRI	GAGGAG	8 cut(s)	13, 16, 65, 100, 103, 647, 650, 653
BseSI	GKGCMC	4 cut(s)	413, 455, 464, 519
BseXI	GCAGC	2 cut(s)	631, 655
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	3 cut(s)	265, 357, 533
BshFI	GGCC	5 cut(s)	360, 453, 462, 529, 536
BshNI	GGYRCC	1 cut(s)	298
BsiHKAI	GWGCWC	3 cut(s)	312, 413, 594
BsiHKCI	CYCGRG	2 cut(s)	229, 518
BsiSI	CCGG	8 cut(s)	296, 305, 315, 393, 403, 526, 577, 595
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	4 cut(s)	235, 405, 525, 532
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	310
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	5 cut(s)	360, 453, 462, 529, 536
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	2 cut(s)	229, 518
Bsp119I	TTCGAA	1 cut(s)	566
Bsp120I	GGGCCC	2 cut(s)	451, 460
Bsp1286I	GDGCHC	6 cut(s)	312, 413, 455, 464, 519, 594
Bsp13I	TCCGGA	2 cut(s)	314, 402
Bsp143I	GATC	1 cut(s)	317
BspANI	GGCC	5 cut(s)	360, 453, 462, 529, 536
BspCNI	CTCAG	1 cut(s)	571
BspEI	TCCGGA	2 cut(s)	314, 402
BspFNI	CGCG	3 cut(s)	265, 357, 533
BspLI	GGNNCC	6 cut(s)	300, 319, 391, 397, 453, 462
BspPI	GGATC	2 cut(s)	312, 325
BspT104I	TTCGAA	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	525
BssAI	RCCGGY	1 cut(s)	525
BssECI	CCNNGG	4 cut(s)	355, 423, 531, 630
BssMI	GATC	1 cut(s)	317
BssNI	GRCGYC	2 cut(s)	299, 434
BssSI	CACGAG	1 cut(s)	512
Bst2BI	CACGAG	1 cut(s)	512
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	2 cut(s)	299, 434
BstAPI	GCANNNNNTGC	2 cut(s)	417, 483
BstBI	TTCGAA	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	484, 531, 538
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	2 cut(s)	355, 531
BstF5I	GGATG	2 cut(s)	244, 399
BstFNI	CGCG	3 cut(s)	265, 357, 533
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	3 cut(s)	267, 301, 422
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	9 cut(s)	231, 256, 307, 417, 459, 483, 559, 598, 649
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	294, 392
BstSLI	GKGCMC	4 cut(s)	413, 455, 464, 519
BstUI	CGCG	3 cut(s)	265, 357, 533
BstV1I	GCAGC	2 cut(s)	631, 655
BstV2I	GAAGAC	2 cut(s)	437, 473
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	5 cut(s)	360, 453, 462, 529, 536
BtgI	CCRYGG	2 cut(s)	355, 531
BtsCI	GGATG	2 cut(s)	244, 399
BtsI	GCAGTG	2 cut(s)	415, 446
BtsIMutI	CAGTG	2 cut(s)	415, 446
Cac8I	GCNNGC	3 cut(s)	484, 531, 538
CfoI	GCGC	3 cut(s)	267, 301, 422
Cfr10I	RCCGGY	1 cut(s)	525
Cfr13I	GGNCC	6 cut(s)	396, 451, 452, 460, 461, 528
Cfr42I	CCGCGG	2 cut(s)	358, 534
CseI	GACGC	2 cut(s)	442, 478
Csp6I	GTAC	3 cut(s)	13, 496, 523
CviAII	CATG	3 cut(s)	10, 50, 322
CviQI	GTAC	3 cut(s)	13, 496, 523
DdeI	CTNAG	1 cut(s)	558
DinI	GGCGCC	1 cut(s)	300
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
EaeI	YGGCCR	2 cut(s)	358, 534
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	2 cut(s)	310, 592
Eco24I	GRGCYC	4 cut(s)	312, 455, 464, 594
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	396
Eco53kI	GAGCTC	2 cut(s)	310, 592
Eco88I	CYCGRG	2 cut(s)	229, 518
EcoICRI	GAGCTC	2 cut(s)	310, 592
EcoT38I	GRGCYC	4 cut(s)	312, 455, 464, 594
EgeI	GGCGCC	1 cut(s)	300
EheI	GGCGCC	1 cut(s)	300
FaeI	CATG	3 cut(s)	13, 53, 325
FaiI	YATR	3 cut(s)	11, 51, 323
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	3 cut(s)	9, 49, 321
FauI	CCCGC	1 cut(s)	538
Fnu4HI	GCNGC	7 cut(s)	302, 358, 437, 534, 599, 620, 644
FokI	GGATG	2 cut(s)	251, 386
FriOI	GRGCYC	4 cut(s)	312, 455, 464, 594
Fsp4HI	GCNGC	7 cut(s)	302, 358, 437, 534, 599, 620, 644
GlaI	GCGC	3 cut(s)	266, 300, 421
GluI	GCNGC	7 cut(s)	302, 358, 437, 534, 599, 620, 644
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	272
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	5 cut(s)	360, 453, 462, 529, 536
HapII	CCGG	8 cut(s)	296, 305, 315, 393, 403, 526, 577, 595
HgaI	GACGC	2 cut(s)	442, 478
HhaI	GCGC	3 cut(s)	267, 301, 422
Hin1I	GRCGYC	2 cut(s)	299, 434
Hin1II	CATG	3 cut(s)	13, 53, 325
Hin6I	GCGC	3 cut(s)	265, 299, 420
HinP1I	GCGC	3 cut(s)	265, 299, 420
HinfI	GANTC	5 cut(s)	134, 278, 556, 626, 654
HpaII	CCGG	8 cut(s)	296, 305, 315, 393, 403, 526, 577, 595
HphI	GGTGA	4 cut(s)	202, 277, 595, 656
Hpy166II	GTNNAC	2 cut(s)	274, 411
Hpy188I	TCNGA	2 cut(s)	427, 631
Hpy188III	TCNNGA	3 cut(s)	229, 315, 403
Hpy8I	GTNNAC	2 cut(s)	274, 411
Hpy99I	CGWCG	4 cut(s)	71, 95, 547, 619
HpyAV	CCTTC	4 cut(s)	292, 380, 574, 598
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	2 cut(s)	411, 477
HpyF10VI	GCNNNNNNNGC	9 cut(s)	231, 256, 307, 417, 459, 483, 559, 598, 649
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	545
Hsp92I	GRCGYC	2 cut(s)	299, 434
Hsp92II	CATG	3 cut(s)	13, 53, 325
HspAI	GCGC	3 cut(s)	265, 299, 420
KasI	GGCGCC	1 cut(s)	298
Kpn2I	TCCGGA	2 cut(s)	314, 402
KspI	CCGCGG	2 cut(s)	358, 534
Kzo9I	GATC	1 cut(s)	317
LmnI	GCTCC	6 cut(s)	247, 307, 395, 589, 597, 640
Lsp1109I	GCAGC	2 cut(s)	631, 655
MaeII	ACGT	1 cut(s)	545
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	5 cut(s)	91, 175, 442, 478, 653
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	6 cut(s)	312, 413, 455, 464, 519, 594
Mly113I	GGCGCC	1 cut(s)	299
MlyI	GAGTC	3 cut(s)	128, 272, 550
MmeI	TCCRAC	3 cut(s)	111, 129, 375
MroI	TCCGGA	2 cut(s)	314, 402
MslI	CAYNNNNRTG	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	357, 533
MspI	CCGG	8 cut(s)	296, 305, 315, 393, 403, 526, 577, 595
MspR9I	CCNGG	2 cut(s)	296, 394
Mva1269I	GAATGC	1 cut(s)	562
MvnI	CGCG	3 cut(s)	265, 357, 533
MwoI	GCNNNNNNNGC	9 cut(s)	231, 256, 307, 417, 459, 483, 559, 598, 649
NarI	GGCGCC	1 cut(s)	299
NciI	CCSGG	2 cut(s)	296, 394
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	3 cut(s)	13, 53, 325
NlaIV	GGNNCC	6 cut(s)	300, 319, 391, 397, 453, 462
NspI	RCATGY	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	566
PciI	ACATGT	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	626, 654
PkrI	GCNGC	7 cut(s)	303, 359, 438, 535, 600, 621, 645
PleI	GAGTC	3 cut(s)	128, 272, 550
PluTI	GGCGCC	1 cut(s)	302
PpsI	GAGTC	3 cut(s)	128, 272, 550
PscI	ACATGT	1 cut(s)	9
Psp124BI	GAGCTC	2 cut(s)	312, 594
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	6 cut(s)	300, 319, 391, 397, 453, 462
PspOMI	GGGCCC	2 cut(s)	451, 460
PspPI	GGNCC	6 cut(s)	396, 451, 452, 460, 461, 528
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	3 cut(s)	14, 497, 524
RsaNI	GTAC	3 cut(s)	13, 496, 523
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	2 cut(s)	312, 594
SacII	CCGCGG	2 cut(s)	358, 534
SatI	GCNGC	7 cut(s)	302, 358, 437, 534, 599, 620, 644
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	6 cut(s)	396, 451, 452, 460, 461, 528
SchI	GAGTC	3 cut(s)	128, 272, 550
ScrFI	CCNGG	2 cut(s)	296, 394
SduI	GDGCHC	6 cut(s)	312, 413, 455, 464, 519, 594
SfiI	GGCCNNNNNGGCC	1 cut(s)	459
SfoI	GGCGCC	1 cut(s)	300
Sfr303I	CCGCGG	2 cut(s)	358, 534
SfuI	TTCGAA	1 cut(s)	566
SgrBI	CCGCGG	2 cut(s)	358, 534
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	669
SspDI	GGCGCC	1 cut(s)	298
SstI	GAGCTC	2 cut(s)	312, 594
StyD4I	CCNGG	2 cut(s)	294, 392
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	4 cut(s)	66, 78, 566, 679
TauI	GCSGC	5 cut(s)	304, 360, 439, 536, 601
TfiI	GAWTC	2 cut(s)	626, 654
TscAI	CASTG	2 cut(s)	422, 446
TseI	GCWGC	2 cut(s)	619, 643
TspRI	CASTG	2 cut(s)	422, 446
VneI	GTGCAC	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	396
XceI	RCATGY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.