Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Reverse (-)

25374716 .. 25375518

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028630

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGGACATGTACGGTCTCCCCTCCTCATCATCATCAGCCCAACCCCATGACTACTTCCCCATCGACGACCTCCTCGATTTATCCAACGACGAAATCTTCTCCAACTCCTCCTCCACTACTTCCTCCACCGACTCCCACCCCAACCACCACCACCACCACCACCACCTCCTCCACTACACTCCACCGCCACCTCTCCCAGCTCTCTTGCACCCCTCCTCCACCACCGACTTCACCAACGCCCTCTGCCTCCCGAGCGAGGATGTGGCGGAGCTGGAGTGGCTGTCGCGCTTCGTGGACGACTCCTTCACCGACTTCCCGGCGCCGCCGGAGCTCTCCGGATCCATTTCCCTCCCCAACGACAAGTCGTTCTCCAACCGCGGCCACGCCAAGCCCATTCGCCAAGCGGAAGGCTCCGGGTCCATCCGGAGGTGCACCCACTGCGCCTCGGAGAAGACGCCGCAGTGGCGGACGGGCCCATTGGGCCCGAAGACACTCTGCAATGCCTGCGGTGTGCGTTACAAGTCGGGTCGGCTCGTACCCGAGTACCGGCCCGCGGCGAGCCCGACGTTCGTGCTGACTCAGCATTCGAACTCGCACCGGAAGGTGATGGAGCTCCGGCGGCAGAAGGAGGTGTCGTCGCAGCAGGAATCGGAGGAGGAGGAGCAGCAGAGGCGATTCTATCTTCACCCGAATGGGTTTCGAGTGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

238

Amino Acids

26.64

Weight (kDa)

6.12

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	145 - 179	9.1e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccII	CGCG	3 cut(s)	289, 381, 557
AccIII	TCCGGA	2 cut(s)	338, 426
AclWI	GGATC	2 cut(s)	336, 349
AcoI	YGGCCR	1 cut(s)	382
AcyI	GRCGYC	2 cut(s)	323, 458
AfaI	GTAC	3 cut(s)	14, 540, 548
AfiI	CCNNNNNNNGG	4 cut(s)	259, 429, 549, 556
AflIII	ACRYGT	1 cut(s)	9
AluBI	AGCT	4 cut(s)	203, 274, 334, 616
AluI	AGCT	4 cut(s)	203, 274, 334, 616
Alw21I	GWGCWC	3 cut(s)	336, 437, 618
Alw26I	GTCTC	1 cut(s)	23
Alw44I	GTGCAC	1 cut(s)	433
AlwI	GGATC	2 cut(s)	336, 349
Ama87I	CYCGRG	2 cut(s)	253, 542
Aor13HI	TCCGGA	2 cut(s)	338, 426
AoxI	GGCC	4 cut(s)	382, 475, 484, 551
ApaI	GGGCCC	2 cut(s)	479, 488
ApaLI	GTGCAC	1 cut(s)	433
ApeKI	GCWGC	2 cut(s)	643, 667
ArsI	GACNNNNNNTTYG	2 cut(s)	571, 603
AspLEI	GCGC	3 cut(s)	291, 325, 446
AspS9I	GGNCC	6 cut(s)	420, 475, 476, 484, 485, 552
AsuC2I	CCSGG	2 cut(s)	320, 418
AsuHPI	GGTGA	4 cut(s)	226, 301, 619, 680
AsuII	TTCGAA	1 cut(s)	590
AvaI	CYCGRG	2 cut(s)	253, 542
AvaII	GGWCC	1 cut(s)	420
BaeGI	GKGCMC	3 cut(s)	437, 479, 488
BaeI	ACNNNNGTAYC	2 cut(s)	530, 563
BamHI	GGATCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	5 cut(s)	336, 479, 488, 566, 618
BbsI	GAAGAC	2 cut(s)	461, 497
Bbv12I	GWGCWC	3 cut(s)	336, 437, 618
BbvI	GCAGC	2 cut(s)	655, 679
BccI	CCATC	3 cut(s)	71, 431, 604
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BcnI	CCSGG	2 cut(s)	320, 418
BcoDI	GTCTC	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	326
BglI	GCCNNNNNGGC	2 cut(s)	466, 483
BisI	GCNGC	7 cut(s)	326, 382, 461, 558, 623, 644, 668
BlsI	GCNGC	7 cut(s)	327, 383, 462, 559, 624, 645, 669
Bme1390I	CCNGG	2 cut(s)	320, 418
Bme18I	GGWCC	1 cut(s)	420
BmeT110I	CYCGRG	2 cut(s)	253, 542
BmgT120I	GGNCC	6 cut(s)	420, 475, 476, 484, 485, 552
BmiI	GGNNCC	6 cut(s)	324, 343, 415, 421, 477, 486
BmrFI	CCNGG	2 cut(s)	320, 418
BpiI	GAAGAC	2 cut(s)	461, 497
BpmI	CTGGAG	1 cut(s)	296
Bpu14I	TTCGAA	1 cut(s)	590
BpuMI	CCSGG	2 cut(s)	320, 418
BsaHI	GRCGYC	2 cut(s)	323, 458
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	379, 447, 555
BsaWI	WCCGGW	3 cut(s)	338, 426, 600
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 429, 549, 556
Bse118I	RCCGGY	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	508
BseAI	TCCGGA	2 cut(s)	338, 426
BseDI	CCNNGG	3 cut(s)	379, 447, 555
BseGI	GGATG	2 cut(s)	268, 423
BseLI	CCNNNNNNNGG	4 cut(s)	259, 429, 549, 556
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	596
BseRI	GAGGAG	9 cut(s)	16, 65, 100, 103, 161, 208, 671, 674, 677
BseSI	GKGCMC	3 cut(s)	437, 479, 488
BseXI	GCAGC	2 cut(s)	655, 679
BseYI	CCCAGC	1 cut(s)	199
Bsh1236I	CGCG	3 cut(s)	289, 381, 557
BshFI	GGCC	4 cut(s)	384, 477, 486, 553
BshNI	GGYRCC	1 cut(s)	322
BsiHKAI	GWGCWC	3 cut(s)	336, 437, 618
BsiHKCI	CYCGRG	2 cut(s)	253, 542
BsiSI	CCGG	8 cut(s)	320, 329, 339, 417, 427, 550, 601, 619
BslI	CCNNNNNNNGG	4 cut(s)	259, 429, 549, 556
BsmAI	GTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	4 cut(s)	384, 477, 486, 553
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	2 cut(s)	253, 542
Bsp119I	TTCGAA	1 cut(s)	590
Bsp120I	GGGCCC	2 cut(s)	475, 484
Bsp1286I	GDGCHC	6 cut(s)	336, 437, 479, 488, 566, 618
Bsp13I	TCCGGA	2 cut(s)	338, 426
Bsp143I	GATC	1 cut(s)	341
BspANI	GGCC	4 cut(s)	384, 477, 486, 553
BspCNI	CTCAG	1 cut(s)	595
BspEI	TCCGGA	2 cut(s)	338, 426
BspFNI	CGCG	3 cut(s)	289, 381, 557
BspLI	GGNNCC	6 cut(s)	324, 343, 415, 421, 477, 486
BspPI	GGATC	2 cut(s)	336, 349
BspT104I	TTCGAA	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	508
BsrFI	RCCGGY	1 cut(s)	549
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	379, 447, 555
BssMI	GATC	1 cut(s)	341
BssNI	GRCGYC	2 cut(s)	323, 458
Bst4CI	ACNGT	1 cut(s)	17
BstACI	GRCGYC	2 cut(s)	323, 458
BstAPI	GCANNNNNTGC	2 cut(s)	441, 507
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	3 cut(s)	508, 555, 562
BstDEI	CTNAG	1 cut(s)	582
BstDSI	CCRYGG	2 cut(s)	379, 555
BstF5I	GGATG	2 cut(s)	268, 423
BstFNI	CGCG	3 cut(s)	289, 381, 557
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	3 cut(s)	291, 325, 446
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	318, 416
BstSLI	GKGCMC	3 cut(s)	437, 479, 488
BstUI	CGCG	3 cut(s)	289, 381, 557
BstV1I	GCAGC	2 cut(s)	655, 679
BstV2I	GAAGAC	2 cut(s)	461, 497
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	4 cut(s)	384, 477, 486, 553
BtgI	CCRYGG	2 cut(s)	379, 555
BtsCI	GGATG	2 cut(s)	268, 423
BtsI	GCAGTG	2 cut(s)	439, 470
BtsIMutI	CAGTG	2 cut(s)	439, 470
Cac8I	GCNNGC	3 cut(s)	508, 555, 562
CfoI	GCGC	3 cut(s)	291, 325, 446
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	6 cut(s)	420, 475, 476, 484, 485, 552
Cfr42I	CCGCGG	2 cut(s)	382, 558
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	3 cut(s)	13, 539, 547
CviAII	CATG	2 cut(s)	10, 50
CviQI	GTAC	3 cut(s)	13, 539, 547
DdeI	CTNAG	1 cut(s)	582
DinI	GGCGCC	1 cut(s)	324
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	382
EciI	GGCGGA	2 cut(s)	284, 484
Ecl136II	GAGCTC	2 cut(s)	334, 616
Eco24I	GRGCYC	5 cut(s)	336, 479, 488, 566, 618
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	420
Eco53kI	GAGCTC	2 cut(s)	334, 616
Eco88I	CYCGRG	2 cut(s)	253, 542
EcoICRI	GAGCTC	2 cut(s)	334, 616
EcoT38I	GRGCYC	5 cut(s)	336, 479, 488, 566, 618
EgeI	GGCGCC	1 cut(s)	324
EheI	GGCGCC	1 cut(s)	324
FaeI	CATG	2 cut(s)	13, 53
FaiI	YATR	2 cut(s)	11, 51
FatI	CATG	2 cut(s)	9, 49
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	7 cut(s)	326, 382, 461, 558, 623, 644, 668
FokI	GGATG	2 cut(s)	275, 410
FriOI	GRGCYC	5 cut(s)	336, 479, 488, 566, 618
Fsp4HI	GCNGC	7 cut(s)	326, 382, 461, 558, 623, 644, 668
GlaI	GCGC	3 cut(s)	290, 324, 445
GluI	GCNGC	7 cut(s)	326, 382, 461, 558, 623, 644, 668
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	384, 477, 486, 553
HapII	CCGG	8 cut(s)	320, 329, 339, 417, 427, 550, 601, 619
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	3 cut(s)	291, 325, 446
Hin1I	GRCGYC	2 cut(s)	323, 458
Hin1II	CATG	2 cut(s)	13, 53
Hin6I	GCGC	3 cut(s)	289, 323, 444
HinP1I	GCGC	3 cut(s)	289, 323, 444
HinfI	GANTC	5 cut(s)	134, 302, 580, 650, 678
HpaII	CCGG	8 cut(s)	320, 329, 339, 417, 427, 550, 601, 619
HphI	GGTGA	4 cut(s)	226, 301, 619, 680
Hpy166II	GTNNAC	2 cut(s)	298, 435
Hpy188I	TCNGA	2 cut(s)	451, 655
Hpy188III	TCNNGA	3 cut(s)	253, 339, 427
Hpy8I	GTNNAC	2 cut(s)	298, 435
Hpy99I	CGWCG	4 cut(s)	71, 95, 571, 643
HpyAV	CCTTC	4 cut(s)	316, 404, 598, 622
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	3 cut(s)	211, 435, 501
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	1 cut(s)	569
Hsp92I	GRCGYC	2 cut(s)	323, 458
Hsp92II	CATG	2 cut(s)	13, 53
HspAI	GCGC	3 cut(s)	289, 323, 444
KasI	GGCGCC	1 cut(s)	322
Kpn2I	TCCGGA	2 cut(s)	338, 426
KspI	CCGCGG	2 cut(s)	382, 558
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	6 cut(s)	271, 331, 419, 613, 621, 664
Lsp1109I	GCAGC	2 cut(s)	655, 679
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	4 cut(s)	91, 466, 502, 677
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	6 cut(s)	336, 437, 479, 488, 566, 618
Mly113I	GGCGCC	1 cut(s)	323
MlyI	GAGTC	3 cut(s)	128, 296, 574
MmeI	TCCRAC	3 cut(s)	111, 129, 399
MroI	TCCGGA	2 cut(s)	338, 426
MslI	CAYNNNNRTG	1 cut(s)	693
MspA1I	CMGCKG	2 cut(s)	381, 557
MspI	CCGG	8 cut(s)	320, 329, 339, 417, 427, 550, 601, 619
MspR9I	CCNGG	2 cut(s)	320, 418
Mva1269I	GAATGC	1 cut(s)	586
MvnI	CGCG	3 cut(s)	289, 381, 557
NarI	GGCGCC	1 cut(s)	323
NciI	CCSGG	2 cut(s)	320, 418
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	2 cut(s)	13, 53
NlaIV	GGNNCC	6 cut(s)	324, 343, 415, 421, 477, 486
NspI	RCATGY	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	590
PciI	ACATGT	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	650, 678
PkrI	GCNGC	7 cut(s)	327, 383, 462, 559, 624, 645, 669
PleI	GAGTC	3 cut(s)	128, 296, 574
PluTI	GGCGCC	1 cut(s)	326
PpsI	GAGTC	3 cut(s)	128, 296, 574
PscI	ACATGT	1 cut(s)	9
Psp124BI	GAGCTC	2 cut(s)	336, 618
PspFI	CCCAGC	1 cut(s)	199
PspN4I	GGNNCC	6 cut(s)	324, 343, 415, 421, 477, 486
PspOMI	GGGCCC	2 cut(s)	475, 484
PspPI	GGNCC	6 cut(s)	420, 475, 476, 484, 485, 552
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	3 cut(s)	14, 540, 548
RsaNI	GTAC	3 cut(s)	13, 539, 547
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	2 cut(s)	336, 618
SacII	CCGCGG	2 cut(s)	382, 558
SatI	GCNGC	7 cut(s)	326, 382, 461, 558, 623, 644, 668
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	6 cut(s)	420, 475, 476, 484, 485, 552
SchI	GAGTC	3 cut(s)	128, 296, 574
ScrFI	CCNGG	2 cut(s)	320, 418
SduI	GDGCHC	6 cut(s)	336, 437, 479, 488, 566, 618
SfiI	GGCCNNNNNGGCC	1 cut(s)	483
SfoI	GGCGCC	1 cut(s)	324
Sfr303I	CCGCGG	2 cut(s)	382, 558
SfuI	TTCGAA	1 cut(s)	590
SgrBI	CCGCGG	2 cut(s)	382, 558
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	693
SspDI	GGCGCC	1 cut(s)	322
SstI	GAGCTC	2 cut(s)	336, 618
StyD4I	CCNGG	2 cut(s)	318, 416
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	4 cut(s)	66, 78, 590, 703
TauI	GCSGC	5 cut(s)	328, 384, 463, 560, 625
TfiI	GAWTC	2 cut(s)	650, 678
TscAI	CASTG	2 cut(s)	446, 470
TseI	GCWGC	2 cut(s)	643, 667
TspRI	CASTG	2 cut(s)	446, 470
VneI	GTGCAC	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	420
XceI	RCATGY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.