Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Forward (+)

13032459 .. 13033932

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1112200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAAGACTTCTTCCCCGTCGAAGACCTTCTGGATTTGTCAAACGACGCCCTTTTCTCCCCCTCCGCTGCTTCTTCCACCGATTCCATGGACCTCCACCACCATCCGCCGCCATCTGACCACCTCCACGGCACCACCACCACCACCTCCCCTTTCGCCCCCGCCACCACCTACACCGACTTCACCAACAACCTCTGTGTCCCTAGTGATGACGTGGCGGAACTGGAGTGGCTATCGCGCTTCGTCGACGACTCCTTTACCGACTTCCCCACCACCGACCTAACCGGTTCCGCATCCTTCCAAAACGAAGCGTCCTTCATGTTTCCCAGTCGGGTCCGCACCAAACGCTCCAAATGGGCCGGCCCGGCCGACCCCCAAAACTCCCCCGCGAGGCCCAACAGGCCTAAGAGAGAGCCGTCGGAAGCGTCCCCTTCACCGCTCAGGTGCACGCACTGCGCCTCGGAGAAGACGCCGCAGTGGCGGGCAGGACCGATGGGCCCCAAGACTCTCTGCAACGCGTGCGGGGTCCGGTACAAGTCGGGTCGGCTCGTGCCCGAGTACCGGCCGGCGGCGAGTCCGACCTTCGTGCTGACTCAGCACTCGAACTCGCACCGGAAGGTTCTGGAGCTCCGTCGCCAGAAGGAGGCTTCTCAGCAGCAGGCACCGCAAGAGCAACCACAGCAACACCGTCCGCATCAGCAGCAATTCTATCTTCACCGCGACGAGTTTCGAGTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

247

Amino Acids

27.71

Weight (kDa)

6.4

Isoelectric Point (pI)

65.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	149 - 183	3.2e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 661
AccBSI	CCGCTC	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	4 cut(s)	238, 389, 518, 720
AcoI	YGGCCR	2 cut(s)	366, 563
AcyI	GRCGYC	2 cut(s)	48, 470
AfaI	GTAC	2 cut(s)	533, 560
AfiI	CCNNNNNNNGG	4 cut(s)	390, 561, 568, 643
AflIII	ACRYGT	1 cut(s)	516
AgeI	ACCGGT	1 cut(s)	284
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	1 cut(s)	628
AluI	AGCT	1 cut(s)	628
Alw21I	GWGCWC	2 cut(s)	449, 630
Alw44I	GTGCAC	1 cut(s)	445
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	7 cut(s)	357, 361, 366, 392, 401, 496, 563
ApaI	GGGCCC	1 cut(s)	500
ApaLI	GTGCAC	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	68, 655, 700
AsiGI	ACCGGT	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	27
AspLEI	GCGC	2 cut(s)	240, 458
AspS9I	GGNCC	9 cut(s)	91, 334, 357, 362, 393, 488, 496, 497, 526
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	3 cut(s)	175, 426, 707
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	4 cut(s)	91, 334, 488, 526
BaeGI	GKGCMC	3 cut(s)	449, 500, 555
BanI	GGYRCC	2 cut(s)	131, 661
BanII	GRGCYC	2 cut(s)	500, 630
BauI	CACGAG	1 cut(s)	548
BbsI	GAAGAC	3 cut(s)	12, 30, 473
Bbv12I	GWGCWC	2 cut(s)	449, 630
BbvI	GCAGC	3 cut(s)	55, 667, 712
BccI	CCATC	3 cut(s)	111, 121, 487
BceAI	ACGGC	2 cut(s)	145, 400
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BcnI	CCSGG	1 cut(s)	365
BfaI	CTAG	1 cut(s)	204
BglI	GCCNNNNNGGC	3 cut(s)	365, 400, 478
BisI	GCNGC	6 cut(s)	69, 110, 473, 570, 656, 701
BlsI	GCNGC	6 cut(s)	70, 111, 474, 571, 657, 702
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	4 cut(s)	91, 334, 488, 526
BmeT110I	CYCGRG	1 cut(s)	554
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	9 cut(s)	91, 334, 357, 362, 393, 488, 496, 497, 526
BmiI	GGNNCC	7 cut(s)	133, 289, 335, 498, 499, 527, 663
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	302, 703
BmuI	ACTGGG	1 cut(s)	321
BpiI	GAAGAC	3 cut(s)	12, 30, 473
BpmI	CTGGAG	2 cut(s)	245, 644
Bpu10I	CCTNAGC	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	365
BsaHI	GRCGYC	2 cut(s)	48, 470
BsaJI	CCNNGG	3 cut(s)	87, 127, 459
BsaWI	WCCGGW	3 cut(s)	284, 528, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	390, 561, 568, 643
Bse118I	RCCGGY	4 cut(s)	284, 359, 561, 565
Bse1I	ACTGG	2 cut(s)	228, 327
BseDI	CCNNGG	3 cut(s)	87, 127, 459
BseGI	GGATG	2 cut(s)	103, 293
BseLI	CCNNNNNNNGG	4 cut(s)	390, 561, 568, 643
BseMII	CTCAG	3 cut(s)	454, 608, 665
BseNI	ACTGG	2 cut(s)	228, 327
BseSI	GKGCMC	3 cut(s)	449, 500, 555
BseX3I	CGGCCG	2 cut(s)	366, 563
BseXI	GCAGC	3 cut(s)	55, 667, 712
Bsh1236I	CGCG	4 cut(s)	238, 389, 518, 720
Bsh1285I	CGRYCG	2 cut(s)	369, 566
BshFI	GGCC	7 cut(s)	359, 363, 368, 394, 403, 498, 565
BshNI	GGYRCC	2 cut(s)	131, 661
BshTI	ACCGGT	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	369, 566
BsiHKAI	GWGCWC	2 cut(s)	449, 630
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	7 cut(s)	285, 360, 365, 529, 562, 566, 613
BslFI	GGGAC	2 cut(s)	185, 412
BslI	CCNNNNNNNGG	4 cut(s)	390, 561, 568, 643
BsmFI	GGGAC	2 cut(s)	185, 412
BsnI	GGCC	7 cut(s)	359, 363, 368, 394, 403, 498, 565
BsoBI	CYCGRG	1 cut(s)	554
Bsp120I	GGGCCC	1 cut(s)	496
Bsp1286I	GDGCHC	4 cut(s)	449, 500, 555, 630
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	7 cut(s)	359, 363, 368, 394, 403, 498, 565
BspCNI	CTCAG	3 cut(s)	453, 607, 664
BspFNI	CGCG	4 cut(s)	238, 389, 518, 720
BspLI	GGNNCC	7 cut(s)	133, 289, 335, 498, 499, 527, 663
BspT107I	GGYRCC	2 cut(s)	131, 661
BsrBI	CCGCTC	1 cut(s)	439
BsrFI	RCCGGY	4 cut(s)	284, 359, 561, 565
BsrI	ACTGG	2 cut(s)	228, 327
BssAI	RCCGGY	4 cut(s)	284, 359, 561, 565
BssECI	CCNNGG	3 cut(s)	87, 127, 459
BssNI	GRCGYC	2 cut(s)	48, 470
BssSI	CACGAG	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	689
BstACI	GRCGYC	2 cut(s)	48, 470
BstAPI	GCANNNNNTGC	2 cut(s)	453, 519
BstC8I	GCNNGC	6 cut(s)	361, 449, 483, 520, 567, 660
BstDEI	CTNAG	4 cut(s)	405, 440, 594, 651
BstDSI	CCRYGG	2 cut(s)	87, 127
BstF5I	GGATG	2 cut(s)	103, 293
BstFNI	CGCG	4 cut(s)	238, 389, 518, 720
BstHHI	GCGC	2 cut(s)	240, 458
BstMCI	CGRYCG	2 cut(s)	369, 566
BstSCI	CCNGG	1 cut(s)	363
BstSLI	GKGCMC	3 cut(s)	449, 500, 555
BstUI	CGCG	4 cut(s)	238, 389, 518, 720
BstV1I	GCAGC	3 cut(s)	55, 667, 712
BstV2I	GAAGAC	3 cut(s)	12, 30, 473
BstZI	CGGCCG	2 cut(s)	366, 563
BsuRI	GGCC	7 cut(s)	359, 363, 368, 394, 403, 498, 565
BtgI	CCRYGG	2 cut(s)	87, 127
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	103, 293
BtsI	GCAGTG	2 cut(s)	451, 482
BtsIMutI	CAGTG	2 cut(s)	451, 482
Cac8I	GCNNGC	6 cut(s)	361, 449, 483, 520, 567, 660
CfoI	GCGC	2 cut(s)	240, 458
Cfr10I	RCCGGY	4 cut(s)	284, 359, 561, 565
Cfr13I	GGNCC	9 cut(s)	91, 334, 357, 362, 393, 488, 496, 497, 526
CseI	GACGC	4 cut(s)	56, 300, 414, 478
Csp6I	GTAC	2 cut(s)	532, 559
CspAI	ACCGGT	1 cut(s)	284
CviAII	CATG	2 cut(s)	88, 319
CviQI	GTAC	2 cut(s)	532, 559
DdeI	CTNAG	4 cut(s)	405, 440, 594, 651
EaeI	YGGCCR	2 cut(s)	366, 563
EagI	CGGCCG	2 cut(s)	366, 563
EciI	GGCGGA	2 cut(s)	96, 233
Ecl136II	GAGCTC	1 cut(s)	628
EclXI	CGGCCG	2 cut(s)	366, 563
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	403
Eco24I	GRGCYC	2 cut(s)	500, 630
Eco47I	GGWCC	4 cut(s)	91, 334, 488, 526
Eco52I	CGGCCG	2 cut(s)	366, 563
Eco53kI	GAGCTC	1 cut(s)	628
Eco88I	CYCGRG	1 cut(s)	554
EcoICRI	GAGCTC	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	2 cut(s)	500, 630
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	91, 322
FaiI	YATR	2 cut(s)	89, 320
FaqI	GGGAC	2 cut(s)	185, 412
FatI	CATG	2 cut(s)	87, 318
FauI	CCCGC	4 cut(s)	169, 394, 474, 515
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	6 cut(s)	69, 110, 473, 570, 656, 701
FokI	GGATG	2 cut(s)	90, 280
FriOI	GRGCYC	2 cut(s)	500, 630
FseI	GGCCGGCC	1 cut(s)	363
Fsp4HI	GCNGC	6 cut(s)	69, 110, 473, 570, 656, 701
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	239, 457
GluI	GCNGC	6 cut(s)	69, 110, 473, 570, 656, 701
GsuI	CTGGAG	2 cut(s)	245, 644
HaeIII	GGCC	7 cut(s)	359, 363, 368, 394, 403, 498, 565
HapII	CCGG	7 cut(s)	285, 360, 365, 529, 562, 566, 613
HgaI	GACGC	4 cut(s)	56, 300, 414, 478
HhaI	GCGC	2 cut(s)	240, 458
Hin1I	GRCGYC	2 cut(s)	48, 470
Hin1II	CATG	2 cut(s)	91, 322
Hin6I	GCGC	2 cut(s)	238, 456
HinP1I	GCGC	2 cut(s)	238, 456
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	5 cut(s)	83, 251, 505, 574, 592
HpaII	CCGG	7 cut(s)	285, 360, 365, 529, 562, 566, 613
HphI	GGTGA	3 cut(s)	175, 426, 707
Hpy166II	GTNNAC	2 cut(s)	247, 447
Hpy188I	TCNGA	4 cut(s)	118, 421, 463, 579
Hpy188III	TCNNGA	2 cut(s)	32, 623
Hpy8I	GTNNAC	2 cut(s)	247, 447
Hpy99I	CGWCG	7 cut(s)	23, 50, 248, 251, 421, 636, 725
HpyAV	CCTTC	7 cut(s)	38, 307, 325, 441, 592, 610, 634
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	447, 513
HpyF3I	CTNAG	4 cut(s)	405, 440, 594, 651
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	2 cut(s)	48, 470
Hsp92II	CATG	2 cut(s)	91, 322
HspAI	GCGC	2 cut(s)	238, 456
KroI	GCCGGC	2 cut(s)	359, 565
KroNI	GCCGGC	2 cut(s)	361, 567
LmnI	GCTCC	3 cut(s)	353, 625, 633
Lsp1109I	GCAGC	3 cut(s)	55, 667, 712
LweI	GCATC	2 cut(s)	302, 703
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	439
MboII	GAAGA	6 cut(s)	4, 17, 35, 66, 478, 704
MhlI	GDGCHC	4 cut(s)	449, 500, 555, 630
MluCI	AATT	1 cut(s)	704
MluI	ACGCGT	1 cut(s)	516
MlyI	GAGTC	4 cut(s)	245, 499, 583, 586
MmeI	TCCRAC	2 cut(s)	399, 602
MnlI	CCTC	8 cut(s)	73, 104, 134, 157, 203, 384, 469, 637
MroNI	GCCGGC	2 cut(s)	359, 565
MroXI	GAANNNNTTC	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	7 cut(s)	285, 360, 365, 529, 562, 566, 613
MspR9I	CCNGG	1 cut(s)	365
MvnI	CGCG	4 cut(s)	238, 389, 518, 720
NaeI	GCCGGC	2 cut(s)	361, 567
NciI	CCSGG	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	87
NgoMIV	GCCGGC	2 cut(s)	359, 565
NlaIII	CATG	2 cut(s)	91, 322
NlaIV	GGNNCC	7 cut(s)	133, 289, 335, 498, 499, 527, 663
PceI	AGGCCT	1 cut(s)	403
PdiI	GCCGGC	2 cut(s)	361, 567
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	284
PkrI	GCNGC	6 cut(s)	70, 111, 474, 571, 657, 702
PleI	GAGTC	4 cut(s)	245, 499, 582, 586
PpsI	GAGTC	4 cut(s)	245, 499, 582, 586
Psp124BI	GAGCTC	1 cut(s)	630
PspN4I	GGNNCC	7 cut(s)	133, 289, 335, 498, 499, 527, 663
PspOMI	GGGCCC	1 cut(s)	496
PspPI	GGNCC	9 cut(s)	91, 334, 357, 362, 393, 488, 496, 497, 526
RigI	GGCCGGCC	1 cut(s)	363
RsaI	GTAC	2 cut(s)	533, 560
RsaNI	GTAC	2 cut(s)	532, 559
SacI	GAGCTC	1 cut(s)	630
SalI	GTCGAC	1 cut(s)	245
SatI	GCNGC	6 cut(s)	69, 110, 473, 570, 656, 701
Sau96I	GGNCC	9 cut(s)	91, 334, 357, 362, 393, 488, 496, 497, 526
SchI	GAGTC	4 cut(s)	245, 499, 583, 586
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	4 cut(s)	449, 500, 555, 630
SfaNI	GCATC	2 cut(s)	302, 703
SfiI	GGCCNNNNNGGCC	2 cut(s)	365, 400
SgrDI	CGTCGACG	1 cut(s)	245
SinI	GGWCC	4 cut(s)	91, 334, 488, 526
Sse9I	AATT	1 cut(s)	704
SseBI	AGGCCT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	630
StuI	AGGCCT	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	4 cut(s)	21, 246, 602, 730
TaqII	GACCGA	1 cut(s)	505
TasI	AATT	1 cut(s)	704
TauI	GCSGC	3 cut(s)	112, 475, 572
TfiI	GAWTC	1 cut(s)	83
TscAI	CASTG	2 cut(s)	458, 482
TseI	GCWGC	3 cut(s)	68, 655, 700
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	2 cut(s)	458, 482
VneI	GTGCAC	1 cut(s)	445
VpaK11BI	GGWCC	4 cut(s)	91, 334, 488, 526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.