Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015964

Physical Location & Seq

Genomic Coordinates Forward (+)

10077240 .. 10078596

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAGGACATGTACGGACTACCCTCCTCCTCATCATCAGCCCAACCGCAAGTCGACTACTTCCCCATCGACGACCTCCTCGACTTATCCAACGACGAAATCTTCTCCAACTCCTCCTCCACTTCCTCCGCCGACTCCCACCCTCACTACTTCCCTCCACCTCCTCCCCCAGCTGGTCTCTTCAACCCCACCGCCTCCACCGACTTCACCAACGCCCTCTGCCTCCCGAGCGAGGACGTAGCGGAACTGGAATGGCTGTCGCGGTTCGTGGACGATTCATTCACCGACTTCCCACCCCCGGAGCTGCCGCTTCCCAACGACAAGTCGTTTTCGAATCCCAACCGACCCCATAATACCAAGCCCGTTTGCCGTGAGGAAAACCCGGAGCCGATTCGTCGGTGCACGCACTGCGCGTCGGAGAAGACGCCGCAGTGGAGGACGGGTCCATTGGGCCCGAAGACGCTGTGCAATGCCTGTGGGGTTCGATACAAGTCGGGTCGGCTCGTGCCCGAGTATCGGCCCGCGGCAAGCCCGACGTTCGTGCTGACTCAGCATTCTAACTCGCACCGGAAGGTGATGGAGCTTCGTCGGCAGAAGGAGGTGTCGTCGTCGTCGCAGCAGCAGCAGCAAGCGGAGGAGGAGGAGCAGCAGAGGCGATTCTATCTTCACCCGAACGCGTTTCGGGTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

231

Amino Acids

25.95

Weight (kDa)

5.37

Isoelectric Point (pI)

74.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	134 - 168	8.7e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45050 AT3G60530
fragaria_vesca	FvH4_7g10740
malus_domestica	MD07G1112200.v1.1
prunus_persica	Prupe.2G135400_v2.0.a1
pyrus_communis	pycom07g09710
rosa_chinensis	RchiOBHm_Chr1g0348681
rosa_laevigata	RLG00000028630
rosa_roxburghii	Rroxscaffold_4G00306760
rosa_rugosa	Rorug01G0196700
rosa_samantha	Rh1AG214100 Rh1BG180600 Rh1CG198700 Rh1DG210600
rosa_wichuraiana	Rw1G018130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	4 cut(s)	262, 413, 524, 677
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	4 cut(s)	173, 232, 298, 516
AflIII	ACRYGT	2 cut(s)	9, 675
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	3 cut(s)	173, 304, 583
AluI	AGCT	3 cut(s)	173, 304, 583
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	182
Alw44I	GTGCAC	1 cut(s)	400
Ama87I	CYCGRG	2 cut(s)	226, 509
AoxI	GGCC	2 cut(s)	451, 518
ApaI	GGGCCC	1 cut(s)	455
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	6 cut(s)	304, 616, 619, 622, 625, 646
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	4 cut(s)	443, 451, 452, 519
AsuC2I	CCSGG	2 cut(s)	299, 383
AsuHPI	GGTGA	4 cut(s)	199, 274, 586, 659
AsuII	TTCGAA	1 cut(s)	332
AvaI	CYCGRG	2 cut(s)	226, 509
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	3 cut(s)	404, 455, 510
BanII	GRGCYC	1 cut(s)	455
BauI	CACGAG	1 cut(s)	503
BbsI	GAAGAC	2 cut(s)	428, 464
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	6 cut(s)	291, 628, 631, 634, 637, 658
BccI	CCATC	2 cut(s)	74, 571
BceAI	ACGGC	1 cut(s)	354
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BcnI	CCSGG	2 cut(s)	299, 383
BcoDI	GTCTC	1 cut(s)	182
BisI	GCNGC	9 cut(s)	305, 308, 428, 525, 617, 620, 623, 626, 647
BlsI	GCNGC	9 cut(s)	306, 309, 429, 526, 618, 621, 624, 627, 648
Bme1390I	CCNGG	2 cut(s)	299, 383
Bme18I	GGWCC	1 cut(s)	443
BmeT110I	CYCGRG	2 cut(s)	226, 509
BmgT120I	GGNCC	4 cut(s)	443, 451, 452, 519
BmiI	GGNNCC	3 cut(s)	387, 444, 453
BmrFI	CCNGG	2 cut(s)	299, 383
BpiI	GAAGAC	2 cut(s)	428, 464
Bpu14I	TTCGAA	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	299, 383
BsaHI	GRCGYC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	297, 522
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	7 cut(s)	26, 101, 131, 427, 457, 590, 620
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 232, 298, 516
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	297, 522
BseLI	CCNNNNNNNGG	4 cut(s)	173, 232, 298, 516
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	9 cut(s)	16, 19, 68, 103, 106, 153, 650, 653, 656
BseSI	GKGCMC	3 cut(s)	404, 455, 510
BseXI	GCAGC	6 cut(s)	291, 628, 631, 634, 637, 658
BseYI	CCCAGC	1 cut(s)	169
Bsh1236I	CGCG	4 cut(s)	262, 413, 524, 677
BshFI	GGCC	2 cut(s)	453, 520
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	2 cut(s)	226, 509
BsiSI	CCGG	3 cut(s)	299, 383, 568
BslI	CCNNNNNNNGG	4 cut(s)	173, 232, 298, 516
BsmAI	GTCTC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	453, 520
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	2 cut(s)	226, 509
Bsp119I	TTCGAA	1 cut(s)	332
Bsp120I	GGGCCC	1 cut(s)	451
Bsp1286I	GDGCHC	3 cut(s)	404, 455, 510
BspANI	GGCC	2 cut(s)	453, 520
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	4 cut(s)	262, 413, 524, 677
BspLI	GGNNCC	3 cut(s)	387, 444, 453
BspT104I	TTCGAA	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	475
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	297, 522
BssNI	GRCGYC	1 cut(s)	425
BssSI	CACGAG	1 cut(s)	503
Bst2BI	CACGAG	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	4 cut(s)	404, 522, 529, 630
BstDEI	CTNAG	1 cut(s)	549
BstDSI	CCRYGG	1 cut(s)	522
BstFNI	CGCG	4 cut(s)	262, 413, 524, 677
BstHHI	GCGC	1 cut(s)	413
BstMAI	GTCTC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	7 cut(s)	228, 408, 550, 589, 622, 625, 652
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	297, 381
BstSLI	GKGCMC	3 cut(s)	404, 455, 510
BstUI	CGCG	4 cut(s)	262, 413, 524, 677
BstV1I	GCAGC	6 cut(s)	291, 628, 631, 634, 637, 658
BstV2I	GAAGAC	2 cut(s)	428, 464
BsuRI	GGCC	2 cut(s)	453, 520
BtgI	CCRYGG	1 cut(s)	522
BtsI	GCAGTG	2 cut(s)	406, 437
BtsIMutI	CAGTG	2 cut(s)	406, 437
Cac8I	GCNNGC	4 cut(s)	404, 522, 529, 630
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	4 cut(s)	443, 451, 452, 519
Cfr42I	CCGCGG	1 cut(s)	525
CseI	GACGC	3 cut(s)	402, 433, 469
Csp6I	GTAC	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	1 cut(s)	443
Eco88I	CYCGRG	2 cut(s)	226, 509
EcoT38I	GRGCYC	1 cut(s)	455
FaeI	CATG	1 cut(s)	13
FaiI	YATR	2 cut(s)	11, 351
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	9 cut(s)	305, 308, 428, 525, 617, 620, 623, 626, 647
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	9 cut(s)	305, 308, 428, 525, 617, 620, 623, 626, 647
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	9 cut(s)	305, 308, 428, 525, 617, 620, 623, 626, 647
GsaI	CCCAGC	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	453, 520
HapII	CCGG	3 cut(s)	299, 383, 568
HgaI	GACGC	3 cut(s)	402, 433, 469
HhaI	GCGC	1 cut(s)	413
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	6 cut(s)	134, 275, 334, 391, 547, 657
HpaII	CCGG	3 cut(s)	299, 383, 568
HphI	GGTGA	4 cut(s)	199, 274, 586, 659
Hpy166II	GTNNAC	3 cut(s)	55, 271, 402
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	2 cut(s)	226, 690
Hpy8I	GTNNAC	3 cut(s)	55, 271, 402
Hpy99I	CGWCG	9 cut(s)	74, 98, 399, 418, 538, 591, 610, 613, 616
HpyAV	CCTTC	2 cut(s)	565, 589
HpyCH4IV	ACGT	2 cut(s)	237, 536
HpyCH4V	TGCA	2 cut(s)	402, 468
HpyF10VI	GCNNNNNNNGC	7 cut(s)	228, 408, 550, 589, 622, 625, 652
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	2 cut(s)	237, 536
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	411
KspI	CCGCGG	1 cut(s)	525
LmnI	GCTCC	4 cut(s)	301, 385, 580, 643
LpnPI	CCDG	7 cut(s)	159, 183, 233, 312, 396, 487, 581
Lsp1109I	GCAGC	6 cut(s)	291, 628, 631, 634, 637, 658
MaeII	ACGT	2 cut(s)	237, 536
MboII	GAAGA	5 cut(s)	94, 172, 433, 469, 656
MhlI	GDGCHC	3 cut(s)	404, 455, 510
MluI	ACGCGT	1 cut(s)	675
MlyI	GAGTC	2 cut(s)	128, 541
MmeI	TCCRAC	3 cut(s)	114, 132, 396
MspA1I	CMGCKG	2 cut(s)	173, 524
MspI	CCGG	3 cut(s)	299, 383, 568
MspR9I	CCNGG	2 cut(s)	299, 383
Mva1269I	GAATGC	1 cut(s)	553
MvnI	CGCG	4 cut(s)	262, 413, 524, 677
MwoI	GCNNNNNNNGC	7 cut(s)	228, 408, 550, 589, 622, 625, 652
NciI	CCSGG	2 cut(s)	299, 383
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	3 cut(s)	387, 444, 453
NspI	RCATGY	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	332
PciI	ACATGT	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 410
PctI	GAATGC	1 cut(s)	553
PfeI	GAWTC	4 cut(s)	275, 334, 391, 657
PkrI	GCNGC	9 cut(s)	306, 309, 429, 526, 618, 621, 624, 627, 648
PleI	GAGTC	2 cut(s)	128, 541
PpsI	GAGTC	2 cut(s)	128, 541
PscI	ACATGT	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	387, 444, 453
PspOMI	GGGCCC	1 cut(s)	451
PspPI	GGNCC	4 cut(s)	443, 451, 452, 519
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	525
SalI	GTCGAC	1 cut(s)	53
SatI	GCNGC	9 cut(s)	305, 308, 428, 525, 617, 620, 623, 626, 647
Sau96I	GGNCC	4 cut(s)	443, 451, 452, 519
SchI	GAGTC	2 cut(s)	128, 541
ScrFI	CCNGG	2 cut(s)	299, 383
SduI	GDGCHC	3 cut(s)	404, 455, 510
SetI	ASST	9 cut(s)	78, 163, 175, 240, 306, 539, 576, 585, 603
Sfr303I	CCGCGG	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	332
SgrBI	CCGCGG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	297, 381
TaiI	ACGT	2 cut(s)	240, 539
TaqI	TCGA	5 cut(s)	54, 69, 81, 332, 484
TauI	GCSGC	3 cut(s)	310, 430, 527
TfiI	GAWTC	4 cut(s)	275, 334, 391, 657
TscAI	CASTG	2 cut(s)	413, 437
TseI	GCWGC	6 cut(s)	304, 616, 619, 622, 625, 646
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	413, 437
VneI	GTGCAC	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	443
XceI	RCATGY	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.