AT2G45280

DNA repair protein RAD51 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
18670009 .. 18672469
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45280.2

Sequence Viewer

Length: 1092 bp
ATGATTTCATTTGGGCGGCGTAAATCGCCGGCGATTGAAGAAACTTCACTCGCGACTTCAGTCATGGAGGCATGGAGGTTACCGTTATCGCCTTCGATTAGAGGAAAACTGATATCGGCCGGTTATACTTGTCTGTCTTCGATTGCTTCCGTCTCTTCTTCTGATCTCGCTCGAGATGCAAATATCACAGAGGAGGAAGCATTTGAGATTTTGAAGCTGGCTAATCAAAGTTGTTGCAATGGAAGCCGTTCACTCATAAATGGAGCAAAGAACGCTTGGGATATGCTTCACGAGGAGGAGTCTTTGCCGCGTATTACTACATCTTGCTCTGATCTTGATAACATTTTGGGCGGTGGAATTAGCTGTAGGGATGTTACAGAGATTGGTGGGGTACCAGGGATTGGCAAGACTCAGATTGGGATCCAGCTCTCTGTGAATGTTCAGATTCCACGTGAGTGTGGTGGTCTTGGAGGGAAAGCTATATATATCGATACAGAAGGTAGCTTCATGGTGGAGCGTGCTTTACAGATAGCAGAAGCTTGTGTAGAGGACATGGAAGAATACACAGGATACATGCATAAACATTTTCAAGCAAATCAAGTACAAATGAAACCAGAAGATATCTTAGAGAACATATTCTACTTCCGTGTCTGCAGTTACACCGAGCAAATCGCATTGGTCAATCATCTTGAAAAGTTCATCTCTGAAAACAAAGATGTTAAAGTTGTAATCGTAGACAGTATCACCTTTCATTTCCGTCAGGACTATGATGACTTAGCCCAGAGGACACGAGTGCTCAGCGAAATGGCTTTAAAGTTCATGAAGCTTGCCAAAAAGTTCTCACTTGCGGTCGTGTTACTAAACCAGGTGACCACAAAGTTTAGTGAAGGCTCGTTTCAACTAGCGCTTGCTTTAGGCGATAGCTGGTCTCATTCGTGCACCAACCGAGTCATTCTGTATTGGAATGGTGATGAGCGTTACGCATATATCGATAAGTCCCCTTCACTTCCTTCAGCTTCGGCTTCATACACTGTAACCAGTAGAGGTCTAAGAAACTCATCCTCGAGTAGCAAGCGAGTCAAGATGATGTAA

Protein Analysis

363

Amino Acids

40.21

Weight (kDa)

5.79

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 126 - 206 2.2e-19 Rad51
DnaB_C PF03796 129 - 317 2.6e-10 DnaB-like helicase C terminal domain
ATPase PF06745 131 - 313 4.9e-07 KaiC
Rad51 PF08423 222 - 375 1.6e-20 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 401
AccI GTMKAC 1 cut(s) 735
AccII CGCG 2 cut(s) 53, 310
AciI CCGC 4 cut(s) 16, 308, 351, 848
AclWI GGATC 2 cut(s) 415, 428
AcoI YGGCCR 1 cut(s) 117
AcuI CTGAAG 2 cut(s) 42, 996
AcvI CACGTG 1 cut(s) 452
AfaI GTAC 2 cut(s) 393, 603
AfeI AGCGCT 1 cut(s) 906
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 5 cut(s) 38, 214, 590, 692, 899
AjnI CCWGG 2 cut(s) 394, 864
AleI CACNNNNGTG 1 cut(s) 454
AluBI AGCT 9 cut(s) 217, 363, 427, 479, 504, 539, 826, 924, 1016
AluI AGCT 9 cut(s) 217, 363, 427, 479, 504, 539, 826, 924, 1016
Alw21I GWGCWC 2 cut(s) 798, 941
Alw26I GTCTC 2 cut(s) 157, 933
Alw44I GTGCAC 1 cut(s) 937
AlwI GGATC 2 cut(s) 415, 428
Ama87I CYCGRG 2 cut(s) 171, 1063
Aor51HI AGCGCT 1 cut(s) 906
AoxI GGCC 1 cut(s) 117
ApaLI GTGCAC 1 cut(s) 937
Asp700I GAANNNNTTC 2 cut(s) 247, 635
Asp718I GGTACC 1 cut(s) 391
AspLEI GCGC 1 cut(s) 907
AsuHPI GGTGA 3 cut(s) 736, 880, 980
AvaI CYCGRG 2 cut(s) 171, 1063
BaeGI GKGCMC 1 cut(s) 941
BamHI GGATCC 1 cut(s) 420
BanI GGYRCC 1 cut(s) 391
BauI CACGAG 2 cut(s) 290, 789
BbrPI CACGTG 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 798, 941
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 2 cut(s) 396, 866
BciVI GTATCC 1 cut(s) 563
BcoDI GTCTC 2 cut(s) 157, 933
BfaI CTAG 1 cut(s) 902
BfmI CTRYAG 2 cut(s) 364, 652
BfoI RGCGCY 1 cut(s) 908
BfuI GTATCC 1 cut(s) 563
BisI GCNGC 2 cut(s) 17, 308
BlpI GCTNAGC 1 cut(s) 797
BlsI GCNGC 2 cut(s) 18, 309
Bme1390I CCNGG 2 cut(s) 396, 866
BmeT110I CYCGRG 2 cut(s) 171, 1063
BmiI GGNNCC 2 cut(s) 393, 422
BmrFI CCNGG 2 cut(s) 396, 866
BmsI GCATC 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 797
Bsa29I ATCGAT 2 cut(s) 489, 990
BsaAI YACGTR 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 933
BsaJI CCNNGG 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 2 cut(s) 28, 119
Bse1I ACTGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 419
BseBI CCWGG 2 cut(s) 396, 866
BseCI ATCGAT 2 cut(s) 489, 990
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 2 cut(s) 376, 1058
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 425, 811
BseNI ACTGG 1 cut(s) 1038
BseRI GAGGAG 3 cut(s) 206, 308, 311
BseSI GKGCMC 1 cut(s) 941
BseX3I CGGCCG 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 53, 310
Bsh1285I CGRYCG 2 cut(s) 120, 852
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 391
BshVI ATCGAT 2 cut(s) 489, 990
BsiEI CGRYCG 2 cut(s) 120, 852
BsiHKAI GWGCWC 2 cut(s) 798, 941
BsiHKCI CYCGRG 2 cut(s) 171, 1063
BsiSI CCGG 2 cut(s) 29, 120
BslFI GGGAC 1 cut(s) 982
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 2 cut(s) 157, 933
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 982
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 933
BsoBI CYCGRG 2 cut(s) 171, 1063
Bsp1286I GDGCHC 2 cut(s) 798, 941
Bsp143I GATC 3 cut(s) 163, 331, 420
Bsp1720I GCTNAGC 1 cut(s) 797
Bsp68I TCGCGA 1 cut(s) 53
BspACI CCGC 4 cut(s) 16, 308, 351, 848
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 2 cut(s) 424, 810
BspDI ATCGAT 2 cut(s) 489, 990
BspFNI CGCG 2 cut(s) 53, 310
BspHI TCATGA 1 cut(s) 819
BspLI GGNNCC 2 cut(s) 393, 422
BspMAI CTGCAG 1 cut(s) 656
BspPI GGATC 2 cut(s) 415, 428
BspT107I GGYRCC 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 244
BsrFI RCCGGY 2 cut(s) 28, 119
BsrI ACTGG 1 cut(s) 1038
BssAI RCCGGY 2 cut(s) 28, 119
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 3 cut(s) 163, 331, 420
BssSI CACGAG 2 cut(s) 290, 789
Bst2BI CACGAG 2 cut(s) 290, 789
Bst2UI CCWGG 2 cut(s) 396, 866
Bst4CI ACNGT 3 cut(s) 84, 740, 1033
Bst6I CTCTTC 1 cut(s) 160
BstBAI YACGTR 1 cut(s) 452
BstC8I GCNNGC 6 cut(s) 30, 219, 519, 828, 909, 1073
BstDEI CTNAG 5 cut(s) 411, 625, 775, 797, 1049
BstEII GGTNACC 2 cut(s) 78, 868
BstF5I GGATG 2 cut(s) 376, 1058
BstFNI CGCG 2 cut(s) 53, 310
BstH2I RGCGCY 1 cut(s) 908
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 3 cut(s) 166, 334, 423
BstMAI GTCTC 2 cut(s) 157, 933
BstMBI GATC 3 cut(s) 163, 331, 420
BstMCI CGRYCG 2 cut(s) 120, 852
BstMWI GCNNNNNNNGC 4 cut(s) 25, 176, 243, 272
BstNI CCWGG 2 cut(s) 396, 866
BstNSI RCATGY 1 cut(s) 577
BstPAI GACNNNNGTC 1 cut(s) 59
BstPI GGTNACC 2 cut(s) 78, 868
BstSCI CCNGG 2 cut(s) 394, 864
BstSFI CTRYAG 2 cut(s) 364, 652
BstSLI GKGCMC 1 cut(s) 941
BstUI CGCG 2 cut(s) 53, 310
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BstZI CGGCCG 1 cut(s) 117
Bsu15I ATCGAT 2 cut(s) 489, 990
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 1 cut(s) 119
BsuTUI ATCGAT 2 cut(s) 489, 990
BtsCI GGATG 2 cut(s) 376, 1058
BtsIMutI CAGTG 1 cut(s) 1029
BtuMI TCGCGA 1 cut(s) 53
Cac8I GCNNGC 6 cut(s) 30, 219, 519, 828, 909, 1073
CciI TCATGA 1 cut(s) 819
CfoI GCGC 1 cut(s) 907
Cfr10I RCCGGY 2 cut(s) 28, 119
ClaI ATCGAT 2 cut(s) 489, 990
CsiI ACCWGGT 1 cut(s) 864
Csp6I GTAC 2 cut(s) 392, 602
CviAII CATG 6 cut(s) 64, 72, 508, 553, 574, 820
CviQI GTAC 2 cut(s) 392, 602
DdeI CTNAG 5 cut(s) 411, 625, 775, 797, 1049
DpnI GATC 3 cut(s) 165, 333, 422
DpnII GATC 3 cut(s) 163, 331, 420
DraI TTTAAA 1 cut(s) 813
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 933
Eco32I GATATC 2 cut(s) 114, 622
Eco47III AGCGCT 1 cut(s) 906
Eco52I CGGCCG 1 cut(s) 117
Eco57I CTGAAG 2 cut(s) 42, 996
Eco72I CACGTG 1 cut(s) 452
Eco88I CYCGRG 2 cut(s) 171, 1063
Eco91I GGTNACC 2 cut(s) 78, 868
EcoO65I GGTNACC 2 cut(s) 78, 868
EcoRII CCWGG 2 cut(s) 394, 864
EcoRV GATATC 2 cut(s) 114, 622
EcoT22I ATGCAT 1 cut(s) 579
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 6 cut(s) 67, 75, 511, 556, 577, 823
FaqI GGGAC 1 cut(s) 982
FatI CATG 6 cut(s) 63, 71, 507, 552, 573, 819
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 2 cut(s) 17, 308
FokI GGATG 2 cut(s) 383, 1045
Fsp4HI GCNGC 2 cut(s) 17, 308
FspBI CTAG 1 cut(s) 902
GlaI GCGC 1 cut(s) 906
GluI GCNGC 2 cut(s) 17, 308
HaeII RGCGCY 1 cut(s) 908
HaeIII GGCC 1 cut(s) 119
HapII CCGG 2 cut(s) 29, 120
HhaI GCGC 1 cut(s) 907
Hin1II CATG 6 cut(s) 67, 75, 511, 556, 577, 823
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HindIII AAGCTT 2 cut(s) 537, 824
HinfI GANTC 5 cut(s) 299, 409, 445, 948, 1077
HpaII CCGG 2 cut(s) 29, 120
HphI GGTGA 3 cut(s) 736, 880, 980
Hpy166II GTNNAC 3 cut(s) 251, 736, 939
Hpy188I TCNGA 5 cut(s) 163, 331, 414, 444, 706
Hpy188III TCNNGA 8 cut(s) 52, 173, 290, 335, 689, 761, 820, 1081
Hpy8I GTNNAC 3 cut(s) 251, 736, 939
HpyAV CCTTC 5 cut(s) 102, 491, 881, 1011, 1020
HpyCH4III ACNGT 3 cut(s) 84, 740, 1033
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 5 cut(s) 179, 237, 577, 654, 939
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 176, 243, 272
HpyF3I CTNAG 5 cut(s) 411, 625, 775, 797, 1049
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 6 cut(s) 67, 75, 511, 556, 577, 823
HspAI GCGC 1 cut(s) 905
KpnI GGTACC 1 cut(s) 395
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 3 cut(s) 163, 331, 420
LmnI GCTCC 2 cut(s) 263, 514
LweI GCATC 1 cut(s) 166
MabI ACCWGGT 1 cut(s) 864
MaeI CTAG 1 cut(s) 902
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 7 cut(s) 78, 373, 656, 855, 868, 977, 1033
MalI GATC 3 cut(s) 165, 333, 422
MboI GATC 3 cut(s) 163, 331, 420
MboII GAAGA 6 cut(s) 50, 129, 147, 150, 569, 629
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 798, 941
MluCI AATT 1 cut(s) 357
MlyI GAGTC 4 cut(s) 308, 403, 957, 1086
Mph1103I ATGCAT 1 cut(s) 579
MreI CGCCGGCG 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 2 cut(s) 247, 635
MseI TTAA 2 cut(s) 720, 812
MslI CAYNNNNRTG 1 cut(s) 454
MspI CCGG 2 cut(s) 29, 120
MspR9I CCNGG 2 cut(s) 396, 866
MvaI CCWGG 2 cut(s) 396, 866
MvnI CGCG 2 cut(s) 53, 310
MwoI GCNNNNNNNGC 4 cut(s) 25, 176, 243, 272
NaeI GCCGGC 1 cut(s) 30
NdeII GATC 3 cut(s) 163, 331, 420
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 6 cut(s) 67, 75, 511, 556, 577, 823
NlaIV GGNNCC 2 cut(s) 393, 422
NmuCI GTSAC 1 cut(s) 868
NruI TCGCGA 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 579
NspI RCATGY 1 cut(s) 577
OliI CACNNNNGTG 1 cut(s) 454
PaeR7I CTCGAG 2 cut(s) 171, 1063
PagI TCATGA 1 cut(s) 819
PcsI WCGNNNNNNNCGW 1 cut(s) 987
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 2 cut(s) 247, 635
PfeI GAWTC 1 cut(s) 445
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 2 cut(s) 18, 309
PleI GAGTC 4 cut(s) 307, 403, 956, 1085
PmaCI CACGTG 1 cut(s) 452
PmlI CACGTG 1 cut(s) 452
PpsI GAGTC 4 cut(s) 307, 403, 956, 1085
Ppu21I YACGTR 1 cut(s) 452
PshAI GACNNNNGTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 394, 864
PspCI CACGTG 1 cut(s) 452
PspEI GGTNACC 2 cut(s) 78, 868
PspGI CCWGG 2 cut(s) 394, 864
PspN4I GGNNCC 2 cut(s) 393, 422
PspXI VCTCGAGB 1 cut(s) 1063
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PstI CTGCAG 1 cut(s) 656
PsuI RGATCY 1 cut(s) 420
RruI TCGCGA 1 cut(s) 53
RsaI GTAC 2 cut(s) 393, 603
RsaNI GTAC 2 cut(s) 392, 602
RseI CAYNNNNRTG 1 cut(s) 454
SaqAI TTAA 2 cut(s) 720, 812
SatI GCNGC 2 cut(s) 17, 308
Sau3AI GATC 3 cut(s) 163, 331, 420
SchI GAGTC 4 cut(s) 308, 403, 957, 1086
ScrFI CCNGG 2 cut(s) 396, 866
SduI GDGCHC 2 cut(s) 798, 941
SexAI ACCWGGT 1 cut(s) 864
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 2 cut(s) 364, 652
Sfr274I CTCGAG 2 cut(s) 171, 1063
SgrAI CRCCGGYG 1 cut(s) 28
SlaI CTCGAG 2 cut(s) 171, 1063
SmiMI CAYNNNNRTG 1 cut(s) 454
SmlI CTYRAG 2 cut(s) 171, 1063
SmoI CTYRAG 2 cut(s) 171, 1063
Sse9I AATT 1 cut(s) 357
SsiI CCGC 4 cut(s) 16, 308, 351, 848
SspMI CTAG 1 cut(s) 902
StyD4I CCNGG 2 cut(s) 394, 864
TaaI ACNGT 3 cut(s) 84, 740, 1033
TaiI ACGT 1 cut(s) 454
TaqI TCGA 6 cut(s) 95, 140, 172, 489, 990, 1064
TasI AATT 1 cut(s) 357
TatI WGTACW 1 cut(s) 601
TauI GCSGC 2 cut(s) 19, 310
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 2 cut(s) 720, 812
Tru9I TTAA 2 cut(s) 720, 812
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 1 cut(s) 868
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 7 cut(s) 496, 623, 688, 740, 808, 836, 1014
TspGWI ACGGA 3 cut(s) 139, 635, 746
TspRI CASTG 1 cut(s) 1036
Van91I CCANNNNNTGG 1 cut(s) 401
VneI GTGCAC 1 cut(s) 937
XceI RCATGY 1 cut(s) 577
XhoI CTCGAG 2 cut(s) 171, 1063
XmiI GTMKAC 1 cut(s) 735
XmnI GAANNNNTTC 2 cut(s) 247, 635
XspI CTAG 1 cut(s) 902
Zsp2I ATGCAT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.