Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007234

Physical Location & Seq

Genomic Coordinates Forward (+)

45050917 .. 45054085

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG208500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAGTGGGCAGGTTACCGCTCTCAGCATCACAGAGAGGCAAGCTCATATCAGCGGGATACACTACTCTAGCTTCGCTCTCATCCATCTCTCCCTCCGACCTCGCTCGAGATTTACAAGTTCCAGAGAGTGAAGCTTTCGAAATGCTCAAGGTTGCAAAACTTGGTTGTGGGTTGGAACAGCCACATAAACATACGGCTATTGTCAATGGTGCACAAACTGCTTGGGATATCCTCAATGAGGAGAGGTTGTTACCACGCATTACTACATCTTGTGCCGATCTAGACAAAATTCTCGGTGGGGGAATTAATTGTAAAGAAGTTACTGAAATTGGTGGAGTTCCTGGCATTGGTAAAACACAGCTTGGGATTCAACTTGCAGTGAATGTGCAAATTCCTGTTGATTGTGGTGGCCTAGGTGGAAAAGCAGTATATATTGATACTGAGGGCAGCTTTATGGTGGAGCGGGCTCTTCAAATTGCTGAAGCTTCTGTAGTAAACTGGTCATCTTATAGTGAACTTTTGCGGAAGGAATCCCAAGCTTGCCGAGTTGAAATACAGCCTACTGATATCCTGGAAAAGATATATTATTTTCGCATTTGCACTTCCACAGAGCAAATTGCCCTGATAAATTACTTAGACCAATTCATCTCGGAGCATAAAGATGTTAAGATTGTTATCATTGATAGTGTTACTTTTCACTTCCGCCAAGATTTTGAGGACTTTGCTCTCAGGAATCGATTACTTGGTGGAATGGCCTTAAAGTTGATGAACCTTGGAAAAAAGTACAATCTGGCGGTTGTCATATTCAATCAAGTAACCACCAAGTGTACAGAAGGTTCATTCCAATTGAGTCTAGCATTGGGTGATAGCTGGTCACATTGTTGTACAAATCGAGTCATATTGTATTGGAATGGTGATGAACGGAATGCATACATAGACAAGTCACCTTCTTTACGATCCGCATCAGCCTCATTTTCTGTGACCAGTGGAGGGATTAGGAATTCTGCTTCAAAACACAAACGAATCAGAGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Rad51

Protein Analysis

346

Amino Acids

38.03

Weight (kDa)

6.99

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	87 - 164	2.5e-20	Rad51
DnaB_C	PF03796	88 - 277	6.4e-07	DnaB-like helicase C terminal domain
ATPase	PF06745	90 - 274	1.1e-08	KaiC
Rad51	PF08423	180 - 335	4.6e-17	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45280 AT2G45280
fragaria_vesca	FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500
malus_domestica	MD02G1207000.v1.1 MD02G1207100.v1.1 MD07G1119400.v1.1
prunus_persica	Prupe.2G143400_v2.0.a1
pyrus_communis	pycom07g10520
rosa_chinensis	RchiOBHm_Chr1g0349891 RchiOBHm_Chr1g0349941
rosa_laevigata	RLG00000028514
rosa_roxburghii	Rroxscaffold_4G00305260
rosa_rugosa	Rorug01G0207000 Rorug01G0207100 Rorug01G0207200
rosa_samantha	Rh1AG223700 Rh1BG191000 Rh1CG208500 Rh1DG219600
rosa_wichuraiana	Rw0G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3
AccBSI	CCGCTC	2 cut(s)	22, 466
AciI	CCGC	7 cut(s)	20, 56, 466, 526, 706, 797, 963
AclWI	GGATC	1 cut(s)	954
AcsI	RAATTY	3 cut(s)	291, 393, 1003
AcuI	CTGAAG	1 cut(s)	504
AdeI	CACNNNGTG	1 cut(s)	828
AfaI	GTAC	3 cut(s)	788, 832, 889
AfiI	CCNNNNNNNGG	3 cut(s)	241, 350, 993
AgsI	TTSAA	5 cut(s)	374, 476, 554, 811, 1014
AjnI	CCWGG	2 cut(s)	343, 573
AluBI	AGCT	8 cut(s)	46, 74, 137, 364, 453, 488, 542, 873
AluI	AGCT	8 cut(s)	46, 74, 137, 364, 453, 488, 542, 873
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	954
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	412, 756
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	3 cut(s)	291, 393, 1003
AseI	ATTAAT	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	415
AsuHPI	GGTGA	3 cut(s)	878, 929, 939
AsuII	TTCGAA	1 cut(s)	141
AvaI	CYCGRG	1 cut(s)	108
AvrII	CCTAGG	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	2 cut(s)	345, 575
BciVI	GTATCC	1 cut(s)	53
BfaI	CTAG	4 cut(s)	71, 284, 416, 857
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	3
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	451
BlnI	CCTAGG	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	345, 575
BmeT110I	CYCGRG	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	345, 575
BmsI	GCATC	2 cut(s)	38, 974
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	739
BsaBI	GATNNNNATC	2 cut(s)	677, 964
BsaJI	CCNNGG	2 cut(s)	415, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 350, 993
Bse1I	ACTGG	2 cut(s)	506, 987
Bse8I	GATNNNNATC	2 cut(s)	677, 964
BseBI	CCWGG	2 cut(s)	345, 575
BseCI	ATCGAT	1 cut(s)	739
BseDI	CCNNGG	2 cut(s)	415, 775
BseGI	GGATG	1 cut(s)	83
BseJI	GATNNNNATC	2 cut(s)	677, 964
BseLI	CCNNNNNNNGG	3 cut(s)	241, 350, 993
BseMII	CTCAG	3 cut(s)	39, 435, 745
BseNI	ACTGG	2 cut(s)	506, 987
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	462
BshFI	GGCC	2 cut(s)	414, 758
BshVI	ATCGAT	1 cut(s)	739
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	108
BslI	CCNNNNNNNGG	3 cut(s)	241, 350, 993
BsmI	GAATGC	1 cut(s)	934
BsnI	GGCC	2 cut(s)	414, 758
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	217, 472
Bsp1407I	TGTACA	2 cut(s)	830, 887
Bsp143I	GATC	2 cut(s)	280, 959
BspACI	CCGC	7 cut(s)	20, 56, 466, 526, 706, 797, 963
BspANI	GGCC	2 cut(s)	414, 758
BspCNI	CTCAG	3 cut(s)	38, 436, 744
BspDI	ATCGAT	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	3
BspPI	GGATC	1 cut(s)	954
BspQI	GCTCTTC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	141
BsrBI	CCGCTC	2 cut(s)	22, 466
BsrGI	TGTACA	2 cut(s)	830, 887
BsrI	ACTGG	2 cut(s)	506, 987
BssECI	CCNNGG	2 cut(s)	415, 775
BssMI	GATC	2 cut(s)	280, 959
BssT1I	CCWWGG	2 cut(s)	415, 775
Bst2UI	CCWGG	2 cut(s)	345, 575
Bst6I	CTCTTC	1 cut(s)	477
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstAUI	TGTACA	2 cut(s)	830, 887
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	44, 468, 544
BstDEI	CTNAG	4 cut(s)	25, 444, 637, 731
BstEII	GGTNACC	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	283, 962
BstMBI	GATC	2 cut(s)	280, 959
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	2 cut(s)	345, 575
BstPI	GGTNACC	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	343, 573
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	462
Bsu15I	ATCGAT	1 cut(s)	739
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	414, 758
BsuTUI	ATCGAT	1 cut(s)	739
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	387, 994
BveI	ACCTGC	1 cut(s)	3
Cac8I	GCNNGC	3 cut(s)	44, 468, 544
ClaI	ATCGAT	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	787, 831, 888
CviQI	GTAC	3 cut(s)	787, 831, 888
DdeI	CTNAG	4 cut(s)	25, 444, 637, 731
DpnI	GATC	2 cut(s)	282, 961
DpnII	GATC	2 cut(s)	280, 959
DraIII	CACNNNGTG	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	2 cut(s)	415, 775
Eco24I	GRGCYC	1 cut(s)	472
Eco32I	GATATC	2 cut(s)	232, 571
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	1003
EcoRII	CCWGG	2 cut(s)	343, 573
EcoRV	GATATC	2 cut(s)	232, 571
EcoT14I	CCWWGG	2 cut(s)	415, 775
EcoT22I	ATGCAT	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	2 cut(s)	415, 775
FauI	CCCGC	2 cut(s)	49, 459
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	4 cut(s)	71, 284, 416, 857
GluI	GCNGC	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	414, 758
HindIII	AAGCTT	3 cut(s)	135, 486, 540
HinfI	GANTC	6 cut(s)	370, 533, 736, 853, 897, 1026
HphI	GGTGA	3 cut(s)	878, 929, 939
Hpy166II	GTNNAC	4 cut(s)	215, 499, 518, 831
Hpy188I	TCNGA	3 cut(s)	100, 655, 1031
Hpy188III	TCNNGA	4 cut(s)	110, 125, 284, 733
Hpy8I	GTNNAC	4 cut(s)	215, 499, 518, 831
HpyAV	CCTTC	3 cut(s)	523, 830, 960
HpyCH4V	TGCA	6 cut(s)	158, 215, 380, 391, 603, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	25, 444, 637, 731
Kzo9I	GATC	2 cut(s)	280, 959
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	2 cut(s)	463, 655
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	2 cut(s)	38, 974
MaeI	CTAG	4 cut(s)	71, 284, 416, 857
MaeIII	GTNAC	8 cut(s)	15, 252, 322, 691, 817, 876, 945, 982
MalI	GATC	2 cut(s)	282, 961
MbiI	CCGCTC	2 cut(s)	22, 466
MboI	GATC	2 cut(s)	280, 959
MboII	GAAGA	1 cut(s)	464
MfeI	CAATTG	1 cut(s)	848
MhlI	GDGCHC	2 cut(s)	217, 472
MlyI	GAGTC	2 cut(s)	862, 906
MmeI	TCCRAC	2 cut(s)	123, 156
Mph1103I	ATGCAT	1 cut(s)	934
MseI	TTAA	3 cut(s)	309, 669, 761
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	345, 575
MunI	CAATTG	1 cut(s)	848
Mva1269I	GAATGC	1 cut(s)	934
MvaI	CCWGG	2 cut(s)	345, 575
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	2 cut(s)	280, 959
NmeAIII	GCCGAG	1 cut(s)	572
NmuCI	GTSAC	3 cut(s)	876, 945, 982
NsiI	ATGCAT	1 cut(s)	934
NspV	TTCGAA	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	477
PctI	GAATGC	1 cut(s)	934
PfeI	GAWTC	4 cut(s)	370, 533, 736, 1026
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	2 cut(s)	861, 905
PpsI	GAGTC	2 cut(s)	861, 905
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	343, 573
PspEI	GGTNACC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	343, 573
PsrI	GAACNNNNNNTAC	2 cut(s)	823, 855
RsaI	GTAC	3 cut(s)	788, 832, 889
RsaNI	GTAC	3 cut(s)	787, 831, 888
RseI	CAYNNNNRTG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	3 cut(s)	309, 669, 761
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	2 cut(s)	280, 959
SchI	GAGTC	2 cut(s)	862, 906
ScrFI	CCNGG	2 cut(s)	345, 575
SduI	GDGCHC	2 cut(s)	217, 472
SfaNI	GCATC	2 cut(s)	38, 974
SfcI	CTRYAG	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	108, 149
SmoI	CTYRAG	2 cut(s)	108, 149
SsiI	CCGC	7 cut(s)	20, 56, 466, 526, 706, 797, 963
SspMI	CTAG	4 cut(s)	71, 284, 416, 857
StyD4I	CCNGG	2 cut(s)	343, 573
StyI	CCWWGG	2 cut(s)	415, 775
TaqI	TCGA	4 cut(s)	109, 141, 739, 895
TatI	WGTACW	3 cut(s)	786, 830, 887
TfiI	GAWTC	4 cut(s)	370, 533, 736, 1026
Tru1I	TTAA	3 cut(s)	309, 669, 761
Tru9I	TTAA	3 cut(s)	309, 669, 761
TscAI	CASTG	2 cut(s)	387, 994
TseFI	GTSAC	3 cut(s)	876, 945, 982
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	3 cut(s)	876, 945, 982
TspDTI	ATGAA	4 cut(s)	637, 785, 831, 936
TspGWI	ACGGA	1 cut(s)	940
TspRI	CASTG	2 cut(s)	387, 994
VneI	GTGCAC	1 cut(s)	213
VspI	ATTAAT	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	3 cut(s)	291, 393, 1003
XbaI	TCTAGA	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	108
XmaJI	CCTAGG	1 cut(s)	415
XspI	CTAG	4 cut(s)	71, 284, 416, 857
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.