Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007234

Physical Location & Seq

Genomic Coordinates Forward (+)

42971672 .. 42973282

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAGTGGCCAGGTTACCGCTCTCAGCATCACACAGAGGCAAGCTCATATCAGCGGGCTATACTACTCTAGCTTCGCTCTCATCCATCTCTCCCTCCGACCTCGCTCGAGATTTAAAAGTTCCAGAGAGTGAAGCTTTCGAAATGCTCAAGGTTGCAAAACTTGGTTGTGGGTTGGAACAGCCAGATAAACATACGGCCATTGTCAATGGTGCACAAACTGCTTGGGATATCCTCAATGAGGAGAAGTTGTTAACGCGCATTACTACATCTTGTGCCGATCTAGACAAAATTCTCGGTGGGGGAATTAATTGTAAAGAAGTTACTGAAATTGGTGGAGTTCCAGGCATTGGTAAAACACAGCTTGGGTATGGGTGTTTTTTTTTTTCCCAATCTATGTGTATACTCCTTTTATTGTTCTCCAGGGCATTGAATGCATACTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Rad51

Protein Analysis

149

Amino Acids

15.96

Weight (kDa)

6.1

Isoelectric Point (pI)

28.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	85 - 125	8.8e-06	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45280 AT2G45280
fragaria_vesca	FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500
malus_domestica	MD02G1207000.v1.1 MD02G1207100.v1.1 MD07G1119400.v1.1
prunus_persica	Prupe.2G143400_v2.0.a1
pyrus_communis	pycom07g10520
rosa_chinensis	RchiOBHm_Chr1g0349891 RchiOBHm_Chr1g0349941
rosa_laevigata	RLG00000028514
rosa_roxburghii	Rroxscaffold_4G00305260
rosa_rugosa	Rorug01G0207000 Rorug01G0207100 Rorug01G0207200
rosa_samantha	Rh1AG223700 Rh1BG191000 Rh1CG208500 Rh1DG219600
rosa_wichuraiana	Rw0G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	403
AccII	CGCG	1 cut(s)	259
AciI	CCGC	2 cut(s)	20, 56
AcoI	YGGCCR	2 cut(s)	9, 198
AcsI	RAATTY	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	241, 350
AgsI	TTSAA	1 cut(s)	433
AjnI	CCWGG	3 cut(s)	11, 343, 422
AluBI	AGCT	4 cut(s)	46, 74, 137, 364
AluI	AGCT	4 cut(s)	46, 74, 137, 364
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	2 cut(s)	9, 198
ApaLI	GTGCAC	1 cut(s)	213
ApoI	RAATTY	1 cut(s)	291
AseI	ATTAAT	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	261
AsuII	TTCGAA	1 cut(s)	141
AvaI	CYCGRG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	213
BciT130I	CCWGG	3 cut(s)	13, 345, 424
BfaI	CTAG	2 cut(s)	71, 284
Bme1390I	CCNGG	3 cut(s)	13, 345, 424
BmeT110I	CYCGRG	1 cut(s)	108
BmrFI	CCNGG	3 cut(s)	13, 345, 424
BmsI	GCATC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpmI	CTGGAG	1 cut(s)	406
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 350
BseBI	CCWGG	3 cut(s)	13, 345, 424
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	241, 350
BseMII	CTCAG	1 cut(s)	39
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	259
BshFI	GGCC	2 cut(s)	11, 200
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	108
BslI	CCNNNNNNNGG	2 cut(s)	241, 350
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	11, 200
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	2 cut(s)	20, 56
BspANI	GGCC	2 cut(s)	11, 200
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	1 cut(s)	280
BssNAI	GTATAC	1 cut(s)	404
Bst1107I	GTATAC	1 cut(s)	404
Bst2UI	CCWGG	3 cut(s)	13, 345, 424
BstAPI	GCANNNNNTGC	2 cut(s)	221, 434
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	44, 58
BstDEI	CTNAG	1 cut(s)	25
BstEII	GGTNACC	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 434
BstNI	CCWGG	3 cut(s)	13, 345, 424
BstPI	GGTNACC	1 cut(s)	15
BstSCI	CCNGG	3 cut(s)	11, 343, 422
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	1 cut(s)	259
BstZ17I	GTATAC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	11, 200
BtsCI	GGATG	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	44, 58
CfoI	GCGC	1 cut(s)	261
CviJI	RGCY	8 cut(s)	11, 46, 60, 74, 137, 184, 200, 364
CviKI_1	RGCY	8 cut(s)	11, 46, 60, 74, 137, 184, 200, 364
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraI	TTTAAA	1 cut(s)	117
EaeI	YGGCCR	2 cut(s)	9, 198
Eco32I	GATATC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	11, 343, 422
EcoRV	GATATC	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	439
FaiI	YATR	7 cut(s)	50, 63, 195, 372, 398, 404, 439
FauI	CCCGC	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	403
FokI	GGATG	1 cut(s)	70
FspBI	CTAG	2 cut(s)	71, 284
GlaI	GCGC	1 cut(s)	260
GsuI	CTGGAG	1 cut(s)	406
HaeIII	GGCC	2 cut(s)	11, 200
HhaI	GCGC	1 cut(s)	261
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	135
HpaI	GTTAAC	1 cut(s)	255
Hpy166II	GTNNAC	3 cut(s)	215, 255, 404
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	3 cut(s)	110, 125, 284
Hpy8I	GTNNAC	3 cut(s)	215, 255, 404
HpyCH4V	TGCA	3 cut(s)	158, 215, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 434
HpyF3I	CTNAG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	7 cut(s)	25, 138, 198, 330, 357, 409, 436
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	71, 284
MaeIII	GTNAC	2 cut(s)	15, 322
MalI	GATC	1 cut(s)	282
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	4 cut(s)	291, 306, 310, 330
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	2 cut(s)	123, 156
MnlI	CCTC	5 cut(s)	32, 106, 113, 235, 245
Mox20I	TGGCCA	1 cut(s)	11
Mph1103I	ATGCAT	1 cut(s)	439
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	3 cut(s)	116, 254, 309
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	3 cut(s)	13, 345, 424
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	3 cut(s)	13, 345, 424
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	221, 434
NdeII	GATC	1 cut(s)	280
NsiI	ATGCAT	1 cut(s)	439
NspV	TTCGAA	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	108
PctI	GAATGC	1 cut(s)	439
PflMI	CCANNNNNTGG	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	3 cut(s)	11, 343, 422
PspEI	GGTNACC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	11, 343, 422
SaqAI	TTAA	3 cut(s)	116, 254, 309
Sau3AI	GATC	1 cut(s)	280
ScrFI	CCNGG	3 cut(s)	13, 345, 424
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	7 cut(s)	17, 48, 76, 105, 139, 156, 366
SfaNI	GCATC	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	108
SmlI	CTYRAG	2 cut(s)	108, 149
SmoI	CTYRAG	2 cut(s)	108, 149
Sse9I	AATT	4 cut(s)	291, 306, 310, 330
SsiI	CCGC	2 cut(s)	20, 56
SspMI	CTAG	2 cut(s)	71, 284
StyD4I	CCNGG	3 cut(s)	11, 343, 422
TaqI	TCGA	2 cut(s)	109, 141
TasI	AATT	4 cut(s)	291, 306, 310, 330
Tru1I	TTAA	3 cut(s)	116, 254, 309
Tru9I	TTAA	3 cut(s)	116, 254, 309
Van91I	CCANNNNNTGG	1 cut(s)	350
VneI	GTGCAC	1 cut(s)	213
VspI	ATTAAT	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	291
XbaI	TCTAGA	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	403
XspI	CTAG	2 cut(s)	71, 284
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.