Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007234

Physical Location & Seq

Genomic Coordinates Reverse (-)

29180847 .. 29184379

Gene Structure 3533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0207100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAGACTCATACTCTGTTTGTAGTCCCAGAAGAATTCTGAGTGTGTCAAAGAAGAGGAGGGAGGCAACAGTGTCCTTTGCAGATGCTGATATTAAGGCTTCTGGGTTTCATGGTCCCAAACCTGCTGAAGTGTATGGCTTTGTGGGTTCTATCACAACTGTTGTGGCAACAGTTATTCTCTTGGTGTGGGCATATGTGCCAGAGTCTTGGCTACATTGGATTGGCATCTTTTACTACCCCAGCAGGTATTGGGCATTGGCTGTGCCAGCTTATGCAATGATGACTGTAGTACTGGCATTAGTATTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCGCCATCCTCCTTATATACAGTATATGATGAATTTAGTAGAGATCCTGTAAGCTCTGGTCAAATGGCTGGTGATGATCAACTCATTGAACCCATATCTGATATCAGTATTGACAAAATCAATCGTTCCATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Rad51

Protein Analysis

159

Amino Acids

17.77

Weight (kDa)

5.61

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-P	PF08510	43 - 158	5.5e-38	PIG-P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45280 AT2G45280
fragaria_vesca	FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500
malus_domestica	MD02G1207000.v1.1 MD02G1207100.v1.1 MD07G1119400.v1.1
prunus_persica	Prupe.2G143400_v2.0.a1
pyrus_communis	pycom07g10520
rosa_chinensis	RchiOBHm_Chr1g0349891 RchiOBHm_Chr1g0349941
rosa_laevigata	RLG00000028514
rosa_roxburghii	Rroxscaffold_4G00305260
rosa_rugosa	Rorug01G0207000 Rorug01G0207100 Rorug01G0207200
rosa_samantha	Rh1AG223700 Rh1BG191000 Rh1CG208500 Rh1DG219600
rosa_wichuraiana	Rw0G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	133, 237
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	36, 371
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	428
AluBI	AGCT	2 cut(s)	272, 393
AluI	AGCT	2 cut(s)	272, 393
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	36, 371
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	415
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	2 cut(s)	133, 237
BmcAI	AGTACT	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	2 cut(s)	76, 237
BpiI	GAAGAC	1 cut(s)	12
BsaBI	GATNNNNATC	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	227
BseGI	GGATG	1 cut(s)	344
BseJI	GATNNNNATC	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	12, 102
BsmFI	GGGAC	2 cut(s)	12, 102
BsnI	GGCC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	382, 415
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	2 cut(s)	133, 237
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	382, 415
Bst4CI	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	344
BstKTI	GATC	2 cut(s)	385, 418
BstMBI	GATC	2 cut(s)	382, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	2 cut(s)	133, 237
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	293
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	3 cut(s)	113, 328, 469
CviJI	RGCY	8 cut(s)	101, 141, 214, 263, 272, 318, 393, 407
CviKI_1	RGCY	8 cut(s)	101, 141, 214, 263, 272, 318, 393, 407
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	384, 417
DpnII	GATC	2 cut(s)	382, 415
DraI	TTTAAA	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	3 cut(s)	116, 331, 472
FaqI	GGGAC	2 cut(s)	12, 102
FatI	CATG	3 cut(s)	112, 327, 468
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	415
FokI	GGATG	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	116, 331, 472
HinfI	GANTC	2 cut(s)	8, 206
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	42, 439
Hpy8I	GTNNAC	1 cut(s)	333
HpyCH4III	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
HpyCH4V	TGCA	2 cut(s)	83, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	116, 331, 472
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	382, 415
LweI	GCATC	2 cut(s)	76, 237
MalI	GATC	2 cut(s)	384, 417
MboI	GATC	2 cut(s)	382, 415
MboII	GAAGA	3 cut(s)	17, 45, 67
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	2 cut(s)	36, 371
MlyI	GAGTC	2 cut(s)	2, 215
MnlI	CCTC	6 cut(s)	51, 54, 58, 329, 348, 358
MseI	TTAA	2 cut(s)	96, 474
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	382, 415
NlaIII	CATG	3 cut(s)	116, 331, 472
NlaIV	GGNNCC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	2, 214
PpsI	GAGTC	2 cut(s)	2, 214
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	96, 474
Sau3AI	GATC	2 cut(s)	382, 415
Sau96I	GGNCC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	294
SchI	GAGTC	2 cut(s)	2, 215
SetI	ASST	4 cut(s)	127, 251, 274, 395
SfaNI	GCATC	2 cut(s)	76, 237
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	2 cut(s)	36, 371
SsiI	CCGC	1 cut(s)	341
TaaI	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
TasI	AATT	2 cut(s)	36, 371
TatI	WGTACW	1 cut(s)	292
Tru1I	TTAA	2 cut(s)	96, 474
Tru9I	TTAA	2 cut(s)	96, 474
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	3 cut(s)	101, 316, 384
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	2 cut(s)	36, 371
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.