Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007234

Physical Location & Seq

Genomic Coordinates Forward (+)

20882381 .. 20885582

Gene Structure 3202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1207000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCGTAGAAATGGAAGTGGGAAGGTTACCAATCTCAGCATCACAGAGAGTAAACTGATATCAGCAGGTTACACCACTCTCGTTGCCCTCTCTTCTCTCTCCCCCTCCGACCTTGCTAGAGAACTGAAAATTCCAGAGAGTGAAGCTCTTGAAATCCTGAAGGTTGCCTCACTCGATCGTGGGTTGGACCAACCAGATAAAAACAATGCTATTGTCAACGGTGAACAAAATGCTTGGGAAATGCTCCATGAAGAGCTGTCATTTCCACACATCACTACATCTTCTGATGATCTAGATAACATCCTCGGTGGGGGAATTAATTACAAAGAAGTTACTGAAGTGGGCTACCTGGGAATCGGTAAAACACAGATGGGGATTCAACTTGCCGTGAATGTGCAAATTCCAGTTGATTTGGGTGGCCTAGGTGGAAAGGCAGTATATGTCGATACAGAAGGCAGCTTTATGGTGGAATGGGCTCTACAAATTGCTGAAGCTTCCGTAGTGGAAATGTCAAATTATAATGAGCTTTTGAAGAAAAATCGAGATTGCCAAGTTGAAATTCAGCCCACTGATATCTTGGACAACATATTTTATTTCCGTGTCTGCACTTATACAGAGCAAATTGCCCTGATAAATTACTTAGACAAATTCATCTTGGAGCATAAGGATGTTAAGATTGTGATTGTTGATAGTGTTACCCTTCACTTCCGCCAAGATTTTGAGGAGGTTTGGACATGTGCAAAGAAGGCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Rad51

Protein Analysis

252

Amino Acids

27.95

Weight (kDa)

4.66

Isoelectric Point (pI)

31.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	90 - 241	7.9e-24	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45280 AT2G45280
fragaria_vesca	FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500
malus_domestica	MD02G1207000.v1.1 MD02G1207100.v1.1 MD07G1119400.v1.1
prunus_persica	Prupe.2G143400_v2.0.a1
pyrus_communis	pycom07g10520
rosa_chinensis	RchiOBHm_Chr1g0349891 RchiOBHm_Chr1g0349941
rosa_laevigata	RLG00000028514
rosa_roxburghii	Rroxscaffold_4G00305260
rosa_rugosa	Rorug01G0207000 Rorug01G0207100 Rorug01G0207200
rosa_samantha	Rh1AG223700 Rh1BG191000 Rh1CG208500 Rh1DG219600
rosa_wichuraiana	Rw0G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
Acc36I	ACCTGC	1 cut(s)	56
AciI	CCGC	1 cut(s)	709
AcsI	RAATTY	4 cut(s)	129, 399, 558, 647
AcuI	CTGAAG	3 cut(s)	179, 357, 510
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	734
AgsI	TTSAA	4 cut(s)	152, 380, 532, 557
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	146, 256, 459, 494, 526
AluI	AGCT	5 cut(s)	146, 256, 459, 494, 526
AoxI	GGCC	2 cut(s)	418, 747
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	4 cut(s)	129, 399, 558, 647
AseI	ATTAAT	1 cut(s)	318
AspA2I	CCTAGG	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	187
AvrII	CCTAGG	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	468
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	350
BfaI	CTAG	3 cut(s)	117, 293, 422
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	457
BlnI	CCTAGG	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	458
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
BsaJI	CCNNGG	3 cut(s)	304, 349, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	304, 349, 421
BseGI	GGATG	2 cut(s)	300, 673
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	589
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	420, 749
BsiEI	CGRYCG	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	2 cut(s)	420, 749
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	2 cut(s)	175, 289
BspACI	CCGC	1 cut(s)	709
BspANI	GGCC	2 cut(s)	420, 749
BspCNI	CTCAG	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	56
BspQI	GCTCTTC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	3 cut(s)	304, 349, 421
BssMI	GATC	2 cut(s)	175, 289
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	2 cut(s)	97, 246
BstDEI	CTNAG	2 cut(s)	35, 640
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	300, 673
BstKTI	GATC	2 cut(s)	178, 292
BstMBI	GATC	2 cut(s)	175, 289
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	746
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	738
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	420, 749
BtsCI	GGATG	2 cut(s)	300, 673
BtsIMutI	CAGTG	1 cut(s)	567
BveI	ACCTGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	2 cut(s)	248, 735
DdeI	CTNAG	2 cut(s)	35, 640
DpnI	GATC	2 cut(s)	177, 291
DpnII	GATC	2 cut(s)	175, 289
Eam1104I	CTCTTC	2 cut(s)	97, 246
EarI	CTCTTC	2 cut(s)	97, 246
EciI	GGCGGA	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	421
Eco147I	AGGCCT	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	478
Eco32I	GATATC	2 cut(s)	60, 574
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	3 cut(s)	179, 357, 510
Eco91I	GGTNACC	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	348
EcoRV	GATATC	2 cut(s)	60, 574
EcoT14I	CCWWGG	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	2 cut(s)	251, 738
FaiI	YATR	9 cut(s)	249, 439, 441, 464, 519, 587, 612, 663, 736
FatI	CATG	2 cut(s)	247, 734
Fnu4HI	GCNGC	1 cut(s)	457
FokI	GGATG	2 cut(s)	287, 680
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	1 cut(s)	457
FspBI	CTAG	3 cut(s)	117, 293, 422
GluI	GCNGC	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	420, 749
Hin1II	CATG	2 cut(s)	251, 738
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	2 cut(s)	354, 376
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	3 cut(s)	53, 217, 224
Hpy188I	TCNGA	2 cut(s)	109, 286
Hpy188III	TCNNGA	5 cut(s)	134, 149, 157, 293, 542
Hpy8I	GTNNAC	3 cut(s)	53, 217, 224
HpyAV	CCTTC	5 cut(s)	16, 154, 446, 710, 739
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	397, 606, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	746
HpyF3I	CTNAG	2 cut(s)	35, 640
Hsp92II	CATG	2 cut(s)	251, 738
Kzo9I	GATC	2 cut(s)	175, 289
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	249, 658
LpnPI	CCDG	8 cut(s)	51, 147, 170, 207, 335, 362, 417, 641
Lsp1109I	GCAGC	1 cut(s)	468
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	117, 293, 422
MaeIII	GTNAC	4 cut(s)	25, 68, 331, 694
MalI	GATC	2 cut(s)	177, 291
MboI	GATC	2 cut(s)	175, 289
MboII	GAAGA	4 cut(s)	84, 263, 273, 544
MhlI	GDGCHC	1 cut(s)	478
MmeI	TCCRAC	2 cut(s)	132, 165
MnlI	CCTC	6 cut(s)	98, 115, 178, 314, 715, 718
MseI	TTAA	2 cut(s)	318, 672
MslI	CAYNNNNRTG	1 cut(s)	666
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	746
NdeII	GATC	2 cut(s)	175, 289
NlaIII	CATG	2 cut(s)	251, 738
NspI	RCATGY	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	749
PciI	ACATGT	1 cut(s)	734
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	354, 376
PkrI	GCNGC	1 cut(s)	458
Ple19I	CGATCG	1 cut(s)	178
PscI	ACATGT	1 cut(s)	734
PshBI	ATTAAT	1 cut(s)	318
PsiI	TTATAA	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	348
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	666
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	318, 672
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	2 cut(s)	175, 289
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	666
SseBI	AGGCCT	1 cut(s)	749
SsiI	CCGC	1 cut(s)	709
SspMI	CTAG	3 cut(s)	117, 293, 422
StuI	AGGCCT	1 cut(s)	749
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	221
TaqI	TCGA	3 cut(s)	174, 444, 541
TfiI	GAWTC	2 cut(s)	354, 376
Tru1I	TTAA	2 cut(s)	318, 672
Tru9I	TTAA	2 cut(s)	318, 672
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	1 cut(s)	456
TspDTI	ATGAA	2 cut(s)	264, 640
TspGWI	ACGGA	2 cut(s)	487, 587
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	4 cut(s)	129, 399, 558, 647
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	738
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmaJI	CCTAGG	1 cut(s)	421
XspI	CTAG	3 cut(s)	117, 293, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.