Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007234

Physical Location & Seq

Genomic Coordinates Forward (+)

20890079 .. 20891325

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1207100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCCTTAAAGTTGATGAACCTTGCAAAGAAATATAATATGGCGGTTGTCATATTCAATCAAGCGACCACTAAGCATGTAGAAGGTTCATTCCATTTAAGTCTTGCACTAGGTGATAGCTGGTCACATTGTTGCACCAATCGAGTCATATTGCATTGGAATGGTGATGAACGAAATGCGTACCTAGACAAGTCACCTTCTCTCCGATCAGCATCAGCTCCATTTTCCGTGACTAGTGAAGGGATCATGAACTCTGCTTCAAACCATAAGCGAATCAAATTGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Rad51

Protein Analysis

96

Amino Acids

10.56

Weight (kDa)

9.56

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	4 - 84	3.5e-06	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45280 AT2G45280
fragaria_vesca	FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500
malus_domestica	MD02G1207000.v1.1 MD02G1207100.v1.1 MD07G1119400.v1.1
prunus_persica	Prupe.2G143400_v2.0.a1
pyrus_communis	pycom07g10520
rosa_chinensis	RchiOBHm_Chr1g0349891 RchiOBHm_Chr1g0349941
rosa_laevigata	RLG00000028514
rosa_roxburghii	Rroxscaffold_4G00305260
rosa_rugosa	Rorug01G0207000 Rorug01G0207100 Rorug01G0207200
rosa_samantha	Rh1AG223700 Rh1BG191000 Rh1CG208500 Rh1DG219600
rosa_wichuraiana	Rw0G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	1 cut(s)	251
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	58, 261
AhlI	ACTAGT	1 cut(s)	233
AjiI	CACGTC	1 cut(s)	285
AluBI	AGCT	2 cut(s)	120, 218
AluI	AGCT	2 cut(s)	120, 218
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	3
AsuHPI	GGTGA	3 cut(s)	125, 176, 186
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	3 cut(s)	110, 185, 234
BmgBI	CACGTC	1 cut(s)	285
BmsI	GCATC	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bse8I	GATNNNNATC	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	206, 243
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	246
BspPI	GGATC	1 cut(s)	251
BssMI	GATC	2 cut(s)	206, 243
BstDEI	CTNAG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	209, 246
BstMBI	GATC	2 cut(s)	206, 243
BstNSI	RCATGY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	77, 247
CviJI	RGCY	3 cut(s)	5, 120, 218
CviKI_1	RGCY	3 cut(s)	5, 120, 218
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	208, 245
DpnII	GATC	2 cut(s)	206, 243
DraIII	CACNNNGTG	1 cut(s)	113
FaeI	CATG	2 cut(s)	80, 250
FaiI	YATR	7 cut(s)	36, 41, 53, 78, 149, 248, 267
FatI	CATG	2 cut(s)	76, 246
FspBI	CTAG	3 cut(s)	110, 185, 234
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	80, 250
HinfI	GANTC	2 cut(s)	144, 273
HphI	GGTGA	3 cut(s)	125, 176, 186
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	77, 207, 233
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	26, 107, 135, 154
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	2 cut(s)	80, 250
Kzo9I	GATC	2 cut(s)	206, 243
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	1 cut(s)	106
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	3 cut(s)	110, 185, 234
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	123, 192, 229
MalI	GATC	2 cut(s)	208, 245
MboI	GATC	2 cut(s)	206, 243
MluCI	AATT	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	153
MseI	TTAA	2 cut(s)	8, 98
MslI	CAYNNNNRTG	1 cut(s)	159
NdeII	GATC	2 cut(s)	206, 243
NlaIII	CATG	2 cut(s)	80, 250
NmuCI	GTSAC	3 cut(s)	123, 192, 229
NspI	RCATGY	1 cut(s)	80
PagI	TCATGA	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	8, 98
Sau3AI	GATC	2 cut(s)	206, 243
SchI	GAGTC	1 cut(s)	153
SetI	ASST	8 cut(s)	24, 88, 115, 122, 186, 199, 220, 287
SfaNI	GCATC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	159
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	110, 185, 234
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	1 cut(s)	142
TasI	AATT	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	8, 98
Tru9I	TTAA	2 cut(s)	8, 98
TseFI	GTSAC	3 cut(s)	123, 192, 229
Tsp45I	GTSAC	3 cut(s)	123, 192, 229
TspDTI	ATGAA	4 cut(s)	32, 78, 183, 263
TspGWI	ACGGA	1 cut(s)	217
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	3 cut(s)	110, 185, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.