Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007234

Physical Location & Seq

Genomic Coordinates Forward (+)

14937071 .. 14942140

Gene Structure 5070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1119400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAGTGGGAAGGTTACCAATCTCAGCATCTCTGAGAGGCAAACTGATATCAGCAGGCTACACCACTTTCGCTTCCCTCTCATCTCTCTCCCCCTCCGACCTTGCTCGAGATCTGAAAATTCCAGAGAGTGAAGCTCTTGAAATCCTGAAGGCTGCATCACTCGATTGTGGGTTGGACAAACCAGATAAAAGTAATGTTATTGTCAATGGTGCACAAACTGCTTGGGAAATGCTCCATGAAGAGCAGTCATTTCCACGCATCATTACTTCTTCTTCTGATCTAGATAACATCCTCGGTGGGGGAATTAATTGCAAAGAAGTTACTGAAATTGGTGGGCTACCGGGAATTGGTAAAACACAGATGGGGATTCAACTTGCTGTGAATGTGCAAATTCCAGTTGATTTGGGTGGCCTAGGTGGAAAGGCAGTATATGTCGATACAGAAGGCAGCTTTATGGTGGAACGGGCGCTACAAATTGCTAAAGCTTCCATTGTGGAAATGTCAAATTATACTGAGCTTTTGAAGAAGAAAAATCGAGTTTGCCAAGTTGATATTCAGCCGACTGATATCTTGGACAACATATTTTATTTCCGCATCTGCACTTATACAGAGCAAATTGCCCTGATAAATTACTTAGACAAATTCATCTTGGAGCATAAAGATGTTAAGATTGTGATTGTTGATAGTGTTACTTTTCACTTCCGCCAAGATTTTGAGGACTTGGCTCTCAGGACTCGGTTACTTGGTGGAATGGCCTTAAAGTTGATGAACCTTGCAAAGAAATATAATCTGGCAGTTGTCATATTCAATCAAGCAACCACAAAGTATGTTGAAGGTTCATTCCAATTAAGTCTTGCACTCGGGGATAGCTGGTCGCATTGTTGCACCAATCGAGTCATATTGCATTGGAATGGTGATGAACGAAATGCATACCTAGACAAGTCACCTTCTCTCCGATCAGCATCAGCTCCATTTTCTGTGACCAGTGAAGGAATTAGGAACTCTGCTTCAAACCATAAGCGGATCAAATTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Rad51

Protein Analysis

347

Amino Acids

38.11

Weight (kDa)

6.33

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	87 - 164	6e-19	Rad51
ATPase	PF06745	93 - 275	2.3e-07	KaiC
Rad51	PF08423	184 - 335	3e-17	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45280 AT2G45280
fragaria_vesca	FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500
malus_domestica	MD02G1207000.v1.1 MD02G1207100.v1.1 MD07G1119400.v1.1
prunus_persica	Prupe.2G143400_v2.0.a1
pyrus_communis	pycom07g10520
rosa_chinensis	RchiOBHm_Chr1g0349891 RchiOBHm_Chr1g0349941
rosa_laevigata	RLG00000028514
rosa_roxburghii	Rroxscaffold_4G00305260
rosa_rugosa	Rorug01G0207000 Rorug01G0207100 Rorug01G0207200
rosa_samantha	Rh1AG223700 Rh1BG191000 Rh1CG208500 Rh1DG219600
rosa_wichuraiana	Rw0G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	595, 706, 1024
AclWI	GGATC	1 cut(s)	1034
AcsI	RAATTY	3 cut(s)	120, 393, 644
AcuI	CTGAAG	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	301, 350
AgsI	TTSAA	6 cut(s)	143, 374, 526, 811, 836, 1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	6 cut(s)	137, 453, 488, 520, 873, 971
AluI	AGCT	6 cut(s)	137, 453, 488, 520, 873, 971
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	1034
Ama87I	CYCGRG	2 cut(s)	108, 863
AoxI	GGCC	2 cut(s)	412, 756
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	155, 450
ApoI	RAATTY	3 cut(s)	120, 393, 644
AseI	ATTAAT	2 cut(s)	309, 1034
AspA2I	CCTAGG	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	472
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	929, 939
AvaI	CYCGRG	2 cut(s)	108, 863
AvrII	CCTAGG	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	142, 462
BccI	CCATC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	345
BfaI	CTAG	3 cut(s)	284, 416, 938
BfoI	RGCGCY	1 cut(s)	473
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	2 cut(s)	156, 451
BlnI	CCTAGG	1 cut(s)	415
BlsI	GCNGC	2 cut(s)	157, 452
Bme1390I	CCNGG	1 cut(s)	345
BmeT110I	CYCGRG	2 cut(s)	108, 863
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	5 cut(s)	38, 167, 270, 606, 974
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpuMI	CCSGG	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	964
BsaJI	CCNNGG	2 cut(s)	295, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 350
Bse1I	ACTGG	2 cut(s)	398, 987
Bse8I	GATNNNNATC	1 cut(s)	964
BseDI	CCNNGG	2 cut(s)	295, 415
BseGI	GGATG	1 cut(s)	291
BseJI	GATNNNNATC	1 cut(s)	964
BseLI	CCNNNNNNNGG	2 cut(s)	301, 350
BseMII	CTCAG	4 cut(s)	26, 39, 507, 745
BseNI	ACTGG	2 cut(s)	398, 987
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	142, 462
BsgI	GTGCAG	1 cut(s)	586
BshFI	GGCC	2 cut(s)	414, 758
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	2 cut(s)	108, 863
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	301, 350
BsnI	GGCC	2 cut(s)	414, 758
BsoBI	CYCGRG	2 cut(s)	108, 863
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	112, 280, 959, 1026
BspACI	CCGC	3 cut(s)	595, 706, 1024
BspANI	GGCC	2 cut(s)	414, 758
BspCNI	CTCAG	4 cut(s)	27, 38, 508, 744
BspPI	GGATC	1 cut(s)	1034
BspQI	GCTCTTC	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	398, 987
BssECI	CCNNGG	2 cut(s)	295, 415
BssMI	GATC	4 cut(s)	112, 280, 959, 1026
BssT1I	CCWWGG	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	5 cut(s)	25, 35, 516, 637, 731
BstEII	GGTNACC	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	4 cut(s)	115, 283, 962, 1029
BstMBI	GATC	4 cut(s)	112, 280, 959, 1026
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstPI	GGTNACC	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	142, 462
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	414, 758
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	994
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	472
CviAII	CATG	1 cut(s)	239
DdeI	CTNAG	5 cut(s)	25, 35, 516, 637, 731
DpnI	GATC	4 cut(s)	114, 282, 961, 1028
DpnII	GATC	4 cut(s)	112, 280, 959, 1026
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	415
Eco32I	GATATC	2 cut(s)	51, 571
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	2 cut(s)	108, 863
Eco91I	GGTNACC	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	15
EcoRV	GATATC	2 cut(s)	51, 571
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	1 cut(s)	242
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	156, 451
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	2 cut(s)	156, 451
FspBI	CTAG	3 cut(s)	284, 416, 938
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	2 cut(s)	156, 451
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	414, 758
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	3 cut(s)	370, 736, 897
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	929, 939
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	5 cut(s)	36, 100, 117, 280, 959
Hpy188III	TCNNGA	6 cut(s)	110, 125, 140, 148, 284, 733
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	6 cut(s)	6, 145, 440, 830, 960, 986
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	5 cut(s)	25, 35, 516, 637, 731
Hsp92II	CATG	1 cut(s)	242
HspAI	GCGC	1 cut(s)	470
Kzo9I	GATC	4 cut(s)	112, 280, 959, 1026
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	3 cut(s)	240, 655, 976
Lsp1109I	GCAGC	2 cut(s)	142, 462
LweI	GCATC	5 cut(s)	38, 167, 270, 606, 974
MaeI	CTAG	3 cut(s)	284, 416, 938
MaeIII	GTNAC	6 cut(s)	15, 322, 691, 741, 945, 982
MalI	GATC	4 cut(s)	114, 282, 961, 1028
MboI	GATC	4 cut(s)	112, 280, 959, 1026
MboII	GAAGA	5 cut(s)	254, 264, 267, 538, 541
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	217
MlyI	GAGTC	2 cut(s)	730, 906
MmeI	TCCRAC	2 cut(s)	123, 156
MnlI	CCTC	5 cut(s)	32, 89, 106, 305, 712
Mph1103I	ATGCAT	1 cut(s)	934
MseI	TTAA	5 cut(s)	309, 669, 761, 851, 1034
MslI	CAYNNNNRTG	2 cut(s)	663, 912
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	4 cut(s)	112, 280, 959, 1026
NlaIII	CATG	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	945, 982
NsiI	ATGCAT	1 cut(s)	934
PaeR7I	CTCGAG	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	157, 452
PleI	GAGTC	2 cut(s)	730, 905
PpsI	GAGTC	2 cut(s)	730, 905
PshBI	ATTAAT	2 cut(s)	309, 1034
PspEI	GGTNACC	1 cut(s)	15
PsrI	GAACNNNNNNTAC	2 cut(s)	456, 488
PsuI	RGATCY	1 cut(s)	112
RseI	CAYNNNNRTG	2 cut(s)	663, 912
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	5 cut(s)	309, 669, 761, 851, 1034
SatI	GCNGC	2 cut(s)	156, 451
Sau3AI	GATC	4 cut(s)	112, 280, 959, 1026
SchI	GAGTC	2 cut(s)	730, 906
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	217
SfaNI	GCATC	5 cut(s)	38, 167, 270, 606, 974
Sfr274I	CTCGAG	1 cut(s)	108
SlaI	CTCGAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	663, 912
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
SsiI	CCGC	3 cut(s)	595, 706, 1024
SspMI	CTAG	3 cut(s)	284, 416, 938
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	415
TaqI	TCGA	5 cut(s)	109, 165, 438, 538, 895
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	5 cut(s)	309, 669, 761, 851, 1034
Tru9I	TTAA	5 cut(s)	309, 669, 761, 851, 1034
TscAI	CASTG	1 cut(s)	994
TseFI	GTSAC	2 cut(s)	945, 982
TseI	GCWGC	2 cut(s)	155, 450
Tsp45I	GTSAC	2 cut(s)	945, 982
TspDTI	ATGAA	5 cut(s)	255, 637, 785, 831, 936
TspRI	CASTG	1 cut(s)	994
VneI	GTGCAC	1 cut(s)	213
VspI	ATTAAT	2 cut(s)	309, 1034
XapI	RAATTY	3 cut(s)	120, 393, 644
XbaI	TCTAGA	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	108
XmaJI	CCTAGG	1 cut(s)	415
XspI	CTAG	3 cut(s)	284, 416, 938
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.