Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007234

Physical Location & Seq

Genomic Coordinates Forward (+)

20072510 .. 20076316

Gene Structure 3807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAAGTGGGAAGGTTACCAATCTCAGCATCACAGAGAGGCAAACTGATATCAGCAGGCTATACCACTCTCGCTTCGCTCTCATCTCTCTCTTCCTCCGACCTTGCTCGAGATCTAAAAATTCCAGAGAGTGAAGCTTTTGAAATCCTGAAGGTTGCATCACACGACTGTAGGTTGGACCAACCAGATAAAAGTAATGGCATTTTCACTGGTGCACAAACTGCTTGGGAAATGCTCCATGAGGAGCAATTATTTCCACGCATCACGACATCTTGTGCTGATCTAGATAACATCCTTGGTGGGGGAATTAATTGCAAAGAAGTTACCGAAATTGGTGGAGTACCGGGCATCGGTAAAACACAGCTGGGCATTCAACTTGCAGTGAACGTGCAAATTCCAGTTGATTTTGGTGGCCTAGGTGGAAAGGCAGTATATATTGATACGGAAGGCAGCTTTATGGTGGAGCGGGCTCTACAAATTGCCGAAGCTTCTGTAGTGGACATGTCACATTACAATGAGCTTCTGTGGAAGGAACTTCGAACTTGCCAAGTTGAAATTCAGCCTACTGATATCTTGAAAAACATTTTTTATTTCCGCATCTGCAGTTATACGGAGCAGATTGCCCTGATAAATCACTTAGACAAATTCATCTTGGAGCATAAAGATGTTAAGATTGTGATTATTGATAGTGTTACTTTTCACTTCCGCCAAGATTTTGAGGACTTGGCTCTCAGGACACGGTTACTTGGTGGAATGGCTTTAAAGTTGATGAACCTTGCAAATAAATATAATCTGGCGGTAAGCAATATGATTGCCTCTTATTCTCTGTGGCAGGTTGTCATATTCAATCAAGTGACCACTAAGCATAAAGAAGGTTCATTCCAATTAAGTCTTGCATTGGGTGATAGCTGGTCACATTGTTGCACAAACCGAGTCATACTGTATTGGAACGGTGATGAACGAAATGCACACATAGACAAGTCGCCTTCTCTGAAATCAGCATCAGCTCCATTTTCTGTGACCAGGAAAGGGATTAGGAATTCTGCTTCAAACCATAAGCGAATCAAATTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Rad51

Protein Analysis

359

Amino Acids

39.8

Weight (kDa)

6.56

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45280 AT2G45280
fragaria_vesca	FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500 FvH4_7g11500
malus_domestica	MD02G1207000.v1.1 MD02G1207100.v1.1 MD07G1119400.v1.1
prunus_persica	Prupe.2G143400_v2.0.a1
pyrus_communis	pycom07g10520
rosa_chinensis	RchiOBHm_Chr1g0349891 RchiOBHm_Chr1g0349941
rosa_laevigata	RLG00000028514
rosa_roxburghii	Rroxscaffold_4G00305260
rosa_rugosa	Rorug01G0207000 Rorug01G0207100 Rorug01G0207200
rosa_samantha	Rh1AG223700 Rh1BG191000 Rh1CG208500 Rh1DG219600
rosa_wichuraiana	Rw0G007610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	823
AccBSI	CCGCTC	1 cut(s)	466
AciI	CCGC	4 cut(s)	466, 595, 706, 797
AcsI	RAATTY	5 cut(s)	120, 393, 555, 644, 1039
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	301, 350, 1029
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	6 cut(s)	143, 374, 554, 577, 847, 1050
AjnI	CCWGG	1 cut(s)	1022
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	7 cut(s)	137, 364, 453, 488, 520, 909, 1007
AluI	AGCT	7 cut(s)	137, 364, 453, 488, 520, 909, 1007
Alw21I	GWGCWC	1 cut(s)	217
Alw44I	GTGCAC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	1 cut(s)	412
ApaLI	GTGCAC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	5 cut(s)	120, 393, 555, 644, 1039
AseI	ATTAAT	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	914, 965
AsuII	TTCGAA	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	178
AvrII	CCTAGG	1 cut(s)	415
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	462
BciT130I	CCWGG	1 cut(s)	1024
BcnI	CCSGG	1 cut(s)	345
BfaI	CTAG	2 cut(s)	284, 416
BfmI	CTRYAG	3 cut(s)	169, 492, 601
BfuAI	ACCTGC	1 cut(s)	823
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	1 cut(s)	451
BlnI	CCTAGG	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	345, 1024
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	178
BmrFI	CCNGG	2 cut(s)	345, 1024
BmsI	GCATC	6 cut(s)	38, 167, 270, 357, 606, 1010
Bpu14I	TTCGAA	1 cut(s)	538
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	295, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 350, 1029
Bse1I	ACTGG	2 cut(s)	214, 398
BseBI	CCWGG	1 cut(s)	1024
BseDI	CCNNGG	2 cut(s)	295, 415
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	301, 350, 1029
BseMII	CTCAG	2 cut(s)	39, 745
BseNI	ACTGG	2 cut(s)	214, 398
BseRI	GAGGAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	462
BseYI	CCCAGC	1 cut(s)	364
BshFI	GGCC	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	301, 350, 1029
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	414
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	538
Bsp1286I	GDGCHC	2 cut(s)	217, 472
Bsp143I	GATC	2 cut(s)	112, 280
BspACI	CCGC	4 cut(s)	466, 595, 706, 797
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	2 cut(s)	38, 744
BspMAI	CTGCAG	1 cut(s)	605
BspMI	ACCTGC	1 cut(s)	823
BspT104I	TTCGAA	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	466
BsrI	ACTGG	2 cut(s)	214, 398
BssECI	CCNNGG	2 cut(s)	295, 415
BssMI	GATC	2 cut(s)	112, 280
BssT1I	CCWWGG	2 cut(s)	295, 415
Bst2UI	CCWGG	1 cut(s)	1024
Bst4CI	ACNGT	4 cut(s)	170, 741, 942, 953
Bst6I	CTCTTC	1 cut(s)	97
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	58, 468
BstDEI	CTNAG	4 cut(s)	25, 637, 731, 861
BstEII	GGTNACC	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	115, 283
BstMBI	GATC	2 cut(s)	112, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	1024
BstNSI	RCATGY	1 cut(s)	505
BstPI	GGTNACC	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	343, 1022
BstSFI	CTRYAG	3 cut(s)	169, 492, 601
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	291
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	207, 387
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	58, 468
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	2 cut(s)	239, 502
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	4 cut(s)	25, 637, 731, 861
DpnI	GATC	2 cut(s)	114, 282
DpnII	GATC	2 cut(s)	112, 280
DraI	TTTAAA	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	695
Eco130I	CCWWGG	2 cut(s)	295, 415
Eco24I	GRGCYC	1 cut(s)	472
Eco32I	GATATC	2 cut(s)	51, 571
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	1039
EcoRII	CCWGG	1 cut(s)	1022
EcoRV	GATATC	2 cut(s)	51, 571
EcoT14I	CCWWGG	2 cut(s)	295, 415
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	2 cut(s)	295, 415
FaeI	CATG	2 cut(s)	242, 505
FatI	CATG	2 cut(s)	238, 501
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	2 cut(s)	284, 416
GluI	GCNGC	1 cut(s)	451
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	2 cut(s)	242, 505
HindIII	AAGCTT	2 cut(s)	135, 486
HinfI	GANTC	2 cut(s)	933, 1062
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	914, 965
Hpy166II	GTNNAC	3 cut(s)	215, 385, 499
Hpy188I	TCNGA	2 cut(s)	100, 993
Hpy188III	TCNNGA	7 cut(s)	110, 125, 148, 265, 284, 574, 733
Hpy8I	GTNNAC	3 cut(s)	215, 385, 499
HpyAV	CCTTC	6 cut(s)	6, 145, 440, 523, 866, 996
HpyCH4III	ACNGT	4 cut(s)	170, 741, 942, 953
HpyCH4IV	ACGT	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	25, 637, 731, 861
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	242, 505
Kzo9I	GATC	2 cut(s)	112, 280
LmnI	GCTCC	6 cut(s)	240, 244, 463, 613, 655, 1012
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	6 cut(s)	38, 167, 270, 357, 606, 1010
MaeI	CTAG	2 cut(s)	284, 416
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	8 cut(s)	15, 322, 504, 691, 741, 853, 912, 1018
MalI	GATC	2 cut(s)	114, 282
MbiI	CCGCTC	1 cut(s)	466
MboI	GATC	2 cut(s)	112, 280
MboII	GAAGA	1 cut(s)	84
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	2 cut(s)	217, 472
MlyI	GAGTC	1 cut(s)	942
MmeI	TCCRAC	2 cut(s)	123, 156
MnlI	CCTC	5 cut(s)	32, 106, 235, 712, 826
MseI	TTAA	4 cut(s)	309, 669, 761, 887
MslI	CAYNNNNRTG	2 cut(s)	513, 663
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	345, 1024
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	112, 280
NlaIII	CATG	2 cut(s)	242, 505
NmuCI	GTSAC	4 cut(s)	504, 853, 912, 1018
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	538
PaeR7I	CTCGAG	1 cut(s)	108
PciI	ACATGT	1 cut(s)	501
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	1062
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	1 cut(s)	941
PpsI	GAGTC	1 cut(s)	941
PscI	ACATGT	1 cut(s)	501
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	1022
PspEI	GGTNACC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	1022
PspPI	GGNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	2 cut(s)	513, 663
SaqAI	TTAA	4 cut(s)	309, 669, 761, 887
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	2 cut(s)	112, 280
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	942
ScrFI	CCNGG	2 cut(s)	345, 1024
SduI	GDGCHC	2 cut(s)	217, 472
SfaNI	GCATC	6 cut(s)	38, 167, 270, 357, 606, 1010
SfcI	CTRYAG	3 cut(s)	169, 492, 601
Sfr274I	CTCGAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	538
SinI	GGWCC	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	2 cut(s)	513, 663
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
SsiI	CCGC	4 cut(s)	466, 595, 706, 797
SspMI	CTAG	2 cut(s)	284, 416
StyD4I	CCNGG	2 cut(s)	343, 1022
StyI	CCWWGG	2 cut(s)	295, 415
TaaI	ACNGT	4 cut(s)	170, 741, 942, 953
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	109, 538
TfiI	GAWTC	1 cut(s)	1062
Tru1I	TTAA	4 cut(s)	309, 669, 761, 887
Tru9I	TTAA	4 cut(s)	309, 669, 761, 887
TscAI	CASTG	2 cut(s)	214, 387
TseFI	GTSAC	4 cut(s)	504, 853, 912, 1018
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	4 cut(s)	504, 853, 912, 1018
TspDTI	ATGAA	4 cut(s)	637, 785, 867, 972
TspGWI	ACGGA	2 cut(s)	458, 626
TspRI	CASTG	2 cut(s)	214, 387
VneI	GTGCAC	1 cut(s)	213
VpaK11BI	GGWCC	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	309
XapI	RAATTY	5 cut(s)	120, 393, 555, 644, 1039
XbaI	TCTAGA	1 cut(s)	283
XceI	RCATGY	1 cut(s)	505
XhoI	CTCGAG	1 cut(s)	108
XmaJI	CCTAGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	284, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.