Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014938

Physical Location & Seq

Genomic Coordinates Forward (+)

18727504 .. 18729272

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGATCAGGTCTCTCGCTCTCTTCCTCCACCTTTTCTCTCAAGAGATCTCCATCTTCACCCACACCATCAATTCCAGCATCAGCAGCAGCAGCAGCAACAGAATCACGGCCACGATATAGACCAGCACCGAATCGGTGGGCTAAAACGTGACCGAGATGCTGATATCGATCCCAACGAGCACTCTTCAGCCGGAAAAGATCAAAGTACTCCTGGCTCCGGTGGAGAAAGCGGCGGCGGAGGAGGAGGAGATAATCACATCACGAGAAGGCCACGTGGCAGACCAGCGGGATCTAAGAACAAACCAAAACCGCCAATCATCATCACTCGAGACAGCGCAAACGCTCTCAAATCTCATGTCATGGAAGTAGCAAACGGATGTGACGTCATGGAAAGTGTCACCGTCTTCGCTCGCCGTCGCCAACGTGGCATCTGCGTTTTGAGCGGAAACGGCGCCGTTACCAACGTTACCATAAGACAACCAGCTTCAGTACCTGGTGGTGGCTCATCTGTCGTTAACTTACACGGACGTTTCGAGATTCTTTCTCTCTCGGGATCATTCCTTCCTCCTCCGGCTCCACCAGCTGCGTCAGGTCTAACGATTTACTTAGCCGGTGGTCAGGGACAGGTTGTTGGAGGAAGCGTGGTTGGTCCACTCATGGCTTCAGGACCTGTAGTGATTATGGCAGCTTCGTTTGGAAACGCTGCGTATGAGAGACTGCCGTTGGAGGAAGACGATCAAGAAGAGCAAACAGCTGGAGCGGTTGCTAATAATATCGATGGAAACGCAACAATGGGTGGTGGAACGCAAACGCAAACTCAGACGCAGCAGCAACAGCAACAACAGTTGATGCAAGATCCGACGTCGTTTATACAAGGGTTGCCTCCGAATCTTATGAATTCTGTTCAATTGCCAGCTGAAGCTTATTGGGGAACTCCGAGACCATCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

317

Amino Acids

33.52

Weight (kDa)

6.45

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	118 - 232	1.4e-23	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45430 AT3G60870
fragaria_vesca	FvH4_7g12040
malus_domestica	MD02G1201800.v1.1
prunus_persica	Prupe.2G147000_v2.0.a1
pyrus_communis	pycom07g11310
rosa_chinensis	RchiOBHm_Chr1g0350751
rosa_laevigata	RLG00000028456
rosa_multiflora	Rmu_sc0007810.1_g000008
rosa_roxburghii	Rroxscaffold_4G00304520
rosa_rugosa	Rorug01G0213900
rosa_samantha	Rh1AG228000 Rh1BG197500 Rh1CG213000 Rh1DG225400
rosa_wichuraiana	Rw1G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	387, 866
AccB1I	GGYRCC	1 cut(s)	452
AccBSI	CCGCTC	2 cut(s)	444, 761
AciI	CCGC	7 cut(s)	231, 234, 237, 287, 311, 444, 761
AclI	AACGTT	1 cut(s)	465
AclWI	GGATC	5 cut(s)	12, 164, 298, 562, 851
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	898
AcuI	CTGAAG	4 cut(s)	171, 471, 648, 939
AcvI	CACGTG	1 cut(s)	275
AcyI	GRCGYC	3 cut(s)	384, 453, 863
AfaI	GTAC	2 cut(s)	208, 492
AfiI	CCNNNNNNNGG	2 cut(s)	218, 500
AgsI	TTSAA	1 cut(s)	908
AjnI	CCWGG	2 cut(s)	211, 493
AluBI	AGCT	6 cut(s)	485, 584, 689, 755, 917, 923
AluI	AGCT	6 cut(s)	485, 584, 689, 755, 917, 923
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	4 cut(s)	16, 324, 709, 934
AlwI	GGATC	5 cut(s)	12, 164, 298, 562, 851
AlwNI	CAGNNNCTG	2 cut(s)	494, 671
Ama87I	CYCGRG	2 cut(s)	327, 550
AoxI	GGCC	2 cut(s)	109, 269
ApeKI	GCWGC	9 cut(s)	85, 88, 91, 94, 584, 686, 704, 826, 829
ApoI	RAATTY	1 cut(s)	898
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AspLEI	GCGC	2 cut(s)	338, 455
AspS9I	GGNCC	2 cut(s)	650, 668
AsuHPI	GGTGA	2 cut(s)	50, 391
AvaI	CYCGRG	2 cut(s)	327, 550
AvaII	GGWCC	2 cut(s)	650, 668
BanI	GGYRCC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	262
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	397, 738
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	9 cut(s)	97, 100, 103, 106, 571, 691, 698, 838, 841
BccI	CCATC	4 cut(s)	60, 75, 773, 952
BceAI	ACGGC	5 cut(s)	124, 399, 440, 466, 706
BciT130I	CCWGG	2 cut(s)	213, 495
BcoDI	GTCTC	4 cut(s)	16, 324, 709, 934
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	426
BglII	AGATCT	1 cut(s)	46
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	213, 495
Bme18I	GGWCC	2 cut(s)	650, 668
BmeT110I	CYCGRG	2 cut(s)	327, 550
BmgT120I	GGNCC	2 cut(s)	650, 668
BmiI	GGNNCC	3 cut(s)	217, 454, 576
BmrFI	CCNGG	2 cut(s)	213, 495
BmsI	GCATC	4 cut(s)	88, 148, 438, 840
BpiI	GAAGAC	2 cut(s)	397, 738
BpmI	CTGGAG	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	25
Bsa29I	ATCGAT	2 cut(s)	168, 777
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	2 cut(s)	51, 168
BsaHI	GRCGYC	3 cut(s)	384, 453, 863
BsaI	GGTCTC	2 cut(s)	16, 934
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 500
Bse118I	RCCGGY	1 cut(s)	611
Bse8I	GATNNNNATC	2 cut(s)	51, 168
BseBI	CCWGG	2 cut(s)	213, 495
BseCI	ATCGAT	2 cut(s)	168, 777
BseGI	GGATG	1 cut(s)	383
BseJI	GATNNNNATC	2 cut(s)	51, 168
BseLI	CCNNNNNNNGG	2 cut(s)	218, 500
BseMII	CTCAG	1 cut(s)	833
BseRI	GAGGAG	4 cut(s)	255, 258, 261, 558
BseXI	GCAGC	9 cut(s)	97, 100, 103, 106, 571, 691, 698, 838, 841
BshFI	GGCC	2 cut(s)	111, 271
BshNI	GGYRCC	1 cut(s)	452
BshVI	ATCGAT	2 cut(s)	168, 777
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	2 cut(s)	327, 550
BsiSI	CCGG	4 cut(s)	192, 219, 572, 612
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	218, 500
BsmAI	GTCTC	4 cut(s)	16, 324, 709, 934
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	111, 271
Bso31I	GGTCTC	2 cut(s)	16, 934
BsoBI	CYCGRG	2 cut(s)	327, 550
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	8 cut(s)	4, 46, 169, 199, 290, 554, 736, 856
BspACI	CCGC	7 cut(s)	231, 234, 237, 287, 311, 444, 761
BspANI	GGCC	2 cut(s)	111, 271
BspCNI	CTCAG	1 cut(s)	832
BspDI	ATCGAT	2 cut(s)	168, 777
BspLI	GGNNCC	3 cut(s)	217, 454, 576
BspPI	GGATC	5 cut(s)	12, 164, 298, 562, 851
BspQI	GCTCTTC	1 cut(s)	738
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	2 cut(s)	16, 934
BsrBI	CCGCTC	2 cut(s)	444, 761
BsrFI	RCCGGY	1 cut(s)	611
BssAI	RCCGGY	1 cut(s)	611
BssMI	GATC	8 cut(s)	4, 46, 169, 199, 290, 554, 736, 856
BssNI	GRCGYC	3 cut(s)	384, 453, 863
BssSI	CACGAG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	262
Bst2UI	CCWGG	2 cut(s)	213, 495
Bst4CI	ACNGT	2 cut(s)	403, 846
Bst6I	CTCTTC	3 cut(s)	27, 190, 738
BstACI	GRCGYC	3 cut(s)	384, 453, 863
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	412, 915
BstDEI	CTNAG	3 cut(s)	294, 607, 819
BstF5I	GGATG	1 cut(s)	383
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	338, 455
BstKTI	GATC	8 cut(s)	7, 49, 172, 202, 293, 557, 739, 859
BstMAI	GTCTC	4 cut(s)	16, 324, 709, 934
BstMBI	GATC	8 cut(s)	4, 46, 169, 199, 290, 554, 736, 856
BstMWI	GCNNNNNNNGC	8 cut(s)	85, 91, 94, 426, 441, 450, 581, 835
BstNI	CCWGG	2 cut(s)	213, 495
BstSCI	CCNGG	2 cut(s)	211, 493
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	9 cut(s)	97, 100, 103, 106, 571, 691, 698, 838, 841
BstV2I	GAAGAC	2 cut(s)	397, 738
BstX2I	RGATCY	3 cut(s)	46, 290, 856
BstYI	RGATCY	3 cut(s)	46, 290, 856
Bsu15I	ATCGAT	2 cut(s)	168, 777
BsuRI	GGCC	2 cut(s)	111, 271
BsuTUI	ATCGAT	2 cut(s)	168, 777
BtsCI	GGATG	1 cut(s)	383
Cac8I	GCNNGC	2 cut(s)	412, 915
CaiI	CAGNNNCTG	2 cut(s)	494, 671
CfoI	GCGC	2 cut(s)	338, 455
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	650, 668
ClaI	ATCGAT	2 cut(s)	168, 777
CseI	GACGC	2 cut(s)	576, 832
CsiI	ACCWGGT	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	207, 491
CviAII	CATG	4 cut(s)	356, 361, 388, 658
CviQI	GTAC	2 cut(s)	207, 491
DdeI	CTNAG	3 cut(s)	294, 607, 819
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	8 cut(s)	6, 48, 171, 201, 292, 556, 738, 858
DpnII	GATC	8 cut(s)	4, 46, 169, 199, 290, 554, 736, 856
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	3 cut(s)	27, 190, 738
EarI	CTCTTC	3 cut(s)	27, 190, 738
EciI	GGCGGA	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	16, 934
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	650, 668
Eco57I	CTGAAG	4 cut(s)	171, 471, 648, 939
Eco72I	CACGTG	1 cut(s)	275
Eco88I	CYCGRG	2 cut(s)	327, 550
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRI	GAATTC	1 cut(s)	898
EcoRII	CCWGG	2 cut(s)	211, 493
EcoRV	GATATC	1 cut(s)	166
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
FaeI	CATG	4 cut(s)	359, 364, 391, 661
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	4 cut(s)	355, 360, 387, 657
FauI	CCCGC	1 cut(s)	280
FokI	GGATG	1 cut(s)	390
GlaI	GCGC	2 cut(s)	337, 454
GsuI	CTGGAG	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	111, 271
HapII	CCGG	4 cut(s)	192, 219, 572, 612
HgaI	GACGC	2 cut(s)	576, 832
HhaI	GCGC	2 cut(s)	338, 455
Hin1I	GRCGYC	3 cut(s)	384, 453, 863
Hin1II	CATG	4 cut(s)	359, 364, 391, 661
Hin6I	GCGC	2 cut(s)	336, 453
HinP1I	GCGC	2 cut(s)	336, 453
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	921
HinfI	GANTC	4 cut(s)	103, 132, 538, 889
HpaI	GTTAAC	1 cut(s)	517
HpaII	CCGG	4 cut(s)	192, 219, 572, 612
HphI	GGTGA	2 cut(s)	50, 391
Hpy166II	GTNNAC	2 cut(s)	517, 653
Hpy188I	TCNGA	4 cut(s)	822, 861, 888, 939
Hpy188III	TCNNGA	7 cut(s)	42, 262, 329, 535, 552, 666, 740
Hpy8I	GTNNAC	2 cut(s)	517, 653
Hpy99I	CGWCG	3 cut(s)	420, 865, 868
HpyAV	CCTTC	2 cut(s)	261, 572
HpyCH4III	ACNGT	2 cut(s)	403, 846
HpyCH4IV	ACGT	7 cut(s)	148, 274, 384, 424, 465, 529, 863
HpyCH4V	TGCA	1 cut(s)	853
HpyF10VI	GCNNNNNNNGC	8 cut(s)	85, 91, 94, 426, 441, 450, 581, 835
HpyF3I	CTNAG	3 cut(s)	294, 607, 819
HpySE526I	ACGT	7 cut(s)	148, 274, 384, 424, 465, 529, 863
Hsp92I	GRCGYC	3 cut(s)	384, 453, 863
Hsp92II	CATG	4 cut(s)	359, 364, 391, 661
HspAI	GCGC	2 cut(s)	336, 453
KasI	GGCGCC	1 cut(s)	452
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	8 cut(s)	4, 46, 169, 199, 290, 554, 736, 856
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	3 cut(s)	221, 580, 758
Lsp1109I	GCAGC	9 cut(s)	97, 100, 103, 106, 571, 691, 698, 838, 841
LweI	GCATC	4 cut(s)	88, 148, 438, 840
MabI	ACCWGGT	1 cut(s)	493
MaeII	ACGT	7 cut(s)	148, 274, 384, 424, 465, 529, 863
MaeIII	GTNAC	5 cut(s)	149, 380, 397, 457, 466
MalI	GATC	8 cut(s)	6, 48, 171, 201, 292, 556, 738, 858
MbiI	CCGCTC	2 cut(s)	444, 761
MboI	GATC	8 cut(s)	4, 46, 169, 199, 290, 554, 736, 856
MboII	GAAGA	6 cut(s)	14, 47, 177, 397, 743, 755
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	3 cut(s)	46, 290, 856
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	3 cut(s)	71, 898, 908
Mly113I	GGCGCC	1 cut(s)	453
MmeI	TCCRAC	3 cut(s)	613, 705, 884
MnlI	CCTC	9 cut(s)	36, 233, 236, 239, 576, 579, 629, 721, 894
MseI	TTAA	1 cut(s)	516
MspA1I	CMGCKG	4 cut(s)	287, 584, 755, 917
MspI	CCGG	4 cut(s)	192, 219, 572, 612
MspR9I	CCNGG	2 cut(s)	213, 495
MunI	CAATTG	1 cut(s)	908
MvaI	CCWGG	2 cut(s)	213, 495
MwoI	GCNNNNNNNGC	8 cut(s)	85, 91, 94, 426, 441, 450, 581, 835
NarI	GGCGCC	1 cut(s)	453
NdeII	GATC	8 cut(s)	4, 46, 169, 199, 290, 554, 736, 856
NlaIII	CATG	4 cut(s)	359, 364, 391, 661
NlaIV	GGNNCC	3 cut(s)	217, 454, 576
NmuCI	GTSAC	3 cut(s)	149, 380, 397
PaeR7I	CTCGAG	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 381, 531
PfeI	GAWTC	4 cut(s)	103, 132, 538, 889
PluTI	GGCGCC	1 cut(s)	456
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	668
Psp1406I	AACGTT	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	211, 493
PspCI	CACGTG	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	211, 493
PspN4I	GGNNCC	3 cut(s)	217, 454, 576
PspPI	GGNCC	2 cut(s)	650, 668
PspPPI	RGGWCCY	1 cut(s)	668
PstNI	CAGNNNCTG	2 cut(s)	494, 671
PsuI	RGATCY	3 cut(s)	46, 290, 856
PvuII	CAGCTG	3 cut(s)	584, 755, 917
RsaI	GTAC	2 cut(s)	208, 492
RsaNI	GTAC	2 cut(s)	207, 491
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	1 cut(s)	516
Sau3AI	GATC	8 cut(s)	4, 46, 169, 199, 290, 554, 736, 856
Sau96I	GGNCC	2 cut(s)	650, 668
ScaI	AGTACT	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	213, 495
SduI	GDGCHC	1 cut(s)	183
SexAI	ACCWGGT	1 cut(s)	493
SfaNI	GCATC	4 cut(s)	88, 148, 438, 840
SfcI	CTRYAG	1 cut(s)	672
SfoI	GGCGCC	1 cut(s)	454
Sfr274I	CTCGAG	1 cut(s)	327
SinI	GGWCC	2 cut(s)	650, 668
SlaI	CTCGAG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	40, 327
SmoI	CTYRAG	2 cut(s)	40, 327
Sse9I	AATT	3 cut(s)	71, 898, 908
SsiI	CCGC	7 cut(s)	231, 234, 237, 287, 311, 444, 761
SspDI	GGCGCC	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	211, 493
TaaI	ACNGT	2 cut(s)	403, 846
TaiI	ACGT	7 cut(s)	151, 277, 387, 427, 468, 532, 866
TaqI	TCGA	4 cut(s)	168, 328, 534, 777
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	3 cut(s)	71, 898, 908
TatI	WGTACW	1 cut(s)	206
TauI	GCSGC	2 cut(s)	234, 237
TfiI	GAWTC	4 cut(s)	103, 132, 538, 889
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TseFI	GTSAC	3 cut(s)	149, 380, 397
TseI	GCWGC	9 cut(s)	85, 88, 91, 94, 584, 686, 704, 826, 829
Tsp45I	GTSAC	3 cut(s)	149, 380, 397
TspDTI	ATGAA	1 cut(s)	911
TspGWI	ACGGA	2 cut(s)	390, 540
VpaK11BI	GGWCC	2 cut(s)	650, 668
XapI	RAATTY	1 cut(s)	898
XhoI	CTCGAG	1 cut(s)	327
ZraI	GACGTC	2 cut(s)	385, 864
ZrmI	AGTACT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.