Rw1G019770

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
43044020 .. 43044997
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019770.1

Sequence Viewer

Length: 978 bp
ATGGATCCGGTTGCAGCACACGGCAGACCACTTCCGCCTCCGTTTTTGACGAGAGATCTTCATCTAAATCACCCTCATCATCAGTTCCAACACCACCCTCACCTCCTCCACCACCACCAGAATTCCGAAGACGAGCAGAACAGCTCCGGCTTAAACCACCACCGCGGAATCAAGCGCGATCGGGACGAAAACACCTCCGGCGCCACCACCACGAACTCGCTGGAAGGCAAGGACCAGCTTGGTGGGTCCACTAGCGGAGAAGGCGGCGAGATCACGAGACGACCTCGTGGCCGACCCGCTGGCTCCAAGAACAAGGCCAAACCCCCAATCATCATCACGCGCGACAGCGCCAACGCGTTGCGGTCTCACGTCATGGAGGTCGCCAACGGCTGCGACATCATGGACTCCATCTCCACCTTCGCCCGCCGGAGACAAAGAGGCGTTTGCATTCTCAGCGGCAGCGGCACCGTCACCAATGTAACCCTCCGCCAGCCAGCTTCGCCCGGCGCCGTGGTCACCCTCCACGGTAGGTTCGAAATTCTTTCCCTTTCAGGATCATTCCTGCCCCCACCTGCTCCGCCCGCGGCGTCAGGACTCACCATTTACCTGGCTGGCGGGCAGGGACAGGTAGTCGGAGGCAGCGTCGTGGGCCCGCTCCTAGCGTCCGGCCCTGTGGTCATTATGGCAGCGAGCTTCGGTAATGCTGCCTACGAGAGACTGCCCCTGGAGGAGGAGGAGGCCACGGCGGTGACGCCTATGCCTGGAAGCGGGCCCCTTGGCTCCCCTGGAATTGGCGGAGGAGAGCACCCGCAACAGTCACAAGTTCAACTAGTACAGCAGCAGCAGCAGCAGATGTTGCAAGATGCTAATAACTCATCACCTTCTTCCTCACTCTTTCATGGGATGCAGCAAAATCTTCTAAATTCGGTTCAATTGCCCGCTGAGGCATATTGGGGCACAGCTCGCCCTCCTTACTGA

Protein Analysis

325

Amino Acids

34.41

Weight (kDa)

7.0

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 121 - 232 6.6e-25 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45430 AT3G60870
fragaria_vesca FvH4_7g12040
malus_domestica MD02G1201800.v1.1
prunus_persica Prupe.2G147000_v2.0.a1
pyrus_communis pycom07g11310
rosa_chinensis RchiOBHm_Chr1g0350751
rosa_laevigata RLG00000028456
rosa_multiflora Rmu_sc0007810.1_g000008
rosa_roxburghii Rroxscaffold_4G00304520
rosa_rugosa Rorug01G0213900
rosa_samantha Rh1AG228000 Rh1BG197500 Rh1CG213000 Rh1DG225400
rosa_wichuraiana Rw1G019770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 580
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 3 cut(s) 200, 464, 506
AccBSI CCGCTC 1 cut(s) 655
AccII CGCG 6 cut(s) 165, 177, 340, 342, 356, 584
AclWI GGATC 2 cut(s) 12, 562
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 3 cut(s) 121, 537, 922
AcyI GRCGYC 4 cut(s) 201, 507, 587, 752
AfaI GTAC 1 cut(s) 834
AfiI CCNNNNNNNGG 4 cut(s) 730, 761, 767, 791
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 2 cut(s) 827, 932
AhdI GACNNNNNGTC 1 cut(s) 629
AhlI ACTAGT 1 cut(s) 829
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 4 cut(s) 606, 723, 760, 784
AleI CACNNNNGTG 1 cut(s) 746
AluBI AGCT 5 cut(s) 144, 238, 497, 693, 962
AluI AGCT 5 cut(s) 144, 238, 497, 693, 962
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 4 cut(s) 271, 369, 424, 709
AlwI GGATC 2 cut(s) 12, 562
AoxI GGCC 6 cut(s) 289, 315, 649, 667, 738, 770
ApaI GGGCCC 2 cut(s) 653, 774
ApoI RAATTY 3 cut(s) 121, 537, 922
AspLEI GCGC 5 cut(s) 177, 203, 342, 350, 509
AspS9I GGNCC 7 cut(s) 232, 246, 649, 650, 668, 770, 771
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 7 cut(s) 62, 92, 463, 508, 589, 760, 870
AsuII TTCGAA 1 cut(s) 534
AvaII GGWCC 2 cut(s) 232, 246
BaeGI GKGCMC 3 cut(s) 653, 774, 959
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 3 cut(s) 200, 464, 506
BanII GRGCYC 2 cut(s) 653, 774
BauI CACGAG 2 cut(s) 274, 285
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 807
BbvCI CCTCAGC 1 cut(s) 942
BccI CCATC 1 cut(s) 416
BceAI ACGGC 4 cut(s) 37, 403, 494, 759
BciT130I CCWGG 4 cut(s) 608, 725, 762, 786
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 4 cut(s) 271, 369, 424, 709
BcuI ACTAGT 1 cut(s) 829
BfaI CTAG 3 cut(s) 252, 659, 830
BfoI RGCGCY 3 cut(s) 204, 351, 510
BfuAI ACCTGC 1 cut(s) 580
BglII AGATCT 1 cut(s) 55
Bme1390I CCNGG 5 cut(s) 504, 608, 725, 762, 786
Bme18I GGWCC 2 cut(s) 232, 246
BmeRI GACNNNNNGTC 1 cut(s) 629
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 7 cut(s) 232, 246, 649, 650, 668, 770, 771
BmrFI CCNGG 5 cut(s) 504, 608, 725, 762, 786
BmsI GCATC 2 cut(s) 853, 894
BpiI GAAGAC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpmI CTGGAG 1 cut(s) 746
Bpu10I CCTNAGC 1 cut(s) 942
Bpu14I TTCGAA 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 504
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 4 cut(s) 201, 507, 587, 752
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 8 cut(s) 163, 510, 523, 582, 723, 741, 775, 784
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 4 cut(s) 395, 425, 627, 657
Bsc4I CCNNNNNNNGG 4 cut(s) 730, 761, 767, 791
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 4 cut(s) 608, 725, 762, 786
BseDI CCNNGG 8 cut(s) 163, 510, 523, 582, 723, 741, 775, 784
BseGI GGATG 1 cut(s) 909
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 4 cut(s) 730, 761, 767, 791
BseMII CTCAG 2 cut(s) 466, 933
BseRI GAGGAG 5 cut(s) 95, 743, 746, 749, 813
BseSI GKGCMC 3 cut(s) 653, 774, 959
Bsh1236I CGCG 6 cut(s) 165, 177, 340, 342, 356, 584
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 6 cut(s) 291, 317, 651, 669, 740, 772
BshNI GGYRCC 3 cut(s) 200, 464, 506
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 807
BsiSI CCGG 6 cut(s) 8, 147, 198, 427, 504, 666
BslFI GGGAC 2 cut(s) 197, 636
BslI CCNNNNNNNGG 4 cut(s) 730, 761, 767, 791
BsmAI GTCTC 4 cut(s) 271, 369, 424, 709
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 2 cut(s) 197, 636
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 6 cut(s) 291, 317, 651, 669, 740, 772
Bso31I GGTCTC 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 534
Bsp120I GGGCCC 2 cut(s) 649, 770
Bsp1286I GDGCHC 4 cut(s) 653, 774, 807, 959
Bsp143I GATC 5 cut(s) 4, 55, 178, 270, 554
BspANI GGCC 6 cut(s) 291, 317, 651, 669, 740, 772
BspCNI CTCAG 2 cut(s) 465, 934
BspFNI CGCG 6 cut(s) 165, 177, 340, 342, 356, 584
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 2 cut(s) 12, 562
BspT104I TTCGAA 1 cut(s) 534
BspT107I GGYRCC 3 cut(s) 200, 464, 506
BspTNI GGTCTC 1 cut(s) 369
BsrBI CCGCTC 1 cut(s) 655
BssECI CCNNGG 8 cut(s) 163, 510, 523, 582, 723, 741, 775, 784
BssMI GATC 5 cut(s) 4, 55, 178, 270, 554
BssNI GRCGYC 4 cut(s) 201, 507, 587, 752
BssSI CACGAG 2 cut(s) 274, 285
BssT1I CCWWGG 1 cut(s) 775
Bst2BI CACGAG 2 cut(s) 274, 285
Bst2UI CCWGG 4 cut(s) 608, 725, 762, 786
Bst4CI ACNGT 3 cut(s) 469, 527, 816
BstACI GRCGYC 4 cut(s) 201, 507, 587, 752
BstAPI GCANNNNNTGC 1 cut(s) 856
BstBI TTCGAA 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 452, 942
BstDSI CCRYGG 5 cut(s) 163, 510, 523, 582, 741
BstEII GGTNACC 1 cut(s) 514
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 1 cut(s) 909
BstFNI CGCG 6 cut(s) 165, 177, 340, 342, 356, 584
BstH2I RGCGCY 3 cut(s) 204, 351, 510
BstHHI GCGC 5 cut(s) 177, 203, 342, 350, 509
BstKTI GATC 5 cut(s) 7, 58, 181, 273, 557
BstMAI GTCTC 4 cut(s) 271, 369, 424, 709
BstMBI GATC 5 cut(s) 4, 55, 178, 270, 554
BstMCI CGRYCG 1 cut(s) 181
BstNI CCWGG 4 cut(s) 608, 725, 762, 786
BstPI GGTNACC 1 cut(s) 514
BstSCI CCNGG 5 cut(s) 502, 606, 723, 760, 784
BstSLI GKGCMC 3 cut(s) 653, 774, 959
BstUI CGCG 6 cut(s) 165, 177, 340, 342, 356, 584
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 4, 55
BstXI CCANNNNNNTGG 2 cut(s) 242, 607
BstYI RGATCY 2 cut(s) 4, 55
BsuRI GGCC 6 cut(s) 291, 317, 651, 669, 740, 772
BtgI CCRYGG 5 cut(s) 163, 510, 523, 582, 741
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 1 cut(s) 909
BveI ACCTGC 1 cut(s) 580
CfoI GCGC 5 cut(s) 177, 203, 342, 350, 509
Cfr13I GGNCC 7 cut(s) 232, 246, 649, 650, 668, 770, 771
Cfr42I CCGCGG 2 cut(s) 166, 585
CseI GACGC 4 cut(s) 576, 631, 651, 760
Csp6I GTAC 1 cut(s) 833
CviAII CATG 3 cut(s) 373, 400, 899
CviQI GTAC 1 cut(s) 833
DdeI CTNAG 2 cut(s) 452, 942
DinI GGCGCC 2 cut(s) 202, 508
DpnI GATC 5 cut(s) 6, 57, 180, 272, 556
DpnII GATC 5 cut(s) 4, 55, 178, 270, 554
DriI GACNNNNNGTC 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 289
Eam1105I GACNNNNNGTC 1 cut(s) 629
EciI GGCGGA 4 cut(s) 24, 476, 567, 810
Eco130I CCWWGG 1 cut(s) 775
Eco24I GRGCYC 2 cut(s) 653, 774
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 232, 246
Eco91I GGTNACC 1 cut(s) 514
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoO109I RGGNCCY 1 cut(s) 771
EcoO65I GGTNACC 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 4 cut(s) 606, 723, 760, 784
EcoT14I CCWWGG 1 cut(s) 775
EcoT38I GRGCYC 2 cut(s) 653, 774
EgeI GGCGCC 2 cut(s) 202, 508
EheI GGCGCC 2 cut(s) 202, 508
ErhI CCWWGG 1 cut(s) 775
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 3 cut(s) 376, 403, 902
FaiI YATR 6 cut(s) 374, 401, 683, 758, 900, 949
FaqI GGGAC 2 cut(s) 197, 636
FatI CATG 3 cut(s) 372, 399, 898
FauI CCCGC 8 cut(s) 304, 431, 589, 608, 660, 761, 816, 946
FokI GGATG 1 cut(s) 916
FriOI GRGCYC 2 cut(s) 653, 774
FspBI CTAG 3 cut(s) 252, 659, 830
GlaI GCGC 5 cut(s) 176, 202, 341, 349, 508
GsuI CTGGAG 1 cut(s) 746
HaeII RGCGCY 3 cut(s) 204, 351, 510
HaeIII GGCC 6 cut(s) 291, 317, 651, 669, 740, 772
HapII CCGG 6 cut(s) 8, 147, 198, 427, 504, 666
HgaI GACGC 4 cut(s) 576, 631, 651, 760
HhaI GCGC 5 cut(s) 177, 203, 342, 350, 509
Hin1I GRCGYC 4 cut(s) 201, 507, 587, 752
Hin1II CATG 3 cut(s) 376, 403, 902
Hin6I GCGC 5 cut(s) 175, 201, 340, 348, 507
HinP1I GCGC 5 cut(s) 175, 201, 340, 348, 507
HinfI GANTC 3 cut(s) 168, 404, 594
HpaII CCGG 6 cut(s) 8, 147, 198, 427, 504, 666
HphI GGTGA 7 cut(s) 62, 92, 463, 508, 589, 760, 870
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 127, 635
Hpy188III TCNNGA 4 cut(s) 182, 274, 552, 591
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 647
HpyAV CCTTC 4 cut(s) 218, 254, 427, 891
HpyCH4III ACNGT 3 cut(s) 469, 527, 816
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 14, 447, 859, 907
HpyF3I CTNAG 2 cut(s) 452, 942
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 4 cut(s) 201, 507, 587, 752
Hsp92II CATG 3 cut(s) 376, 403, 902
HspAI GCGC 5 cut(s) 175, 201, 340, 348, 507
KasI GGCGCC 2 cut(s) 200, 506
KspI CCGCGG 2 cut(s) 166, 585
Kzo9I GATC 5 cut(s) 4, 55, 178, 270, 554
LmnI GCTCC 5 cut(s) 149, 308, 580, 660, 785
LweI GCATC 2 cut(s) 853, 894
MaeI CTAG 3 cut(s) 252, 659, 830
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 5 cut(s) 469, 478, 514, 748, 816
MalI GATC 5 cut(s) 6, 57, 180, 272, 556
MbiI CCGCTC 1 cut(s) 655
MboI GATC 5 cut(s) 4, 55, 178, 270, 554
MboII GAAGA 4 cut(s) 50, 140, 876, 908
MfeI CAATTG 1 cut(s) 932
MflI RGATCY 2 cut(s) 4, 55
MhlI GDGCHC 4 cut(s) 653, 774, 807, 959
MluCI AATT 5 cut(s) 121, 537, 789, 922, 932
MluI ACGCGT 1 cut(s) 354
Mly113I GGCGCC 2 cut(s) 201, 507
MlyI GAGTC 2 cut(s) 398, 588
MmeI TCCRAC 2 cut(s) 112, 613
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 746
MspA1I CMGCKG 6 cut(s) 165, 299, 456, 462, 584, 941
MspI CCGG 6 cut(s) 8, 147, 198, 427, 504, 666
MspR9I CCNGG 5 cut(s) 504, 608, 725, 762, 786
MunI CAATTG 1 cut(s) 932
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 4 cut(s) 608, 725, 762, 786
MvnI CGCG 6 cut(s) 165, 177, 340, 342, 356, 584
NarI GGCGCC 2 cut(s) 201, 507
NciI CCSGG 1 cut(s) 504
NdeII GATC 5 cut(s) 4, 55, 178, 270, 554
NlaIII CATG 3 cut(s) 376, 403, 902
NmuCI GTSAC 4 cut(s) 469, 514, 748, 816
NspV TTCGAA 1 cut(s) 534
OliI CACNNNNGTG 1 cut(s) 746
PaqCI CACCTGC 1 cut(s) 580
PcsI WCGNNNNNNNCGW 2 cut(s) 531, 639
PctI GAATGC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 168
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 2 cut(s) 398, 588
PluTI GGCGCC 2 cut(s) 204, 510
PpsI GAGTC 2 cut(s) 398, 588
Psp6I CCWGG 4 cut(s) 606, 723, 760, 784
PspEI GGTNACC 1 cut(s) 514
PspGI CCWGG 4 cut(s) 606, 723, 760, 784
PspOMI GGGCCC 2 cut(s) 649, 770
PspPI GGNCC 7 cut(s) 232, 246, 649, 650, 668, 770, 771
PsuI RGATCY 2 cut(s) 4, 55
PvuI CGATCG 1 cut(s) 181
RsaI GTAC 1 cut(s) 834
RsaNI GTAC 1 cut(s) 833
RseI CAYNNNNRTG 1 cut(s) 746
SacII CCGCGG 2 cut(s) 166, 585
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 5 cut(s) 4, 55, 178, 270, 554
Sau96I GGNCC 7 cut(s) 232, 246, 649, 650, 668, 770, 771
SchI GAGTC 2 cut(s) 398, 588
ScrFI CCNGG 5 cut(s) 504, 608, 725, 762, 786
SduI GDGCHC 4 cut(s) 653, 774, 807, 959
SfaNI GCATC 2 cut(s) 853, 894
SfoI GGCGCC 2 cut(s) 202, 508
Sfr303I CCGCGG 2 cut(s) 166, 585
SfuI TTCGAA 1 cut(s) 534
SgrBI CCGCGG 2 cut(s) 166, 585
SinI GGWCC 2 cut(s) 232, 246
SmiMI CAYNNNNRTG 1 cut(s) 746
SpeI ACTAGT 1 cut(s) 829
Sse9I AATT 5 cut(s) 121, 537, 789, 922, 932
SspDI GGCGCC 2 cut(s) 200, 506
SspMI CTAG 3 cut(s) 252, 659, 830
StyD4I CCNGG 5 cut(s) 502, 606, 723, 760, 784
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 3 cut(s) 469, 527, 816
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 534
TasI AATT 5 cut(s) 121, 537, 789, 922, 932
TatI WGTACW 1 cut(s) 832
TauI GCSGC 4 cut(s) 267, 459, 465, 587
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseFI GTSAC 4 cut(s) 469, 514, 748, 816
Tsp45I GTSAC 4 cut(s) 469, 514, 748, 816
TspDTI ATGAA 2 cut(s) 50, 887
TspGWI ACGGA 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 232, 246
XagI CCTNNNNNAGG 1 cut(s) 728
XapI RAATTY 3 cut(s) 121, 537, 922
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XspI CTAG 3 cut(s) 252, 659, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.