Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007810.1

Orthogroup ID

OG0014938

Physical Location & Seq

Genomic Coordinates Forward (+)

52912 .. 53892

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007810.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atggatccggttgcagcacacggcagaccacttccgcctccgtttttgactagagatcttcatctaaatcaccctcatcatcagttccaacaccaccctcacctcctccaccaccaccagaattccgaagacgagcagaacagctccggcttaaaccaccaccgcggaatcaagcgcgatcgggacgaaaacacctccggcgccaccaccacgaactcgctggaaggcaaggaccagcttggtgggtcaactagcggagaaggcggcgagatcacgagacgacctcgtggccgacccgctggctccaagaacaaggccaaacccccaatcatcatcacgcgcgacagcgccaacgcgttgcggtctcacgtcatggaggtcgccaacggctgcgacatcatggactccatctccaccttcgcccgccggagacaaagaggcgtttgcattctcagcggcagcggcaccgtcaccaatgtaaccctccgccagccagcttcgcccggcgccgtggtcaccctccacggtaggttcgaaattctttccctttcaggatcattcctgcccccacctgctccgcccgcggcgtcaggactcaccatttacctggctggcgggcagggacaggtagtgggaggcagcgtcgtgggcccgctcctagcgtccggccctgtggtcattatggcagcgagcttcggtaatgctgcctacgagagactgcccctggaggaggaggaggccacggcggtgacgcctatgcctggaagcggaccccttggctcccccggaatcggcggaggagagcaccagcaacagtcacaagttcaactagtacagcagcagcagcagcagcagatgttgcaagatgctaataactcatcaccttcttcctcactctttcatgggatgcagcaaaatcttctaaattctgttcaattgcccgctgaggcatattggggcacagctcgccctccttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

326

Amino Acids

34.57

Weight (kDa)

7.0

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45430 AT3G60870
fragaria_vesca	FvH4_7g12040
malus_domestica	MD02G1201800.v1.1
prunus_persica	Prupe.2G147000_v2.0.a1
pyrus_communis	pycom07g11310
rosa_chinensis	RchiOBHm_Chr1g0350751
rosa_laevigata	RLG00000028456
rosa_multiflora	Rmu_sc0007810.1_g000008
rosa_roxburghii	Rroxscaffold_4G00304520
rosa_rugosa	Rorug01G0213900
rosa_samantha	Rh1AG228000 Rh1BG197500 Rh1CG213000 Rh1DG225400
rosa_wichuraiana	Rw1G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	3 cut(s)	200, 464, 506
AccBSI	CCGCTC	1 cut(s)	655
AccII	CGCG	6 cut(s)	165, 177, 340, 342, 356, 584
AclWI	GGATC	2 cut(s)	12, 562
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	3 cut(s)	121, 537, 925
AcyI	GRCGYC	4 cut(s)	201, 507, 587, 752
AfaI	GTAC	1 cut(s)	834
AfiI	CCNNNNNNNGG	4 cut(s)	730, 761, 767, 791
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	827, 935
AhlI	ACTAGT	1 cut(s)	829
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	3 cut(s)	606, 723, 760
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	5 cut(s)	144, 238, 497, 693, 965
AluI	AGCT	5 cut(s)	144, 238, 497, 693, 965
Alw21I	GWGCWC	1 cut(s)	807
Alw26I	GTCTC	4 cut(s)	271, 369, 424, 709
AlwI	GGATC	2 cut(s)	12, 562
AoxI	GGCC	5 cut(s)	289, 315, 649, 667, 738
ApaI	GGGCCC	1 cut(s)	653
ApoI	RAATTY	3 cut(s)	121, 537, 925
AspLEI	GCGC	5 cut(s)	177, 203, 342, 350, 509
AspS9I	GGNCC	5 cut(s)	232, 649, 650, 668, 770
AsuC2I	CCSGG	2 cut(s)	504, 786
AsuHPI	GGTGA	7 cut(s)	62, 92, 463, 508, 589, 760, 873
AsuII	TTCGAA	1 cut(s)	534
AvaII	GGWCC	2 cut(s)	232, 770
BaeGI	GKGCMC	2 cut(s)	653, 962
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	3 cut(s)	200, 464, 506
BanII	GRGCYC	1 cut(s)	653
BauI	CACGAG	2 cut(s)	274, 285
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	807
BbvCI	CCTCAGC	1 cut(s)	945
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	4 cut(s)	37, 403, 494, 759
BciT130I	CCWGG	3 cut(s)	608, 725, 762
BcnI	CCSGG	2 cut(s)	504, 786
BcoDI	GTCTC	4 cut(s)	271, 369, 424, 709
BcuI	ACTAGT	1 cut(s)	829
BfaI	CTAG	4 cut(s)	51, 252, 659, 830
BfoI	RGCGCY	3 cut(s)	204, 351, 510
BfuAI	ACCTGC	1 cut(s)	580
BglII	AGATCT	1 cut(s)	55
Bme1390I	CCNGG	5 cut(s)	504, 608, 725, 762, 786
Bme18I	GGWCC	2 cut(s)	232, 770
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	5 cut(s)	232, 649, 650, 668, 770
BmiI	GGNNCC	8 cut(s)	6, 202, 304, 466, 508, 651, 772, 781
BmrFI	CCNGG	5 cut(s)	504, 608, 725, 762, 786
BmsI	GCATC	2 cut(s)	856, 897
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
BpmI	CTGGAG	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	945
Bpu14I	TTCGAA	1 cut(s)	534
BpuMI	CCSGG	2 cut(s)	504, 786
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	4 cut(s)	201, 507, 587, 752
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	8 cut(s)	163, 510, 523, 582, 723, 741, 775, 784
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	4 cut(s)	395, 425, 627, 657
Bsc4I	CCNNNNNNNGG	4 cut(s)	730, 761, 767, 791
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	3 cut(s)	608, 725, 762
BseDI	CCNNGG	8 cut(s)	163, 510, 523, 582, 723, 741, 775, 784
BseGI	GGATG	1 cut(s)	912
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	4 cut(s)	730, 761, 767, 791
BseMII	CTCAG	2 cut(s)	466, 936
BseRI	GAGGAG	5 cut(s)	95, 743, 746, 749, 813
BseSI	GKGCMC	2 cut(s)	653, 962
Bsh1236I	CGCG	6 cut(s)	165, 177, 340, 342, 356, 584
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	5 cut(s)	291, 317, 651, 669, 740
BshNI	GGYRCC	3 cut(s)	200, 464, 506
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	7 cut(s)	8, 147, 198, 427, 504, 666, 786
BslFI	GGGAC	2 cut(s)	197, 636
BslI	CCNNNNNNNGG	4 cut(s)	730, 761, 767, 791
BsmAI	GTCTC	4 cut(s)	271, 369, 424, 709
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	2 cut(s)	197, 636
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	5 cut(s)	291, 317, 651, 669, 740
Bso31I	GGTCTC	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	534
Bsp120I	GGGCCC	1 cut(s)	649
Bsp1286I	GDGCHC	3 cut(s)	653, 807, 962
Bsp143I	GATC	5 cut(s)	4, 55, 178, 270, 554
BspANI	GGCC	5 cut(s)	291, 317, 651, 669, 740
BspCNI	CTCAG	2 cut(s)	465, 937
BspFNI	CGCG	6 cut(s)	165, 177, 340, 342, 356, 584
BspLI	GGNNCC	8 cut(s)	6, 202, 304, 466, 508, 651, 772, 781
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	2 cut(s)	12, 562
BspT104I	TTCGAA	1 cut(s)	534
BspT107I	GGYRCC	3 cut(s)	200, 464, 506
BspTNI	GGTCTC	1 cut(s)	369
BsrBI	CCGCTC	1 cut(s)	655
BssECI	CCNNGG	8 cut(s)	163, 510, 523, 582, 723, 741, 775, 784
BssMI	GATC	5 cut(s)	4, 55, 178, 270, 554
BssNI	GRCGYC	4 cut(s)	201, 507, 587, 752
BssSI	CACGAG	2 cut(s)	274, 285
BssT1I	CCWWGG	1 cut(s)	775
Bst2BI	CACGAG	2 cut(s)	274, 285
Bst2UI	CCWGG	3 cut(s)	608, 725, 762
Bst4CI	ACNGT	3 cut(s)	469, 527, 816
BstACI	GRCGYC	4 cut(s)	201, 507, 587, 752
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstBI	TTCGAA	1 cut(s)	534
BstDEI	CTNAG	2 cut(s)	452, 945
BstDSI	CCRYGG	5 cut(s)	163, 510, 523, 582, 741
BstEII	GGTNACC	1 cut(s)	514
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstF5I	GGATG	1 cut(s)	912
BstFNI	CGCG	6 cut(s)	165, 177, 340, 342, 356, 584
BstH2I	RGCGCY	3 cut(s)	204, 351, 510
BstHHI	GCGC	5 cut(s)	177, 203, 342, 350, 509
BstKTI	GATC	5 cut(s)	7, 58, 181, 273, 557
BstMAI	GTCTC	4 cut(s)	271, 369, 424, 709
BstMBI	GATC	5 cut(s)	4, 55, 178, 270, 554
BstMCI	CGRYCG	1 cut(s)	181
BstNI	CCWGG	3 cut(s)	608, 725, 762
BstPI	GGTNACC	1 cut(s)	514
BstSCI	CCNGG	5 cut(s)	502, 606, 723, 760, 784
BstSLI	GKGCMC	2 cut(s)	653, 962
BstUI	CGCG	6 cut(s)	165, 177, 340, 342, 356, 584
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	2 cut(s)	4, 55
BstXI	CCANNNNNNTGG	2 cut(s)	242, 607
BstYI	RGATCY	2 cut(s)	4, 55
BsuRI	GGCC	5 cut(s)	291, 317, 651, 669, 740
BtgI	CCRYGG	5 cut(s)	163, 510, 523, 582, 741
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	912
BveI	ACCTGC	1 cut(s)	580
CfoI	GCGC	5 cut(s)	177, 203, 342, 350, 509
Cfr13I	GGNCC	5 cut(s)	232, 649, 650, 668, 770
Cfr42I	CCGCGG	2 cut(s)	166, 585
CseI	GACGC	4 cut(s)	576, 631, 651, 760
Csp6I	GTAC	1 cut(s)	833
CviAII	CATG	3 cut(s)	373, 400, 902
CviQI	GTAC	1 cut(s)	833
DdeI	CTNAG	2 cut(s)	452, 945
DinI	GGCGCC	2 cut(s)	202, 508
DpnI	GATC	5 cut(s)	6, 57, 180, 272, 556
DpnII	GATC	5 cut(s)	4, 55, 178, 270, 554
EaeI	YGGCCR	1 cut(s)	289
EciI	GGCGGA	4 cut(s)	24, 476, 567, 810
Eco130I	CCWWGG	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	653
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	232, 770
Eco91I	GGTNACC	1 cut(s)	514
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoO65I	GGTNACC	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	121
EcoRII	CCWGG	3 cut(s)	606, 723, 760
EcoT14I	CCWWGG	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	653
EgeI	GGCGCC	2 cut(s)	202, 508
EheI	GGCGCC	2 cut(s)	202, 508
ErhI	CCWWGG	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	3 cut(s)	376, 403, 905
FaiI	YATR	6 cut(s)	374, 401, 683, 758, 903, 952
FaqI	GGGAC	2 cut(s)	197, 636
FatI	CATG	3 cut(s)	372, 399, 901
FauI	CCCGC	6 cut(s)	304, 431, 589, 608, 660, 949
FokI	GGATG	1 cut(s)	919
FriOI	GRGCYC	1 cut(s)	653
FspBI	CTAG	4 cut(s)	51, 252, 659, 830
GlaI	GCGC	5 cut(s)	176, 202, 341, 349, 508
GsuI	CTGGAG	1 cut(s)	746
HaeII	RGCGCY	3 cut(s)	204, 351, 510
HaeIII	GGCC	5 cut(s)	291, 317, 651, 669, 740
HapII	CCGG	7 cut(s)	8, 147, 198, 427, 504, 666, 786
HgaI	GACGC	4 cut(s)	576, 631, 651, 760
HhaI	GCGC	5 cut(s)	177, 203, 342, 350, 509
Hin1I	GRCGYC	4 cut(s)	201, 507, 587, 752
Hin1II	CATG	3 cut(s)	376, 403, 905
Hin6I	GCGC	5 cut(s)	175, 201, 340, 348, 507
HinP1I	GCGC	5 cut(s)	175, 201, 340, 348, 507
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	4 cut(s)	168, 404, 594, 789
HpaII	CCGG	7 cut(s)	8, 147, 198, 427, 504, 666, 786
HphI	GGTGA	7 cut(s)	62, 92, 463, 508, 589, 760, 873
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	4 cut(s)	182, 274, 552, 591
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	647
HpyAV	CCTTC	4 cut(s)	218, 254, 427, 894
HpyCH4III	ACNGT	3 cut(s)	469, 527, 816
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	14, 447, 862, 910
HpyF3I	CTNAG	2 cut(s)	452, 945
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	4 cut(s)	201, 507, 587, 752
Hsp92II	CATG	3 cut(s)	376, 403, 905
HspAI	GCGC	5 cut(s)	175, 201, 340, 348, 507
KasI	GGCGCC	2 cut(s)	200, 506
KspI	CCGCGG	2 cut(s)	166, 585
Kzo9I	GATC	5 cut(s)	4, 55, 178, 270, 554
LmnI	GCTCC	5 cut(s)	149, 308, 580, 660, 785
LweI	GCATC	2 cut(s)	856, 897
MaeI	CTAG	4 cut(s)	51, 252, 659, 830
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	5 cut(s)	469, 478, 514, 748, 816
MalI	GATC	5 cut(s)	6, 57, 180, 272, 556
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	5 cut(s)	4, 55, 178, 270, 554
MboII	GAAGA	4 cut(s)	50, 140, 879, 911
MfeI	CAATTG	1 cut(s)	935
MflI	RGATCY	2 cut(s)	4, 55
MhlI	GDGCHC	3 cut(s)	653, 807, 962
MluCI	AATT	4 cut(s)	121, 537, 925, 935
MluI	ACGCGT	1 cut(s)	354
Mly113I	GGCGCC	2 cut(s)	201, 507
MlyI	GAGTC	2 cut(s)	398, 588
MmeI	TCCRAC	1 cut(s)	112
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	746
MspA1I	CMGCKG	6 cut(s)	165, 299, 456, 462, 584, 944
MspI	CCGG	7 cut(s)	8, 147, 198, 427, 504, 666, 786
MspR9I	CCNGG	5 cut(s)	504, 608, 725, 762, 786
MunI	CAATTG	1 cut(s)	935
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	3 cut(s)	608, 725, 762
MvnI	CGCG	6 cut(s)	165, 177, 340, 342, 356, 584
NarI	GGCGCC	2 cut(s)	201, 507
NciI	CCSGG	2 cut(s)	504, 786
NdeII	GATC	5 cut(s)	4, 55, 178, 270, 554
NlaIII	CATG	3 cut(s)	376, 403, 905
NlaIV	GGNNCC	8 cut(s)	6, 202, 304, 466, 508, 651, 772, 781
NmuCI	GTSAC	4 cut(s)	469, 514, 748, 816
NspV	TTCGAA	1 cut(s)	534
OliI	CACNNNNGTG	1 cut(s)	746
PaqCI	CACCTGC	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	531
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	168, 789
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	2 cut(s)	398, 588
PluTI	GGCGCC	2 cut(s)	204, 510
PpsI	GAGTC	2 cut(s)	398, 588
Psp6I	CCWGG	3 cut(s)	606, 723, 760
PspEI	GGTNACC	1 cut(s)	514
PspGI	CCWGG	3 cut(s)	606, 723, 760
PspN4I	GGNNCC	8 cut(s)	6, 202, 304, 466, 508, 651, 772, 781
PspOMI	GGGCCC	1 cut(s)	649
PspPI	GGNCC	5 cut(s)	232, 649, 650, 668, 770
PsuI	RGATCY	2 cut(s)	4, 55
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	834
RsaNI	GTAC	1 cut(s)	833
RseI	CAYNNNNRTG	1 cut(s)	746
SacII	CCGCGG	2 cut(s)	166, 585
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	5 cut(s)	4, 55, 178, 270, 554
Sau96I	GGNCC	5 cut(s)	232, 649, 650, 668, 770
SchI	GAGTC	2 cut(s)	398, 588
ScrFI	CCNGG	5 cut(s)	504, 608, 725, 762, 786
SduI	GDGCHC	3 cut(s)	653, 807, 962
SfaNI	GCATC	2 cut(s)	856, 897
SfoI	GGCGCC	2 cut(s)	202, 508
Sfr303I	CCGCGG	2 cut(s)	166, 585
SfuI	TTCGAA	1 cut(s)	534
SgrBI	CCGCGG	2 cut(s)	166, 585
SinI	GGWCC	2 cut(s)	232, 770
SmiMI	CAYNNNNRTG	1 cut(s)	746
SpeI	ACTAGT	1 cut(s)	829
Sse9I	AATT	4 cut(s)	121, 537, 925, 935
SspDI	GGCGCC	2 cut(s)	200, 506
SspMI	CTAG	4 cut(s)	51, 252, 659, 830
StyD4I	CCNGG	5 cut(s)	502, 606, 723, 760, 784
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	3 cut(s)	469, 527, 816
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	534
TasI	AATT	4 cut(s)	121, 537, 925, 935
TatI	WGTACW	1 cut(s)	832
TauI	GCSGC	4 cut(s)	267, 459, 465, 587
TfiI	GAWTC	2 cut(s)	168, 789
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseFI	GTSAC	4 cut(s)	469, 514, 748, 816
Tsp45I	GTSAC	4 cut(s)	469, 514, 748, 816
TspDTI	ATGAA	2 cut(s)	50, 890
TspGWI	ACGGA	1 cut(s)	30
VpaK11BI	GGWCC	2 cut(s)	232, 770
XagI	CCTNNNNNAGG	1 cut(s)	728
XapI	RAATTY	3 cut(s)	121, 537, 925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	4 cut(s)	51, 252, 659, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.