pycom07g11310

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
11969784 .. 11970713
930 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g11310.1

Sequence Viewer

Length: 930 bp
ATGGATCCAATTGCAGCACGTGGACGTCCACTCCCACCTCCTTTTCTTTCAAGAGACCTTCACTTACATCCTCACCACCAATTCCCACAACTCCACCCCCACCACCTCAACCACCAAAACTCCGAGGACGAGCAAAACAGCAGCGGAATCAACCGCGGAATCAAACGTGATCGAGGCGGTGGAGATGAGAACTCCGCGGCCGCTACCACCTCTCTGGAGGGAAAAAATCAACTGGGGTACACCAGCGCCGGAGAGGCCGAGATCACCAGACGGCCCCGTGGCCGTCCAGCCGGCTCCAAAAACAAGGCCAAGCCCCCAATCATCATAACCCGAGACAGCGCCAATGTACTCCGATCCCACGTCATGGAAGTCGCCAACGGCTGCGACATCATGGACAGCGTCTCCACTTTCGCAAGGCGTAAACAGAGAGGGGTTTGCATTCTCAGCGGCAGTGGAACCGTCACTAATGTCACTCTAAGGCAGCCGGCCTCTCCGGGAGCTGTGGTCACTCTACACGGCAGGTTTGAAATTCTGTCCCTTTCTGGGTCCTTTTTGCCGCCCCCCGCCCCGCCTGTCACGTCAGGCTTGACCATCTACCTAGCCGGCGGACAAGGCCAAGTCGTTGGGGGCCCCGTGGTAGGGCCTCTATTGGCTTCAGGGCCGGTTGTTATCATGGCCGGCTCTTTTGGGAATGCGGCTTACGAGAGGCTGCCCTTGGAGGAGGAAGAGGAGCTCGCCGCGGCAGGGCAAGTACAAGGAAGTGGAATGTCCCTCGGATCTCCAGGGGTTGGCGGGCAAGAACATCAACAGCAGCAACAACAACTATTGCAAGATCCTAATGCACCATCGCTTTTTCATGGGATGCCACAAAGTCTACTAAACCAATTGCCTGCCGATGCATATTGGGGAACGGCACGACCTCCTTATTGA

Protein Analysis

310

Amino Acids

32.63

Weight (kDa)

7.22

Isoelectric Point (pI)

53.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 118 - 229 2.4e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45430 AT3G60870
fragaria_vesca FvH4_7g12040
malus_domestica MD02G1201800.v1.1
prunus_persica Prupe.2G147000_v2.0.a1
pyrus_communis pycom07g11310
rosa_chinensis RchiOBHm_Chr1g0350751
rosa_laevigata RLG00000028456
rosa_multiflora Rmu_sc0007810.1_g000008
rosa_roxburghii Rroxscaffold_4G00304520
rosa_rugosa Rorug01G0213900
rosa_samantha Rh1AG228000 Rh1BG197500 Rh1CG213000 Rh1DG225400
rosa_wichuraiana Rw1G019770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 510
AccB7I CCANNNNNTGG 2 cut(s) 364, 788
AccI GTMKAC 1 cut(s) 874
AccII CGCG 3 cut(s) 156, 197, 740
AclWI GGATC 4 cut(s) 12, 348, 784, 827
AcoI YGGCCR 3 cut(s) 198, 280, 675
AcsI RAATTY 1 cut(s) 528
AcuI CTGAAG 1 cut(s) 639
AcvI CACGTG 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 3 cut(s) 239, 348, 753
AfiI CCNNNNNNNGG 6 cut(s) 364, 543, 638, 639, 744, 788
AgsI TTSAA 2 cut(s) 51, 527
AjiI CACGTC 2 cut(s) 361, 579
AjnI CCWGG 1 cut(s) 781
AluBI AGCT 2 cut(s) 500, 733
AluI AGCT 2 cut(s) 500, 733
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 3 cut(s) 48, 327, 406
AlwI GGATC 4 cut(s) 12, 348, 784, 827
Ama87I CYCGRG 1 cut(s) 330
ApaI GGGCCC 1 cut(s) 632
ApeKI GCWGC 6 cut(s) 14, 141, 381, 481, 709, 811
ApoI RAATTY 1 cut(s) 528
AspLEI GCGC 2 cut(s) 248, 341
AspS9I GGNCC 6 cut(s) 273, 546, 628, 629, 641, 659
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 2 cut(s) 65, 256
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 1 cut(s) 546
BaeGI GKGCMC 1 cut(s) 632
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 632, 735
BbrPI CACGTG 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 6 cut(s) 26, 153, 368, 493, 696, 823
BccI CCATC 2 cut(s) 599, 853
BceAI ACGGC 5 cut(s) 267, 287, 394, 532, 927
BciT130I CCWGG 1 cut(s) 783
BcnI CCSGG 1 cut(s) 495
BcoDI GTCTC 3 cut(s) 48, 327, 406
BfaI CTAG 1 cut(s) 599
BfoI RGCGCY 2 cut(s) 249, 342
BfuAI ACCTGC 1 cut(s) 510
BglI GCCNNNNNGGC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 495, 783
Bme18I GGWCC 1 cut(s) 546
BmeT110I CYCGRG 1 cut(s) 330
BmgBI CACGTC 2 cut(s) 361, 579
BmgT120I GGNCC 6 cut(s) 273, 546, 628, 629, 641, 659
BmiI GGNNCC 8 cut(s) 6, 275, 295, 457, 547, 629, 630, 631
BmrFI CCNGG 2 cut(s) 495, 783
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 852, 886
BmuI ACTGGG 1 cut(s) 242
BpmI CTGGAG 2 cut(s) 236, 765
BpuMI CCSGG 1 cut(s) 495
BsaAI YACGTR 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 25
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 9 cut(s) 123, 154, 195, 277, 633, 714, 738, 772, 782
BsaXI ACNNNNNCTCC 8 cut(s) 15, 45, 104, 134, 386, 416, 489, 519
Bsc4I CCNNNNNNNGG 6 cut(s) 364, 543, 638, 639, 744, 788
Bse118I RCCGGY 5 cut(s) 290, 484, 602, 661, 677
Bse1I ACTGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 9 cut(s) 123, 154, 195, 277, 633, 714, 738, 772, 782
BseGI GGATG 2 cut(s) 67, 867
BseLI CCNNNNNNNGG 6 cut(s) 364, 543, 638, 639, 744, 788
BseMII CTCAG 1 cut(s) 457
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 2 cut(s) 734, 743
BseSI GKGCMC 1 cut(s) 632
BseX3I CGGCCG 1 cut(s) 198
BseXI GCAGC 6 cut(s) 26, 153, 368, 493, 696, 823
Bsh1236I CGCG 3 cut(s) 156, 197, 740
Bsh1285I CGRYCG 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 735
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 7 cut(s) 249, 291, 485, 494, 603, 662, 678
BslFI GGGAC 2 cut(s) 520, 754
BslI CCNNNNNNNGG 6 cut(s) 364, 543, 638, 639, 744, 788
BsmAI GTCTC 3 cut(s) 48, 327, 406
BsmBI CGTCTC 1 cut(s) 406
BsmFI GGGAC 2 cut(s) 520, 754
BsmI GAATGC 2 cut(s) 438, 697
Bso31I GGTCTC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 330
Bsp120I GGGCCC 1 cut(s) 628
Bsp1286I GDGCHC 2 cut(s) 632, 735
Bsp143I GATC 6 cut(s) 4, 169, 261, 353, 776, 832
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 3 cut(s) 156, 197, 740
BspLI GGNNCC 8 cut(s) 6, 275, 295, 457, 547, 629, 630, 631
BspMI ACCTGC 1 cut(s) 510
BspPI GGATC 4 cut(s) 12, 348, 784, 827
BspTNI GGTCTC 1 cut(s) 48
BsrFI RCCGGY 5 cut(s) 290, 484, 602, 661, 677
BsrI ACTGG 1 cut(s) 237
BssAI RCCGGY 5 cut(s) 290, 484, 602, 661, 677
BssECI CCNNGG 9 cut(s) 123, 154, 195, 277, 633, 714, 738, 772, 782
BssMI GATC 6 cut(s) 4, 169, 261, 353, 776, 832
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 720
BstACI GRCGYC 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 7 cut(s) 292, 486, 604, 679, 735, 794, 891
BstDEI CTNAG 2 cut(s) 443, 476
BstDSI CCRYGG 5 cut(s) 154, 195, 277, 633, 738
BstF5I GGATG 2 cut(s) 67, 867
BstFNI CGCG 3 cut(s) 156, 197, 740
BstH2I RGCGCY 2 cut(s) 249, 342
BstHHI GCGC 2 cut(s) 248, 341
BstKTI GATC 6 cut(s) 7, 172, 264, 356, 779, 835
BstMAI GTCTC 3 cut(s) 48, 327, 406
BstMBI GATC 6 cut(s) 4, 169, 261, 353, 776, 832
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 3 cut(s) 254, 444, 612
BstNI CCWGG 1 cut(s) 783
BstSCI CCNGG 2 cut(s) 493, 781
BstSLI GKGCMC 1 cut(s) 632
BstUI CGCG 3 cut(s) 156, 197, 740
BstV1I GCAGC 6 cut(s) 26, 153, 368, 493, 696, 823
BstX2I RGATCY 3 cut(s) 4, 776, 832
BstXI CCANNNNNNTGG 2 cut(s) 214, 623
BstYI RGATCY 3 cut(s) 4, 776, 832
BstZI CGGCCG 1 cut(s) 198
BtgI CCRYGG 5 cut(s) 154, 195, 277, 633, 738
BtgZI GCGATG 1 cut(s) 831
BtrI CACGTC 2 cut(s) 361, 579
BtsCI GGATG 2 cut(s) 67, 867
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 457
BveI ACCTGC 1 cut(s) 510
Cac8I GCNNGC 7 cut(s) 292, 486, 604, 679, 735, 794, 891
CciNI GCGGCCGC 1 cut(s) 198
CfoI GCGC 2 cut(s) 248, 341
Cfr10I RCCGGY 5 cut(s) 290, 484, 602, 661, 677
Cfr13I GGNCC 6 cut(s) 273, 546, 628, 629, 641, 659
Cfr42I CCGCGG 3 cut(s) 157, 198, 741
CseI GACGC 1 cut(s) 388
Csp6I GTAC 3 cut(s) 238, 347, 752
CviAII CATG 4 cut(s) 364, 391, 673, 857
CviQI GTAC 3 cut(s) 238, 347, 752
DdeI CTNAG 2 cut(s) 443, 476
DpnI GATC 6 cut(s) 6, 171, 263, 355, 778, 834
DpnII GATC 6 cut(s) 4, 169, 261, 353, 776, 832
EaeI YGGCCR 3 cut(s) 198, 280, 675
EagI CGGCCG 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
EciI GGCGGA 1 cut(s) 621
Ecl136II GAGCTC 1 cut(s) 733
EclXI CGGCCG 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 2 cut(s) 632, 735
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 546
Eco52I CGGCCG 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 639
Eco72I CACGTG 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 733
EcoO109I RGGNCCY 4 cut(s) 546, 628, 629, 641
EcoRII CCWGG 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 714
EcoT22I ATGCAT 1 cut(s) 901
EcoT38I GRGCYC 2 cut(s) 632, 735
ErhI CCWWGG 1 cut(s) 714
Esp3I CGTCTC 1 cut(s) 406
FaeI CATG 4 cut(s) 367, 394, 676, 860
FaiI YATR 6 cut(s) 326, 365, 392, 674, 858, 901
FaqI GGGAC 2 cut(s) 520, 754
FatI CATG 4 cut(s) 363, 390, 672, 856
FauI CCCGC 3 cut(s) 571, 576, 785
FblI GTMKAC 1 cut(s) 874
FokI GGATG 2 cut(s) 54, 874
FriOI GRGCYC 2 cut(s) 632, 735
FspBI CTAG 1 cut(s) 599
GlaI GCGC 2 cut(s) 247, 340
GsuI CTGGAG 2 cut(s) 236, 765
HaeII RGCGCY 2 cut(s) 249, 342
HapII CCGG 7 cut(s) 249, 291, 485, 494, 603, 662, 678
HgaI GACGC 1 cut(s) 388
HhaI GCGC 2 cut(s) 248, 341
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 4 cut(s) 367, 394, 676, 860
Hin6I GCGC 2 cut(s) 246, 339
HinP1I GCGC 2 cut(s) 246, 339
HinfI GANTC 2 cut(s) 147, 159
HpaII CCGG 7 cut(s) 249, 291, 485, 494, 603, 662, 678
HphI GGTGA 2 cut(s) 65, 256
Hpy166II GTNNAC 5 cut(s) 23, 29, 240, 422, 875
Hpy188I TCNGA 3 cut(s) 124, 353, 776
Hpy188III TCNNGA 2 cut(s) 51, 215
Hpy8I GTNNAC 5 cut(s) 23, 29, 240, 422, 875
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 5 cut(s) 19, 25, 166, 360, 578
HpyCH4V TGCA 5 cut(s) 14, 438, 829, 842, 899
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 444, 612
HpyF3I CTNAG 2 cut(s) 443, 476
HpySE526I ACGT 5 cut(s) 19, 25, 166, 360, 578
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 4 cut(s) 367, 394, 676, 860
HspAI GCGC 2 cut(s) 246, 339
KroI GCCGGC 4 cut(s) 290, 484, 602, 677
KroNI GCCGGC 4 cut(s) 292, 486, 604, 679
KspI CCGCGG 3 cut(s) 157, 198, 741
Kzo9I GATC 6 cut(s) 4, 169, 261, 353, 776, 832
LmnI GCTCC 3 cut(s) 299, 497, 730
Lsp1109I GCAGC 6 cut(s) 26, 153, 368, 493, 696, 823
LweI GCATC 2 cut(s) 852, 886
MaeI CTAG 1 cut(s) 599
MaeII ACGT 5 cut(s) 19, 25, 166, 360, 578
MaeIII GTNAC 4 cut(s) 460, 469, 505, 574
MalI GATC 6 cut(s) 6, 171, 263, 355, 778, 834
MboI GATC 6 cut(s) 4, 169, 261, 353, 776, 832
MboII GAAGA 1 cut(s) 737
MfeI CAATTG 2 cut(s) 9, 884
MflI RGATCY 3 cut(s) 4, 776, 832
MhlI GDGCHC 2 cut(s) 632, 735
MluCI AATT 4 cut(s) 9, 80, 528, 884
Mph1103I ATGCAT 1 cut(s) 901
MroNI GCCGGC 4 cut(s) 290, 484, 602, 677
MspA1I CMGCKG 5 cut(s) 144, 156, 197, 447, 740
MspI CCGG 7 cut(s) 249, 291, 485, 494, 603, 662, 678
MspR9I CCNGG 2 cut(s) 495, 783
MunI CAATTG 2 cut(s) 9, 884
Mva1269I GAATGC 2 cut(s) 438, 697
MvaI CCWGG 1 cut(s) 783
MvnI CGCG 3 cut(s) 156, 197, 740
MwoI GCNNNNNNNGC 3 cut(s) 254, 444, 612
NaeI GCCGGC 4 cut(s) 292, 486, 604, 679
NciI CCSGG 1 cut(s) 495
NdeII GATC 6 cut(s) 4, 169, 261, 353, 776, 832
NgoMIV GCCGGC 4 cut(s) 290, 484, 602, 677
NlaIII CATG 4 cut(s) 367, 394, 676, 860
NlaIV GGNNCC 8 cut(s) 6, 275, 295, 457, 547, 629, 630, 631
NmeAIII GCCGAG 1 cut(s) 283
NmuCI GTSAC 4 cut(s) 460, 469, 505, 574
NotI GCGGCCGC 1 cut(s) 198
NsiI ATGCAT 1 cut(s) 901
PctI GAATGC 2 cut(s) 438, 697
PdiI GCCGGC 4 cut(s) 292, 486, 604, 679
PfeI GAWTC 2 cut(s) 147, 159
PflFI GACNNNGTC 1 cut(s) 398
PflMI CCANNNNNTGG 2 cut(s) 364, 788
PfoI TCCNGGA 1 cut(s) 493
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 735
Psp5II RGGWCCY 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 781
PspCI CACGTG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 8 cut(s) 6, 275, 295, 457, 547, 629, 630, 631
PspOMI GGGCCC 1 cut(s) 628
PspPI GGNCC 6 cut(s) 273, 546, 628, 629, 641, 659
PspPPI RGGWCCY 1 cut(s) 546
PsuI RGATCY 3 cut(s) 4, 776, 832
PsyI GACNNNGTC 1 cut(s) 398
RsaI GTAC 3 cut(s) 239, 348, 753
RsaNI GTAC 3 cut(s) 238, 347, 752
SacI GAGCTC 1 cut(s) 735
SacII CCGCGG 3 cut(s) 157, 198, 741
Sau3AI GATC 6 cut(s) 4, 169, 261, 353, 776, 832
Sau96I GGNCC 6 cut(s) 273, 546, 628, 629, 641, 659
ScrFI CCNGG 2 cut(s) 495, 783
SduI GDGCHC 2 cut(s) 632, 735
SfaNI GCATC 2 cut(s) 852, 886
Sfr303I CCGCGG 3 cut(s) 157, 198, 741
SgrBI CCGCGG 3 cut(s) 157, 198, 741
SinI GGWCC 1 cut(s) 546
Sse9I AATT 4 cut(s) 9, 80, 528, 884
SspMI CTAG 1 cut(s) 599
SstI GAGCTC 1 cut(s) 735
StyD4I CCNGG 2 cut(s) 493, 781
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 5 cut(s) 22, 28, 169, 363, 581
TaqI TCGA 1 cut(s) 172
TasI AATT 4 cut(s) 9, 80, 528, 884
TatI WGTACW 2 cut(s) 346, 751
TauI GCSGC 7 cut(s) 200, 203, 450, 559, 698, 740, 743
TfiI GAWTC 2 cut(s) 147, 159
TscAI CASTG 1 cut(s) 457
TseFI GTSAC 4 cut(s) 460, 469, 505, 574
TseI GCWGC 6 cut(s) 14, 141, 381, 481, 709, 811
Tsp45I GTSAC 4 cut(s) 460, 469, 505, 574
TspDTI ATGAA 1 cut(s) 845
TspRI CASTG 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 398
Van91I CCANNNNNTGG 2 cut(s) 364, 788
VpaK11BI GGWCC 1 cut(s) 546
XapI RAATTY 1 cut(s) 528
XmiI GTMKAC 1 cut(s) 874
XspI CTAG 1 cut(s) 599
ZraI GACGTC 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.