FvH4_7g12040

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
10953211 .. 10955636
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12040.t1

Sequence Viewer

Length: 978 bp
ATGGATCCGGTTGCAGCACACGGCCGACCACTTCCGCCTCCGTTTTTAACAAGAGATCTTCATCTAAACCACCCTCATCATCAGTTCCAACACCACCCTCACCTCCTCCACCACCAGAATTCTGAAGACGAGCAGAACAGCTCCGGCGGCCTAAACCGCCACCGCGGAATGAAACGCGACCGGGACGACAACACCTCCGGCGGCAACACGCCGAACTCGATGGATGGCAATAAGGATCTGCTCGGTGGGTCCAACAGCGGAGAAGGCGGCGAGATCACGAGACGACCTCGTGGCCGACCGGCTGGCTCTAAGAACAAGGCCAAACCCCCCATCATCATCACGCGTGACAGCGCCAACGCGCTGCGCTCTCACGTCATGGAGGTCGCCAACGGCTGCGACATCATGGACTCTGTCTCTACCTTCGCACGCCGGAGACAGCGAGGCGTTTGCATTCTCAGCGGCAGCGGCACCGTCACAAATGTAACCCTCCGCCAGCCAGCCTCCCCTGGGGCTGTGGTCACCTTACACGGCAGGTTCGAAATTCTTTCCCTTTCGGGATCATTCCTGCCCCCACCTGCCCCGCCTGCCGCGTCAGGGCTCACCATTTACCTGGCTGGCGGGCAGGGACAGGTAGTCGGGGGCAGCGTCGTAGGCCCGCTACTAGCTTCGGGCCCTGTGGTCATTATGGCAGCGAGTTTCGGTAATGCTGCTTACGAGAGACTGCCCCTCGAGGAGGAGGACGCCACGGCAGTGACGCCTATGCCGGGGAGCGGGCCCCTTGGCTCCCCCGGAATTGGCGGAGGAGAGCAGCAGCAACAGTCGCAAGTTCAACAAGTTCAGCAGCAGCAGCAGATGTTGCAAGATGCTAATAACTCATCACCTCCTCCCTCACTCTTTCATGGGATGCAGCAAAATCTTCTAAATTCAGTTCAATTGCCTTCTGAGGCGTACTGGGGCACAGCTCGTCCTCCTTATTGA

Protein Analysis

326

Amino Acids

34.38

Weight (kDa)

7.27

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 122 - 233 1.8e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45430 AT3G60870
fragaria_vesca FvH4_7g12040
malus_domestica MD02G1201800.v1.1
prunus_persica Prupe.2G147000_v2.0.a1
pyrus_communis pycom07g11310
rosa_chinensis RchiOBHm_Chr1g0350751
rosa_laevigata RLG00000028456
rosa_multiflora Rmu_sc0007810.1_g000008
rosa_roxburghii Rroxscaffold_4G00304520
rosa_rugosa Rorug01G0213900
rosa_samantha Rh1AG228000 Rh1BG197500 Rh1CG213000 Rh1DG225400
rosa_wichuraiana Rw1G019770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
AbsI CCTCGAGG 1 cut(s) 728
Acc36I ACCTGC 2 cut(s) 522, 583
AccB1I GGYRCC 1 cut(s) 467
AccBSI CCGCTC 1 cut(s) 771
AccII CGCG 5 cut(s) 165, 177, 343, 359, 590
AclWI GGATC 3 cut(s) 12, 243, 565
AcoI YGGCCR 2 cut(s) 22, 292
AcsI RAATTY 3 cut(s) 118, 540, 922
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 2 cut(s) 741, 755
AfaI GTAC 1 cut(s) 950
AfiI CCNNNNNNNGG 6 cut(s) 507, 594, 733, 764, 770, 794
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 2 cut(s) 830, 932
AhdI GACNNNNNGTC 1 cut(s) 632
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 2 cut(s) 505, 609
AleI CACNNNNGTG 1 cut(s) 749
AluBI AGCT 3 cut(s) 141, 665, 962
AluI AGCT 3 cut(s) 141, 665, 962
Alw26I GTCTC 4 cut(s) 274, 418, 427, 712
AlwI GGATC 3 cut(s) 12, 243, 565
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 7 cut(s) 22, 148, 292, 318, 652, 670, 773
ApaI GGGCCC 2 cut(s) 674, 777
ApoI RAATTY 3 cut(s) 118, 540, 922
AspLEI GCGC 3 cut(s) 353, 361, 366
AspS9I GGNCC 6 cut(s) 249, 653, 670, 671, 773, 774
AsuC2I CCSGG 3 cut(s) 182, 765, 789
AsuHPI GGTGA 4 cut(s) 92, 511, 592, 870
AsuII TTCGAA 1 cut(s) 537
AvaI CYCGRG 1 cut(s) 728
AvaII GGWCC 1 cut(s) 249
BaeGI GKGCMC 3 cut(s) 674, 777, 959
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 467
BanII GRGCYC 3 cut(s) 600, 674, 777
BauI CACGAG 2 cut(s) 277, 288
BbsI GAAGAC 1 cut(s) 132
BccI CCATC 3 cut(s) 214, 218, 338
BceAI ACGGC 4 cut(s) 37, 406, 544, 762
BcgI CGANNNNNNTGC 2 cut(s) 429, 463
BciT130I CCWGG 2 cut(s) 507, 611
BcnI CCSGG 3 cut(s) 182, 765, 789
BcoDI GTCTC 4 cut(s) 274, 418, 427, 712
BfaI CTAG 1 cut(s) 662
BfoI RGCGCY 1 cut(s) 354
BfuAI ACCTGC 2 cut(s) 522, 583
BglII AGATCT 1 cut(s) 55
Bme1390I CCNGG 5 cut(s) 182, 507, 611, 765, 789
Bme18I GGWCC 1 cut(s) 249
BmeRI GACNNNNNGTC 1 cut(s) 632
BmeT110I CYCGRG 1 cut(s) 728
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 6 cut(s) 249, 653, 670, 671, 773, 774
BmiI GGNNCC 7 cut(s) 6, 250, 469, 672, 775, 776, 784
BmrFI CCNGG 5 cut(s) 182, 507, 611, 765, 789
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 2 cut(s) 853, 894
BmuI ACTGGG 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 271, 303
Bpu14I TTCGAA 1 cut(s) 537
BpuMI CCSGG 3 cut(s) 182, 765, 789
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 2 cut(s) 741, 755
BsaJI CCNNGG 7 cut(s) 163, 505, 506, 744, 764, 778, 787
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 6 cut(s) 507, 594, 733, 764, 770, 794
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 956
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 2 cut(s) 507, 611
BseDI CCNNGG 7 cut(s) 163, 505, 506, 744, 764, 778, 787
BseGI GGATG 2 cut(s) 229, 909
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 6 cut(s) 507, 594, 733, 764, 770, 794
BseMII CTCAG 2 cut(s) 469, 933
BseNI ACTGG 1 cut(s) 956
BseRI GAGGAG 5 cut(s) 95, 746, 749, 816, 873
BseSI GKGCMC 3 cut(s) 674, 777, 959
BseX3I CGGCCG 1 cut(s) 22
Bsh1236I CGCG 5 cut(s) 165, 177, 343, 359, 590
Bsh1285I CGRYCG 3 cut(s) 25, 181, 299
BshFI GGCC 7 cut(s) 24, 150, 294, 320, 654, 672, 775
BshNI GGYRCC 1 cut(s) 467
BsiEI CGRYCG 3 cut(s) 25, 181, 299
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 8 cut(s) 8, 144, 181, 198, 299, 430, 764, 789
BslFI GGGAC 2 cut(s) 197, 639
BslI CCNNNNNNNGG 6 cut(s) 507, 594, 733, 764, 770, 794
BsmAI GTCTC 4 cut(s) 274, 418, 427, 712
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 2 cut(s) 197, 639
BsmI GAATGC 1 cut(s) 450
BsnI GGCC 7 cut(s) 24, 150, 294, 320, 654, 672, 775
BsoBI CYCGRG 1 cut(s) 728
Bsp119I TTCGAA 1 cut(s) 537
Bsp120I GGGCCC 2 cut(s) 670, 773
Bsp1286I GDGCHC 4 cut(s) 600, 674, 777, 959
Bsp143I GATC 5 cut(s) 4, 55, 235, 273, 557
BspANI GGCC 7 cut(s) 24, 150, 294, 320, 654, 672, 775
BspCNI CTCAG 2 cut(s) 468, 934
BspFNI CGCG 5 cut(s) 165, 177, 343, 359, 590
BspLI GGNNCC 7 cut(s) 6, 250, 469, 672, 775, 776, 784
BspMI ACCTGC 2 cut(s) 522, 583
BspPI GGATC 3 cut(s) 12, 243, 565
BspT104I TTCGAA 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 467
BsrBI CCGCTC 1 cut(s) 771
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 956
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 7 cut(s) 163, 505, 506, 744, 764, 778, 787
BssMI GATC 5 cut(s) 4, 55, 235, 273, 557
BssNI GRCGYC 2 cut(s) 741, 755
BssSI CACGAG 2 cut(s) 277, 288
BssT1I CCWWGG 1 cut(s) 778
Bst2BI CACGAG 2 cut(s) 277, 288
Bst2UI CCWGG 2 cut(s) 507, 611
Bst4CI ACNGT 2 cut(s) 472, 819
BstACI GRCGYC 2 cut(s) 741, 755
BstAPI GCANNNNNTGC 1 cut(s) 856
BstBI TTCGAA 1 cut(s) 537
BstC8I GCNNGC 9 cut(s) 304, 427, 494, 498, 585, 616, 620, 656, 773
BstDEI CTNAG 3 cut(s) 309, 455, 942
BstDSI CCRYGG 2 cut(s) 163, 744
BstEII GGTNACC 1 cut(s) 517
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 2 cut(s) 229, 909
BstFNI CGCG 5 cut(s) 165, 177, 343, 359, 590
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 3 cut(s) 353, 361, 366
BstKTI GATC 5 cut(s) 7, 58, 238, 276, 560
BstMAI GTCTC 4 cut(s) 274, 418, 427, 712
BstMBI GATC 5 cut(s) 4, 55, 235, 273, 557
BstMCI CGRYCG 3 cut(s) 25, 181, 299
BstNI CCWGG 2 cut(s) 507, 611
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 5 cut(s) 180, 505, 609, 763, 787
BstSLI GKGCMC 3 cut(s) 674, 777, 959
BstUI CGCG 5 cut(s) 165, 177, 343, 359, 590
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 3 cut(s) 4, 55, 235
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 3 cut(s) 4, 55, 235
BstZI CGGCCG 1 cut(s) 22
BsuRI GGCC 7 cut(s) 24, 150, 294, 320, 654, 672, 775
BtgI CCRYGG 2 cut(s) 163, 744
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 2 cut(s) 229, 909
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 756
BveI ACCTGC 2 cut(s) 522, 583
Cac8I GCNNGC 9 cut(s) 304, 427, 494, 498, 585, 616, 620, 656, 773
CfoI GCGC 3 cut(s) 353, 361, 366
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 6 cut(s) 249, 653, 670, 671, 773, 774
Cfr42I CCGCGG 1 cut(s) 166
CseI GACGC 4 cut(s) 579, 634, 749, 763
Csp6I GTAC 1 cut(s) 949
CviAII CATG 3 cut(s) 376, 403, 899
CviQI GTAC 1 cut(s) 949
DdeI CTNAG 3 cut(s) 309, 455, 942
DpnI GATC 5 cut(s) 6, 57, 237, 275, 559
DpnII GATC 5 cut(s) 4, 55, 235, 273, 557
DriI GACNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 2 cut(s) 22, 292
EagI CGGCCG 1 cut(s) 22
Eam1105I GACNNNNNGTC 1 cut(s) 632
EciI GGCGGA 3 cut(s) 24, 479, 813
EclXI CGGCCG 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 778
Eco24I GRGCYC 3 cut(s) 600, 674, 777
Eco47I GGWCC 1 cut(s) 249
Eco52I CGGCCG 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 728
Eco91I GGTNACC 1 cut(s) 517
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoO109I RGGNCCY 2 cut(s) 671, 774
EcoO65I GGTNACC 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 505, 609
EcoT14I CCWWGG 1 cut(s) 778
EcoT38I GRGCYC 3 cut(s) 600, 674, 777
ErhI CCWWGG 1 cut(s) 778
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 3 cut(s) 379, 406, 902
FaiI YATR 5 cut(s) 377, 404, 686, 761, 900
FaqI GGGAC 2 cut(s) 197, 639
FatI CATG 3 cut(s) 375, 402, 898
FauI CCCGC 4 cut(s) 588, 611, 663, 764
FokI GGATG 2 cut(s) 236, 916
FriOI GRGCYC 3 cut(s) 600, 674, 777
FspBI CTAG 1 cut(s) 662
GlaI GCGC 3 cut(s) 352, 360, 365
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 7 cut(s) 24, 150, 294, 320, 654, 672, 775
HapII CCGG 8 cut(s) 8, 144, 181, 198, 299, 430, 764, 789
HgaI GACGC 4 cut(s) 579, 634, 749, 763
HhaI GCGC 3 cut(s) 353, 361, 366
Hin1I GRCGYC 2 cut(s) 741, 755
Hin1II CATG 3 cut(s) 379, 406, 902
Hin6I GCGC 3 cut(s) 351, 359, 364
HinP1I GCGC 3 cut(s) 351, 359, 364
HinfI GANTC 1 cut(s) 407
HpaII CCGG 8 cut(s) 8, 144, 181, 198, 299, 430, 764, 789
HphI GGTGA 4 cut(s) 92, 511, 592, 870
Hpy188I TCNGA 2 cut(s) 124, 943
Hpy188III TCNNGA 2 cut(s) 277, 555
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 3 cut(s) 257, 430, 948
HpyCH4III ACNGT 2 cut(s) 472, 819
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 14, 450, 859, 907
HpyF3I CTNAG 3 cut(s) 309, 455, 942
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 2 cut(s) 741, 755
Hsp92II CATG 3 cut(s) 379, 406, 902
HspAI GCGC 3 cut(s) 351, 359, 364
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 5 cut(s) 4, 55, 235, 273, 557
LmnI GCTCC 3 cut(s) 146, 768, 788
LweI GCATC 2 cut(s) 853, 894
MaeI CTAG 1 cut(s) 662
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 5 cut(s) 344, 472, 481, 517, 751
MalI GATC 5 cut(s) 6, 57, 237, 275, 559
MbiI CCGCTC 1 cut(s) 771
MboI GATC 5 cut(s) 4, 55, 235, 273, 557
MboII GAAGA 3 cut(s) 50, 137, 908
MfeI CAATTG 1 cut(s) 932
MflI RGATCY 3 cut(s) 4, 55, 235
MhlI GDGCHC 4 cut(s) 600, 674, 777, 959
MluCI AATT 5 cut(s) 118, 540, 792, 922, 932
MluI ACGCGT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 112, 276
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 749
MspA1I CMGCKG 4 cut(s) 165, 258, 459, 465
MspI CCGG 8 cut(s) 8, 144, 181, 198, 299, 430, 764, 789
MspR9I CCNGG 5 cut(s) 182, 507, 611, 765, 789
MteI GCGCNGCGC 1 cut(s) 362
MunI CAATTG 1 cut(s) 932
Mva1269I GAATGC 1 cut(s) 450
MvaI CCWGG 2 cut(s) 507, 611
MvnI CGCG 5 cut(s) 165, 177, 343, 359, 590
NciI CCSGG 3 cut(s) 182, 765, 789
NdeII GATC 5 cut(s) 4, 55, 235, 273, 557
NlaIII CATG 3 cut(s) 379, 406, 902
NlaIV GGNNCC 7 cut(s) 6, 250, 469, 672, 775, 776, 784
NmuCI GTSAC 4 cut(s) 344, 472, 517, 751
NspV TTCGAA 1 cut(s) 537
OliI CACNNNNGTG 1 cut(s) 749
PaeR7I CTCGAG 1 cut(s) 728
PaqCI CACCTGC 1 cut(s) 583
PasI CCCWGGG 1 cut(s) 506
PcsI WCGNNNNNNNCGW 3 cut(s) 215, 534, 642
PctI GAATGC 1 cut(s) 450
PflFI GACNNNGTC 1 cut(s) 410
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 505, 609
PspEI GGTNACC 1 cut(s) 517
PspGI CCWGG 2 cut(s) 505, 609
PspN4I GGNNCC 7 cut(s) 6, 250, 469, 672, 775, 776, 784
PspOMI GGGCCC 2 cut(s) 670, 773
PspPI GGNCC 6 cut(s) 249, 653, 670, 671, 773, 774
PspXI VCTCGAGB 1 cut(s) 728
PsuI RGATCY 3 cut(s) 4, 55, 235
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 1 cut(s) 950
RsaNI GTAC 1 cut(s) 949
RseI CAYNNNNRTG 1 cut(s) 749
SacII CCGCGG 1 cut(s) 166
SaqAI TTAA 1 cut(s) 47
Sau3AI GATC 5 cut(s) 4, 55, 235, 273, 557
Sau96I GGNCC 6 cut(s) 249, 653, 670, 671, 773, 774
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 5 cut(s) 182, 507, 611, 765, 789
SduI GDGCHC 4 cut(s) 600, 674, 777, 959
SfaNI GCATC 2 cut(s) 853, 894
Sfr274I CTCGAG 1 cut(s) 728
Sfr303I CCGCGG 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 537
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 1 cut(s) 249
SlaI CTCGAG 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 5 cut(s) 118, 540, 792, 922, 932
SspMI CTAG 1 cut(s) 662
StyD4I CCNGG 5 cut(s) 180, 505, 609, 763, 787
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 2 cut(s) 472, 819
TaiI ACGT 1 cut(s) 375
TaqI TCGA 3 cut(s) 218, 537, 729
TasI AATT 5 cut(s) 118, 540, 792, 922, 932
TauI GCSGC 6 cut(s) 150, 204, 270, 462, 468, 590
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 756
TseFI GTSAC 4 cut(s) 344, 472, 517, 751
Tsp45I GTSAC 4 cut(s) 344, 472, 517, 751
TspDTI ATGAA 3 cut(s) 50, 185, 887
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 756
Tth111I GACNNNGTC 1 cut(s) 410
VpaK11BI GGWCC 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 3 cut(s) 118, 540, 922
XhoI CTCGAG 1 cut(s) 728
XspI CTAG 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.