Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014938

Physical Location & Seq

Genomic Coordinates Forward (+)

22492811 .. 22494253

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATGAGGTATCTCGTTCTCATACACCGCAATTTCTATCAAGTGATCATCAGCACTATCACCATCAAAACGCTGGACGACAAAAACGCGGCAGAGAAGAAGAAGGAGTTGAACCCAACAATATAGGGGAAGACCTAGCCACCTTTCCTTCCGGAGAAGAGAATATCAAGAAGAGAAGGCCACGTGGCAGACCTGCTGGTTCCAAGAACAAACCCAAAGCACCAATCATAGTCACTCGCGACTCCGCGAACGCCTTCAGATGTCACGTCATGGAGATAACCAACGCCTGCGATGTAATGGAAAGCCTAGCCGTCTTCGCTAGACGCCGTCAGCGTGGCGTTTGCGTCTTGACCGGAAACGGGGCCGTTACAAACGTCACCGTTAGACAACCTGGCGGAGGCGTCGTCAGTTTACACGGACGGTTTGAGATTCTTTCTCTCTCGGGTTCGTTTCTTCCTCCACCGGCACCACCAGCTGCGTCTGGTTTAAAGGTTTACTTAGCCGGTGGTCAAGGTCAAGTGATCGGAGGCAGTGTGGTGGGACCGCTTACGGCATCAAGTCCGGTGGTCGTTATGGCAGCTTCATTTGGAAACGCATCTTACGAGAGGCTGCCACTAGAGGAGGAGGAGGAAACTGAAAGAGAAATAGATGGAAACGCGGCTAGGGCGATTGGAACGCAAACGCAGAAACAGTTAATGCAAGATGCGACATCGTTTATTGGGTCGCCGTCGAATTTAATTAACTCTGTTTCGTTGCCAGGTGAAGCTTATTGGGGAACGCAACGACCGTCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

265

Amino Acids

28.41

Weight (kDa)

7.8

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	87 - 196	5.8e-22	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45430 AT3G60870
fragaria_vesca	FvH4_7g12040
malus_domestica	MD02G1201800.v1.1
prunus_persica	Prupe.2G147000_v2.0.a1
pyrus_communis	pycom07g11310
rosa_chinensis	RchiOBHm_Chr1g0350751
rosa_laevigata	RLG00000028456
rosa_multiflora	Rmu_sc0007810.1_g000008
rosa_roxburghii	Rroxscaffold_4G00304520
rosa_rugosa	Rorug01G0213900
rosa_samantha	Rh1AG228000 Rh1BG197500 Rh1CG213000 Rh1DG225400
rosa_wichuraiana	Rw1G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	466
AccII	CGCG	4 cut(s)	90, 240, 248, 659
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	6 cut(s)	29, 90, 246, 396, 545, 659
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	241
AcvI	CACGTG	1 cut(s)	185
AcyI	GRCGYC	2 cut(s)	325, 402
AfiI	CCNNNNNNNGG	2 cut(s)	360, 398
AgsI	TTSAA	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	2 cut(s)	391, 757
AluBI	AGCT	3 cut(s)	476, 581, 767
AluI	AGCT	3 cut(s)	476, 581, 767
Ama87I	CYCGRG	1 cut(s)	442
Aor13HI	TCCGGA	1 cut(s)	152
AoxI	GGCC	2 cut(s)	179, 363
ApeKI	GCWGC	3 cut(s)	476, 578, 610
ApoI	RAATTY	1 cut(s)	733
Asp700I	GAANNNNTTC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	363, 542
AsuHPI	GGTGA	3 cut(s)	53, 370, 773
AvaI	CYCGRG	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	466
BbrPI	CACGTG	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	138, 307
BbvI	GCAGC	3 cut(s)	463, 590, 597
BccI	CCATC	2 cut(s)	72, 644
BceAI	ACGGC	5 cut(s)	296, 312, 350, 567, 712
BciT130I	CCWGG	2 cut(s)	393, 759
BclI	TGATCA	1 cut(s)	46
BfaI	CTAG	5 cut(s)	137, 308, 321, 617, 663
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	5 cut(s)	91, 477, 579, 611, 660
BlsI	GCNGC	5 cut(s)	92, 478, 580, 612, 661
Bme1390I	CCNGG	2 cut(s)	393, 759
Bme18I	GGWCC	1 cut(s)	542
BmeT110I	CYCGRG	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	363, 542
BmiI	GGNNCC	4 cut(s)	202, 364, 468, 543
BmrFI	CCNGG	2 cut(s)	393, 759
BmsI	GCATC	3 cut(s)	563, 605, 694
BpiI	GAAGAC	2 cut(s)	138, 307
BsaAI	YACGTR	1 cut(s)	185
BsaHI	GRCGYC	2 cut(s)	325, 402
BsaWI	WCCGGW	3 cut(s)	152, 353, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	390, 420, 519, 549
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 398
Bse118I	RCCGGY	2 cut(s)	463, 503
BseAI	TCCGGA	1 cut(s)	152
BseBI	CCWGG	2 cut(s)	393, 759
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	360, 398
BseRI	GAGGAG	3 cut(s)	635, 638, 641
BseXI	GCAGC	3 cut(s)	463, 590, 597
Bsh1236I	CGCG	4 cut(s)	90, 240, 248, 659
Bsh1285I	CGRYCG	1 cut(s)	788
BshFI	GGCC	2 cut(s)	181, 365
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	1 cut(s)	788
BsiHKCI	CYCGRG	1 cut(s)	442
BsiSI	CCGG	5 cut(s)	153, 354, 464, 504, 563
BslFI	GGGAC	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	360, 398
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	2 cut(s)	181, 365
BsoBI	CYCGRG	1 cut(s)	442
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	46, 522
Bsp68I	TCGCGA	1 cut(s)	240
BspACI	CCGC	6 cut(s)	29, 90, 246, 396, 545, 659
BspANI	GGCC	2 cut(s)	181, 365
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	4 cut(s)	90, 240, 248, 659
BspLI	GGNNCC	4 cut(s)	202, 364, 468, 543
BspMI	ACCTGC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	466
BsrFI	RCCGGY	2 cut(s)	463, 503
BssAI	RCCGGY	2 cut(s)	463, 503
BssMI	GATC	2 cut(s)	46, 522
BssNI	GRCGYC	2 cut(s)	325, 402
Bst2UI	CCWGG	2 cut(s)	393, 759
Bst4CI	ACNGT	4 cut(s)	382, 423, 693, 789
Bst6I	CTCTTC	2 cut(s)	153, 167
BstACI	GRCGYC	2 cut(s)	325, 402
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	499
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	4 cut(s)	90, 240, 248, 659
BstKTI	GATC	2 cut(s)	49, 525
BstMBI	GATC	2 cut(s)	46, 522
BstMCI	CGRYCG	1 cut(s)	788
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 473, 665
BstNI	CCWGG	2 cut(s)	393, 759
BstSCI	CCNGG	2 cut(s)	391, 757
BstUI	CGCG	4 cut(s)	90, 240, 248, 659
BstV1I	GCAGC	3 cut(s)	463, 590, 597
BstV2I	GAAGAC	2 cut(s)	138, 307
BsuRI	GGCC	2 cut(s)	181, 365
BtgZI	GCGATG	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	538
BtuMI	TCGCGA	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	289
Cfr10I	RCCGGY	2 cut(s)	463, 503
Cfr13I	GGNCC	2 cut(s)	363, 542
CseI	GACGC	4 cut(s)	333, 334, 391, 468
CspCI	CAANNNNNGTGG	2 cut(s)	546, 581
CviAII	CATG	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	499
DpnI	GATC	2 cut(s)	48, 524
DpnII	GATC	2 cut(s)	46, 522
DraI	TTTAAA	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	153, 167
EarI	CTCTTC	2 cut(s)	153, 167
EciI	GGCGGA	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	442
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	391, 757
FaeI	CATG	1 cut(s)	274
FaiI	YATR	5 cut(s)	24, 125, 230, 272, 575
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	5 cut(s)	91, 477, 579, 611, 660
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	91, 477, 579, 611, 660
FspBI	CTAG	5 cut(s)	137, 308, 321, 617, 663
GluI	GCNGC	5 cut(s)	91, 477, 579, 611, 660
HaeIII	GGCC	2 cut(s)	181, 365
HapII	CCGG	5 cut(s)	153, 354, 464, 504, 563
HgaI	GACGC	4 cut(s)	333, 334, 391, 468
Hin1I	GRCGYC	2 cut(s)	325, 402
Hin1II	CATG	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	2 cut(s)	242, 430
HpaII	CCGG	5 cut(s)	153, 354, 464, 504, 563
HphI	GGTGA	3 cut(s)	53, 370, 773
Hpy166II	GTNNAC	2 cut(s)	413, 496
Hpy188I	TCNGA	2 cut(s)	260, 527
Hpy188III	TCNNGA	4 cut(s)	153, 169, 239, 349
Hpy8I	GTNNAC	2 cut(s)	413, 496
Hpy99I	CGWCG	2 cut(s)	407, 733
HpyAV	CCTTC	4 cut(s)	98, 159, 171, 265
HpyCH4III	ACNGT	4 cut(s)	382, 423, 693, 789
HpyCH4IV	ACGT	3 cut(s)	184, 267, 375
HpyCH4V	TGCA	1 cut(s)	700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 473, 665
HpyF3I	CTNAG	1 cut(s)	499
HpySE526I	ACGT	3 cut(s)	184, 267, 375
Hsp92I	GRCGYC	2 cut(s)	325, 402
Hsp92II	CATG	1 cut(s)	274
Kpn2I	TCCGGA	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	46, 522
Lsp1109I	GCAGC	3 cut(s)	463, 590, 597
LweI	GCATC	3 cut(s)	563, 605, 694
MaeI	CTAG	5 cut(s)	137, 308, 321, 617, 663
MaeII	ACGT	3 cut(s)	184, 267, 375
MaeIII	GTNAC	4 cut(s)	232, 263, 367, 376
MalI	GATC	2 cut(s)	48, 524
MboI	GATC	2 cut(s)	46, 522
MboII	GAAGA	7 cut(s)	110, 113, 143, 170, 184, 307, 446
MluCI	AATT	3 cut(s)	32, 733, 738
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	8 cut(s)	392, 468, 521, 600, 613, 616, 619, 622
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	4 cut(s)	488, 695, 737, 741
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	5 cut(s)	153, 354, 464, 504, 563
MspR9I	CCNGG	2 cut(s)	393, 759
MvaI	CCWGG	2 cut(s)	393, 759
MvnI	CGCG	4 cut(s)	90, 240, 248, 659
MwoI	GCNNNNNNNGC	3 cut(s)	317, 473, 665
NdeII	GATC	2 cut(s)	46, 522
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	4 cut(s)	202, 364, 468, 543
NmuCI	GTSAC	3 cut(s)	232, 263, 376
NruI	TCGCGA	1 cut(s)	240
PacI	TTAATTAA	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	3 cut(s)	331, 600, 785
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	430
PflFI	GACNNNGTC	1 cut(s)	327
PkrI	GCNGC	5 cut(s)	92, 478, 580, 612, 661
PleI	GAGTC	1 cut(s)	236
PmaCI	CACGTG	1 cut(s)	185
PmlI	CACGTG	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	391, 757
PspCI	CACGTG	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	391, 757
PspN4I	GGNNCC	4 cut(s)	202, 364, 468, 543
PspPI	GGNCC	2 cut(s)	363, 542
PsyI	GACNNNGTC	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	476
RruI	TCGCGA	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	488, 695, 737, 741
SatI	GCNGC	5 cut(s)	91, 477, 579, 611, 660
Sau3AI	GATC	2 cut(s)	46, 522
Sau96I	GGNCC	2 cut(s)	363, 542
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	393, 759
SfaNI	GCATC	3 cut(s)	563, 605, 694
SinI	GGWCC	1 cut(s)	542
Sse9I	AATT	3 cut(s)	32, 733, 738
SsiI	CCGC	6 cut(s)	29, 90, 246, 396, 545, 659
SspMI	CTAG	5 cut(s)	137, 308, 321, 617, 663
StyD4I	CCNGG	2 cut(s)	391, 757
TaaI	ACNGT	4 cut(s)	382, 423, 693, 789
TaiI	ACGT	3 cut(s)	187, 270, 378
TaqI	TCGA	1 cut(s)	731
TasI	AATT	3 cut(s)	32, 733, 738
TauI	GCSGC	2 cut(s)	93, 662
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	4 cut(s)	488, 695, 737, 741
Tru9I	TTAA	4 cut(s)	488, 695, 737, 741
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	3 cut(s)	232, 263, 376
TseI	GCWGC	3 cut(s)	476, 578, 610
Tsp45I	GTSAC	3 cut(s)	232, 263, 376
TspDTI	ATGAA	1 cut(s)	573
TspGWI	ACGGA	1 cut(s)	432
TspRI	CASTG	1 cut(s)	538
Tth111I	GACNNNGTC	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	542
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	5 cut(s)	137, 308, 321, 617, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.