Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014938

Physical Location & Seq

Genomic Coordinates Reverse (-)

19963382 .. 19964335

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1201800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGATCCAGTTGCAGCACATGGTCGTCCAATCCCACCTCCTTTCCTTTCAAGAGATCTTCACTTACATCCTCACCACCAATTCCAACAACACCTCCACCCCCACCACCTCAACCACCAAAATTCCGAGGACGAACAAAACGGCAGCGGAATCAACCGTGGAATCAAACGCGATCGCGGCGGCGGAGACGAGAACTCCGCGGGTGGCACCACCTCTCTGGAGGGAAAAGATCAACTGGGGTCCACCAGTGCCGGAGAGGCCGAGATCACAAGACGGCCCCGCGGCCGTCCCGCCGGCTCCAAGAACAAGGCCAAGCCCCCCATCATCATAACCCGGGACAGCGCCAATGCGCTGCGATCCCACGTTATGGAAGTAGCCAACGGCTGCGACATCATGGAAAGTGTCTCCACTTTCGCAAGGCGTAGACAAAGAGGGGTTTGCATTCTCAGCGGCAGCGGAACCGTCACTAATGTCACTCTAAGGCAGCCGGCCTCTCCGGGAGCCGTGGTCACTCTACACGGCAGGTTTGAAATTCTGTCCCTTTCAGGGTCCTTCTTGCCGCCCCCTGCCCCGCCTGCCGCATCATGCTTGACCATATACCTGGCCGGCGGACAGGGCCAAGTCGTTGGCGGTGGTGTGGTGGGTCCACTCTTGGCCTCGGGGCCGGTTGTTATCATGGCCGCGTCCTTTGGGAATGCGGCTTACGAGAGGCTACCCCTGGAGGAAGAAGAGGAGCCGGCCGTGGCCGGGCAAGTACAAGGAAGCGGAGGGTCCCTCGGTTCCCCAGGGATTGGAGGGCAAGAACATCAGCAGCAGTCACTTCAGCAGCAACAACAACAACAGCAACTACTGCAAGATCCTAATGCACCATCGCTTTTTCATGGGATGCCACAGAGTCTGCTAAACCAATTGCCTGCTGATGCATATTGGGGCACGGCACGCCCTCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042826 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

318

Amino Acids

33.4

Weight (kDa)

6.7

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	119 - 230	1.9e-24	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45430 AT3G60870
fragaria_vesca	FvH4_7g12040
malus_domestica	MD02G1201800.v1.1
prunus_persica	Prupe.2G147000_v2.0.a1
pyrus_communis	pycom07g11310
rosa_chinensis	RchiOBHm_Chr1g0350751
rosa_laevigata	RLG00000028456
rosa_multiflora	Rmu_sc0007810.1_g000008
rosa_roxburghii	Rroxscaffold_4G00304520
rosa_rugosa	Rorug01G0213900
rosa_samantha	Rh1AG228000 Rh1BG197500 Rh1CG213000 Rh1DG225400
rosa_wichuraiana	Rw1G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	2 cut(s)	367, 791
AccI	GTMKAC	1 cut(s)	424
AccII	CGCG	5 cut(s)	171, 177, 200, 282, 683
AclWI	GGATC	3 cut(s)	12, 351, 851
AcoI	YGGCCR	5 cut(s)	283, 603, 678, 738, 744
AcsI	RAATTY	2 cut(s)	121, 531
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	4 cut(s)	367, 546, 747, 791
AgsI	TTSAA	2 cut(s)	51, 530
AjnI	CCWGG	3 cut(s)	600, 717, 784
Alw26I	GTCTC	2 cut(s)	180, 409
AlwI	GGATC	3 cut(s)	12, 351, 851
AlwNI	CAGNNNCTG	1 cut(s)	898
Ama87I	CYCGRG	2 cut(s)	333, 658
ApeKI	GCWGC	8 cut(s)	14, 144, 352, 384, 453, 484, 811, 826
ApoI	RAATTY	2 cut(s)	121, 531
AsiSI	GCGATCGC	1 cut(s)	175
AspLEI	GCGC	2 cut(s)	344, 352
AspS9I	GGNCC	7 cut(s)	240, 276, 549, 616, 644, 662, 771
AsuC2I	CCSGG	4 cut(s)	334, 335, 498, 748
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	2 cut(s)	333, 658
AvaII	GGWCC	4 cut(s)	240, 549, 644, 771
BaeGI	GKGCMC	1 cut(s)	935
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	206
BbvI	GCAGC	8 cut(s)	26, 156, 339, 371, 465, 496, 823, 838
BccI	CCATC	2 cut(s)	329, 877
BceAI	ACGGC	8 cut(s)	157, 270, 290, 397, 488, 535, 725, 951
BciT130I	CCWGG	3 cut(s)	602, 719, 786
BcnI	CCSGG	4 cut(s)	334, 335, 498, 748
BcoDI	GTCTC	2 cut(s)	180, 409
BfoI	RGCGCY	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	513
BglI	GCCNNNNNGGC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	55
Bme1390I	CCNGG	7 cut(s)	334, 335, 498, 602, 719, 748, 786
Bme18I	GGWCC	4 cut(s)	240, 549, 644, 771
BmeT110I	CYCGRG	2 cut(s)	333, 658
BmgT120I	GGNCC	7 cut(s)	240, 276, 549, 616, 644, 662, 771
BmrFI	CCNGG	7 cut(s)	334, 335, 498, 602, 719, 748, 786
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	3 cut(s)	590, 876, 910
BmuI	ACTGGG	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	759, 791
BpmI	CTGGAG	2 cut(s)	239, 740
BpuMI	CCSGG	4 cut(s)	334, 335, 498, 748
BsaXI	ACNNNNNCTCC	6 cut(s)	78, 108, 179, 209, 492, 522
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 546, 747, 791
Bse118I	RCCGGY	5 cut(s)	293, 487, 605, 664, 736
Bse1I	ACTGG	3 cut(s)	8, 240, 246
BseBI	CCWGG	3 cut(s)	602, 719, 786
BseGI	GGATG	2 cut(s)	67, 891
BseLI	CCNNNNNNNGG	4 cut(s)	367, 546, 747, 791
BseMII	CTCAG	1 cut(s)	460
BseNI	ACTGG	3 cut(s)	8, 240, 246
BseRI	GAGGAG	1 cut(s)	746
BseSI	GKGCMC	1 cut(s)	935
BseX3I	CGGCCG	2 cut(s)	283, 738
BseXI	GCAGC	8 cut(s)	26, 156, 339, 371, 465, 496, 823, 838
Bsh1236I	CGCG	5 cut(s)	171, 177, 200, 282, 683
Bsh1285I	CGRYCG	3 cut(s)	175, 286, 741
BshNI	GGYRCC	1 cut(s)	206
BsiEI	CGRYCG	3 cut(s)	175, 286, 741
BsiHKCI	CYCGRG	2 cut(s)	333, 658
BsiSI	CCGG	9 cut(s)	252, 294, 334, 488, 497, 606, 665, 737, 747
BslFI	GGGAC	4 cut(s)	273, 350, 523, 757
BslI	CCNNNNNNNGG	4 cut(s)	367, 546, 747, 791
BsmAI	GTCTC	2 cut(s)	180, 409
BsmBI	CGTCTC	1 cut(s)	180
BsmFI	GGGAC	4 cut(s)	273, 350, 523, 757
BsmI	GAATGC	2 cut(s)	441, 700
BsoBI	CYCGRG	2 cut(s)	333, 658
Bsp1286I	GDGCHC	1 cut(s)	935
Bsp143I	GATC	7 cut(s)	4, 55, 172, 229, 264, 356, 856
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	5 cut(s)	171, 177, 200, 282, 683
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	3 cut(s)	12, 351, 851
BspT107I	GGYRCC	1 cut(s)	206
BsrFI	RCCGGY	5 cut(s)	293, 487, 605, 664, 736
BsrI	ACTGG	3 cut(s)	8, 240, 246
BssAI	RCCGGY	5 cut(s)	293, 487, 605, 664, 736
BssMI	GATC	7 cut(s)	4, 55, 172, 229, 264, 356, 856
Bst2UI	CCWGG	3 cut(s)	602, 719, 786
Bst4CI	ACNGT	2 cut(s)	158, 463
Bst6I	CTCTTC	1 cut(s)	723
BstAPI	GCANNNNNTGC	1 cut(s)	850
BstC8I	GCNNGC	7 cut(s)	295, 489, 576, 607, 738, 915, 940
BstDEI	CTNAG	2 cut(s)	446, 479
BstDSI	CCRYGG	5 cut(s)	157, 198, 280, 504, 741
BstF5I	GGATG	2 cut(s)	67, 891
BstFNI	CGCG	5 cut(s)	171, 177, 200, 282, 683
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	2 cut(s)	344, 352
BstKTI	GATC	7 cut(s)	7, 58, 175, 232, 267, 359, 859
BstMAI	GTCTC	2 cut(s)	180, 409
BstMBI	GATC	7 cut(s)	4, 55, 172, 229, 264, 356, 856
BstMCI	CGRYCG	3 cut(s)	175, 286, 741
BstMWI	GCNNNNNNNGC	7 cut(s)	177, 257, 447, 575, 615, 850, 939
BstNI	CCWGG	3 cut(s)	602, 719, 786
BstSCI	CCNGG	7 cut(s)	332, 333, 496, 600, 717, 746, 784
BstSLI	GKGCMC	1 cut(s)	935
BstUI	CGCG	5 cut(s)	171, 177, 200, 282, 683
BstV1I	GCAGC	8 cut(s)	26, 156, 339, 371, 465, 496, 823, 838
BstX2I	RGATCY	3 cut(s)	4, 55, 856
BstXI	CCANNNNNNTGG	3 cut(s)	217, 601, 626
BstYI	RGATCY	3 cut(s)	4, 55, 856
BstZI	CGGCCG	2 cut(s)	283, 738
BtgI	CCRYGG	5 cut(s)	157, 198, 280, 504, 741
BtgZI	GCGATG	1 cut(s)	855
BtsCI	GGATG	2 cut(s)	67, 891
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	7 cut(s)	295, 489, 576, 607, 738, 915, 940
CaiI	CAGNNNCTG	1 cut(s)	898
CfoI	GCGC	2 cut(s)	344, 352
Cfr10I	RCCGGY	5 cut(s)	293, 487, 605, 664, 736
Cfr13I	GGNCC	7 cut(s)	240, 276, 549, 616, 644, 662, 771
Cfr42I	CCGCGG	2 cut(s)	201, 283
Cfr9I	CCCGGG	1 cut(s)	333
CseI	GACGC	1 cut(s)	672
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	5 cut(s)	20, 394, 585, 676, 881
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	2 cut(s)	446, 479
DpnI	GATC	7 cut(s)	6, 57, 174, 231, 266, 358, 858
DpnII	GATC	7 cut(s)	4, 55, 172, 229, 264, 356, 856
EaeI	YGGCCR	5 cut(s)	283, 603, 678, 738, 744
EagI	CGGCCG	2 cut(s)	283, 738
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
EciI	GGCGGA	2 cut(s)	198, 624
EclXI	CGGCCG	2 cut(s)	283, 738
Eco47I	GGWCC	4 cut(s)	240, 549, 644, 771
Eco52I	CGGCCG	2 cut(s)	283, 738
Eco57I	CTGAAG	1 cut(s)	806
Eco88I	CYCGRG	2 cut(s)	333, 658
EcoO109I	RGGNCCY	2 cut(s)	549, 771
EcoRII	CCWGG	3 cut(s)	600, 717, 784
EcoT22I	ATGCAT	1 cut(s)	925
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	5 cut(s)	23, 397, 588, 679, 884
FaqI	GGGAC	4 cut(s)	273, 350, 523, 757
FatI	CATG	5 cut(s)	19, 393, 584, 675, 880
FauI	CCCGC	4 cut(s)	193, 287, 298, 579
FblI	GTMKAC	1 cut(s)	424
FokI	GGATG	2 cut(s)	54, 898
GlaI	GCGC	2 cut(s)	343, 351
GsuI	CTGGAG	2 cut(s)	239, 740
HaeII	RGCGCY	1 cut(s)	345
HapII	CCGG	9 cut(s)	252, 294, 334, 488, 497, 606, 665, 737, 747
HgaI	GACGC	1 cut(s)	672
HhaI	GCGC	2 cut(s)	344, 352
Hin1II	CATG	5 cut(s)	23, 397, 588, 679, 884
Hin6I	GCGC	2 cut(s)	342, 350
HinP1I	GCGC	2 cut(s)	342, 350
HinfI	GANTC	3 cut(s)	150, 162, 895
HpaII	CCGG	9 cut(s)	252, 294, 334, 488, 497, 606, 665, 737, 747
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	3 cut(s)	243, 425, 647
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	51, 218
Hpy8I	GTNNAC	3 cut(s)	243, 425, 647
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	2 cut(s)	158, 463
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	5 cut(s)	14, 441, 853, 866, 923
HpyF10VI	GCNNNNNNNGC	7 cut(s)	177, 257, 447, 575, 615, 850, 939
HpyF3I	CTNAG	2 cut(s)	446, 479
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	5 cut(s)	23, 397, 588, 679, 884
HspAI	GCGC	2 cut(s)	342, 350
KflI	GGGWCCC	1 cut(s)	771
KroI	GCCGGC	4 cut(s)	293, 487, 605, 736
KroNI	GCCGGC	4 cut(s)	295, 489, 607, 738
KspI	CCGCGG	2 cut(s)	201, 283
Kzo9I	GATC	7 cut(s)	4, 55, 172, 229, 264, 356, 856
LmnI	GCTCC	3 cut(s)	302, 500, 733
Lsp1109I	GCAGC	8 cut(s)	26, 156, 339, 371, 465, 496, 823, 838
LweI	GCATC	3 cut(s)	590, 876, 910
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	4 cut(s)	463, 472, 508, 816
MalI	GATC	7 cut(s)	6, 57, 174, 231, 266, 358, 858
MboI	GATC	7 cut(s)	4, 55, 172, 229, 264, 356, 856
MboII	GAAGA	3 cut(s)	50, 737, 740
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	3 cut(s)	4, 55, 856
MhlI	GDGCHC	1 cut(s)	935
MluCI	AATT	4 cut(s)	80, 121, 531, 908
MlyI	GAGTC	1 cut(s)	904
MmeI	TCCRAC	1 cut(s)	109
Mph1103I	ATGCAT	1 cut(s)	925
MroNI	GCCGGC	4 cut(s)	293, 487, 605, 736
MspA1I	CMGCKG	5 cut(s)	147, 200, 282, 450, 456
MspI	CCGG	9 cut(s)	252, 294, 334, 488, 497, 606, 665, 737, 747
MspR9I	CCNGG	7 cut(s)	334, 335, 498, 602, 719, 748, 786
MunI	CAATTG	1 cut(s)	908
Mva1269I	GAATGC	2 cut(s)	441, 700
MvaI	CCWGG	3 cut(s)	602, 719, 786
MvnI	CGCG	5 cut(s)	171, 177, 200, 282, 683
MwoI	GCNNNNNNNGC	7 cut(s)	177, 257, 447, 575, 615, 850, 939
NaeI	GCCGGC	4 cut(s)	295, 489, 607, 738
NciI	CCSGG	4 cut(s)	334, 335, 498, 748
NdeII	GATC	7 cut(s)	4, 55, 172, 229, 264, 356, 856
NgoMIV	GCCGGC	4 cut(s)	293, 487, 605, 736
NlaIII	CATG	5 cut(s)	23, 397, 588, 679, 884
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	4 cut(s)	463, 472, 508, 816
NsiI	ATGCAT	1 cut(s)	925
PasI	CCCWGGG	1 cut(s)	785
PctI	GAATGC	2 cut(s)	441, 700
PdiI	GCCGGC	4 cut(s)	295, 489, 607, 738
PfeI	GAWTC	2 cut(s)	150, 162
PflMI	CCANNNNNTGG	2 cut(s)	367, 791
PfoI	TCCNGGA	1 cut(s)	496
Ple19I	CGATCG	1 cut(s)	175
PleI	GAGTC	1 cut(s)	903
PpsI	GAGTC	1 cut(s)	903
PpuMI	RGGWCCY	2 cut(s)	549, 771
Psp5II	RGGWCCY	2 cut(s)	549, 771
Psp6I	CCWGG	3 cut(s)	600, 717, 784
PspGI	CCWGG	3 cut(s)	600, 717, 784
PspPI	GGNCC	7 cut(s)	240, 276, 549, 616, 644, 662, 771
PspPPI	RGGWCCY	2 cut(s)	549, 771
PstNI	CAGNNNCTG	1 cut(s)	898
PsuI	RGATCY	3 cut(s)	4, 55, 856
PvuI	CGATCG	1 cut(s)	175
RgaI	GCGATCGC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
SacII	CCGCGG	2 cut(s)	201, 283
Sau3AI	GATC	7 cut(s)	4, 55, 172, 229, 264, 356, 856
Sau96I	GGNCC	7 cut(s)	240, 276, 549, 616, 644, 662, 771
SchI	GAGTC	1 cut(s)	904
ScrFI	CCNGG	7 cut(s)	334, 335, 498, 602, 719, 748, 786
SduI	GDGCHC	1 cut(s)	935
SetI	ASST	7 cut(s)	40, 96, 111, 215, 366, 527, 603
SfaAI	GCGATCGC	1 cut(s)	175
SfaNI	GCATC	3 cut(s)	590, 876, 910
Sfr303I	CCGCGG	2 cut(s)	201, 283
SgfI	GCGATCGC	1 cut(s)	175
SgrBI	CCGCGG	2 cut(s)	201, 283
SinI	GGWCC	4 cut(s)	240, 549, 644, 771
SmaI	CCCGGG	1 cut(s)	335
Sse9I	AATT	4 cut(s)	80, 121, 531, 908
StyD4I	CCNGG	7 cut(s)	332, 333, 496, 600, 717, 746, 784
TaaI	ACNGT	2 cut(s)	158, 463
TaiI	ACGT	1 cut(s)	366
TasI	AATT	4 cut(s)	80, 121, 531, 908
TatI	WGTACW	1 cut(s)	754
TauI	GCSGC	8 cut(s)	180, 183, 285, 453, 562, 581, 683, 701
TfiI	GAWTC	2 cut(s)	150, 162
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	4 cut(s)	463, 472, 508, 816
TseI	GCWGC	8 cut(s)	14, 144, 352, 384, 453, 484, 811, 826
Tsp45I	GTSAC	4 cut(s)	463, 472, 508, 816
TspDTI	ATGAA	1 cut(s)	869
TspMI	CCCGGG	1 cut(s)	333
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	2 cut(s)	367, 791
VpaK11BI	GGWCC	4 cut(s)	240, 549, 644, 771
XapI	RAATTY	2 cut(s)	121, 531
XmaI	CCCGGG	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	424
Zsp2I	ATGCAT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.