AT2G45520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012070
Physical Location & Seq
Reverse (-)
18755045 .. 18756302
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45520.1

Sequence Viewer

Length: 618 bp
ATGGGAGGGAAAGGAAAAAAGAGGAGAGAGAAAAATTACCTAGCTGCTCACGGCGGACCGGCGAGACTTCCGCCGCCGCCTGATCGTTCGAAGCAAGATGATGTTCCTTCTACGCTCCGTATCCTCATGAACTACACTTCTCCTTCTCCCCATGATTCTACTAAACAAGTCGTAGAGAAGAAGGAAAAGCTTAAGAAAGCTGAAGTAGTTGTTCCTGCAACGGAGAGTGATGGAGATGATAGTGTGGTGGAGAAGAAGAAGAAAAAGAGGAAGAGAAATCAAATGACGGATCTTCGTTTTGAAAACGAACTTGCAGAGATTGATGGTCGGTCTAAAAGGAAAGAACGCAAGAAGAAGTATTGGGAGGCCAAGAAGCAAAAGAAGAATAAAGGAAAGACTGAAGATACCCTCCGTGAAAACTTCCCCAAGCATGAACAGATAAGATTTGGTGATGTTGTGCAAGCTCCACTTAAGTTGGCTGTTGTTCCGAAGGCAAGAAAGTCTACTCTAAGTGCTTCCCAGGAGAGGCTGCGATTACAAGCCATCGATGCTTACAGATCACGCAAGGGATGGACCGCTAGACCAGGTGTTCCGATTCCTGCCGTGATGATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.43

Weight (kDa)

10.25

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 503
AciI CCGC 5 cut(s) 54, 71, 74, 77, 576
AclWI GGATC 1 cut(s) 297
AcuI CTGAAG 2 cut(s) 222, 420
AfiI CCNNNNNNNGG 1 cut(s) 525
AflII CTTAAG 2 cut(s) 191, 470
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 2 cut(s) 519, 583
AluBI AGCT 4 cut(s) 44, 190, 200, 464
AluI AGCT 4 cut(s) 44, 190, 200, 464
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 297
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 2 cut(s) 44, 529
AspS9I GGNCC 2 cut(s) 56, 573
AsuHPI GGTGA 1 cut(s) 461
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 2 cut(s) 56, 573
BbvI GCAGC 2 cut(s) 31, 516
BccI CCATC 4 cut(s) 224, 317, 551, 564
BceAI ACGGC 2 cut(s) 67, 587
BciT130I CCWGG 2 cut(s) 521, 585
BciVI GTATCC 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 2 cut(s) 41, 579
BfrI CTTAAG 2 cut(s) 191, 470
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 4 cut(s) 45, 74, 77, 530
BlsI GCNGC 4 cut(s) 46, 75, 78, 531
Bme1390I CCNGG 2 cut(s) 521, 585
Bme18I GGWCC 2 cut(s) 56, 573
BmgT120I GGNCC 2 cut(s) 56, 573
BmrFI CCNGG 2 cut(s) 521, 585
BmsI GCATC 2 cut(s) 538, 600
Bpu14I TTCGAA 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 525
Bse118I RCCGGY 1 cut(s) 58
BseBI CCWGG 2 cut(s) 521, 585
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 1 cut(s) 575
BseLI CCNNNNNNNGG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 31, 516
BshFI GGCC 1 cut(s) 368
BshVI ATCGAT 1 cut(s) 546
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 525
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 368
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 3 cut(s) 82, 289, 557
BspACI CCGC 5 cut(s) 54, 71, 74, 77, 576
BspANI GGCC 1 cut(s) 368
BspDI ATCGAT 1 cut(s) 546
BspHI TCATGA 1 cut(s) 126
BspPI GGATC 1 cut(s) 297
BspT104I TTCGAA 1 cut(s) 89
BspTI CTTAAG 2 cut(s) 191, 470
BsrFI RCCGGY 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 3 cut(s) 82, 289, 557
Bst2UI CCWGG 2 cut(s) 521, 585
Bst6I CTCTTC 1 cut(s) 266
BstAFI CTTAAG 2 cut(s) 191, 470
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 509
BstF5I GGATG 1 cut(s) 575
BstKTI GATC 3 cut(s) 85, 292, 560
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 3 cut(s) 82, 289, 557
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 2 cut(s) 521, 585
BstSCI CCNGG 2 cut(s) 519, 583
BstV1I GCAGC 2 cut(s) 31, 516
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 546
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 546
BtsCI GGATG 1 cut(s) 575
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 56, 573
ClaI ATCGAT 1 cut(s) 546
CpoI CGGWCCG 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 583
CspCI CAANNNNNGTGG 2 cut(s) 456, 491
CspI CGGWCCG 1 cut(s) 56
CviAII CATG 3 cut(s) 127, 152, 431
CviJI RGCY 8 cut(s) 44, 190, 200, 368, 464, 479, 529, 542
CviKI_1 RGCY 8 cut(s) 44, 190, 200, 368, 464, 479, 529, 542
DdeI CTNAG 1 cut(s) 509
DpnI GATC 3 cut(s) 84, 291, 559
DpnII GATC 3 cut(s) 82, 289, 557
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 2 cut(s) 60, 69
Eco47I GGWCC 2 cut(s) 56, 573
Eco57I CTGAAG 2 cut(s) 222, 420
EcoRII CCWGG 2 cut(s) 519, 583
FaeI CATG 3 cut(s) 130, 155, 434
FaiI YATR 3 cut(s) 128, 153, 432
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 3 cut(s) 126, 151, 430
FblI GTMKAC 1 cut(s) 503
Fnu4HI GCNGC 4 cut(s) 45, 74, 77, 530
FokI GGATG 1 cut(s) 582
Fsp4HI GCNGC 4 cut(s) 45, 74, 77, 530
FspBI CTAG 2 cut(s) 41, 579
GluI GCNGC 4 cut(s) 45, 74, 77, 530
HaeIII GGCC 1 cut(s) 368
HapII CCGG 1 cut(s) 59
Hin1II CATG 3 cut(s) 130, 155, 434
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 155, 595
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 2 cut(s) 489, 594
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 4 cut(s) 117, 153, 175, 484
HpyCH4V TGCA 4 cut(s) 218, 314, 460, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 1 cut(s) 509
Hsp92II CATG 3 cut(s) 130, 155, 434
Kzo9I GATC 3 cut(s) 82, 289, 557
LmnI GCTCC 2 cut(s) 120, 469
LpnPI CCDG 8 cut(s) 72, 93, 228, 506, 533, 570, 597, 612
Lsp1109I GCAGC 2 cut(s) 31, 516
LweI GCATC 2 cut(s) 538, 600
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 2 cut(s) 41, 579
MalI GATC 3 cut(s) 84, 291, 559
MboI GATC 3 cut(s) 82, 289, 557
MboII GAAGA 9 cut(s) 190, 265, 268, 271, 283, 284, 364, 394, 413
MflI RGATCY 1 cut(s) 289
MluCI AATT 1 cut(s) 34
MnlI CCTC 6 cut(s) 15, 134, 261, 358, 419, 519
MseI TTAA 2 cut(s) 192, 471
MspCI CTTAAG 2 cut(s) 191, 470
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 521, 585
MvaI CCWGG 2 cut(s) 521, 585
MwoI GCNNNNNNNGC 1 cut(s) 548
NdeII GATC 3 cut(s) 82, 289, 557
NlaIII CATG 3 cut(s) 130, 155, 434
NspV TTCGAA 1 cut(s) 89
PagI TCATGA 1 cut(s) 126
PfeI GAWTC 2 cut(s) 155, 595
PkrI GCNGC 4 cut(s) 46, 75, 78, 531
Psp6I CCWGG 2 cut(s) 519, 583
PspGI CCWGG 2 cut(s) 519, 583
PspPI GGNCC 2 cut(s) 56, 573
PsuI RGATCY 1 cut(s) 289
Rsr2I CGGWCCG 1 cut(s) 56
RsrII CGGWCCG 1 cut(s) 56
SaqAI TTAA 2 cut(s) 192, 471
SatI GCNGC 4 cut(s) 45, 74, 77, 530
Sau3AI GATC 3 cut(s) 82, 289, 557
Sau96I GGNCC 2 cut(s) 56, 573
ScrFI CCNGG 2 cut(s) 521, 585
SetI ASST 6 cut(s) 42, 46, 192, 202, 466, 589
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 2 cut(s) 538, 600
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 2 cut(s) 56, 573
SmlI CTYRAG 2 cut(s) 191, 470
SmoI CTYRAG 2 cut(s) 191, 470
Sse9I AATT 1 cut(s) 34
SsiI CCGC 5 cut(s) 54, 71, 74, 77, 576
SspMI CTAG 2 cut(s) 41, 579
StyD4I CCNGG 2 cut(s) 519, 583
TaqI TCGA 2 cut(s) 89, 546
TaqII GACCGA 1 cut(s) 318
TasI AATT 1 cut(s) 34
TauI GCSGC 2 cut(s) 76, 79
TfiI GAWTC 2 cut(s) 155, 595
Tru1I TTAA 2 cut(s) 192, 471
Tru9I TTAA 2 cut(s) 192, 471
TseI GCWGC 2 cut(s) 44, 529
TspDTI ATGAA 2 cut(s) 143, 447
TspGWI ACGGA 4 cut(s) 107, 236, 302, 401
Vha464I CTTAAG 2 cut(s) 191, 470
VpaK11BI GGWCC 2 cut(s) 56, 573
XmiI GTMKAC 1 cut(s) 503
XspI CTAG 2 cut(s) 41, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.