FvH4_7g12340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012070
Physical Location & Seq
Reverse (-)
11183935 .. 11186126
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12340.t1

Sequence Viewer

Length: 684 bp
ATGGGAGGTAAAGGCATTAGGCGGAGAGCCAAGAACTACAAAGAAGCTCACGGCGGTTACAGGAGGCTGCCGCCGCCGCCTGATCGTTCTCAACCTGACGCTTTGCCCTCTAAACTTCGCAAAATCCTCTCCTACACCACTCCCCAAGGCTCTTTGAAGGTTGCCAAAGATGCTGAGCAGAACAACAAGAAGAGAGATGGAGCTGGTGCTGCTCCACCAAAGAAGGATAAGGAGGAAGTGGAGGTAGAAGATACTAGTATGGAAAATGGGGACTATGATGAGAATATGAATGTTGCACCTCCACATTCGGAGGAGAAGAAAAAGAAGAAAAGGAAGCGAAAGCAAGTGGTTGACCTTCGGTTTGAAGCGGAAGCGCTGGAGCAATCGGGAGGCCGTCTGAAAAGAAAGGAGCGCAAGAAAAAGTACTTGGAAGCAAAGAAAAACAAGAGCAAAAAAGGCAAGAAAGAAGATAATGTAGACGACTTTCCTGGACGTGAGAAAATCAGATTTGGAGAGGTGGTTCAAGCTCCTCCAAAGTTGGTTGCTCCCAAGGCATTTAAGAATGTACAAGATGCTTCGAAGGAGCGGGTTCGGGTCAATGCTATTGAGGCATATAGGCAACGCAAAAAATGGAACTCAAGACCAGGGATTCAGCTCCCTAATCCTGTGACTGCATCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.82

Weight (kDa)

10.11

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 586
AccI GTMKAC 1 cut(s) 477
AciI CCGC 7 cut(s) 22, 54, 71, 74, 77, 368, 586
AfaI GTAC 2 cut(s) 425, 567
AfeI AGCGCT 1 cut(s) 375
AgsI TTSAA 3 cut(s) 157, 365, 524
AhlI ACTAGT 1 cut(s) 254
AjiI CACGTC 1 cut(s) 494
AjnI CCWGG 2 cut(s) 487, 643
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AloI GAACNNNNNNTCC 2 cut(s) 504, 536
AluBI AGCT 4 cut(s) 47, 203, 527, 655
AluI AGCT 4 cut(s) 47, 203, 527, 655
Aor51HI AGCGCT 1 cut(s) 375
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 67, 209
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspLEI GCGC 2 cut(s) 376, 414
AsuII TTCGAA 1 cut(s) 578
BbvI GCAGC 2 cut(s) 54, 196
BccI CCATC 1 cut(s) 191
BceAI ACGGC 2 cut(s) 67, 378
BciT130I CCWGG 2 cut(s) 489, 645
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 377
BisI GCNGC 5 cut(s) 68, 71, 74, 77, 210
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 5 cut(s) 69, 72, 75, 78, 211
BmcAI AGTACT 1 cut(s) 425
Bme1390I CCNGG 2 cut(s) 489, 645
BmgBI CACGTC 1 cut(s) 494
BmrFI CCNGG 2 cut(s) 489, 645
BmsI GCATC 2 cut(s) 160, 562
BpmI CTGGAG 1 cut(s) 398
Bpu1102I GCTNAGC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 622
BsaJI CCNNGG 3 cut(s) 145, 549, 644
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
BseBI CCWGG 2 cut(s) 489, 645
BseDI CCNNGG 3 cut(s) 145, 549, 644
BseGI GGATG 1 cut(s) 674
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 2 cut(s) 326, 519
BseXI GCAGC 2 cut(s) 54, 196
BshFI GGCC 1 cut(s) 393
BslFI GGGAC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 578
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 174
BspACI CCGC 7 cut(s) 22, 54, 71, 74, 77, 368, 586
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 586
BsrGI TGTACA 1 cut(s) 565
BssECI CCNNGG 3 cut(s) 145, 549, 644
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 145, 549
Bst2UI CCWGG 2 cut(s) 489, 645
Bst6I CTCTTC 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 565
BstBI TTCGAA 1 cut(s) 578
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 674
BstH2I RGCGCY 1 cut(s) 377
BstHHI GCGC 2 cut(s) 376, 414
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 7 cut(s) 73, 76, 170, 209, 456, 551, 608
BstNI CCWGG 2 cut(s) 489, 645
BstSCI CCNGG 2 cut(s) 487, 643
BstV1I GCAGC 2 cut(s) 54, 196
BsuRI GGCC 1 cut(s) 393
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 674
CfoI GCGC 2 cut(s) 376, 414
CseI GACGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 424, 566
CviJI RGCY 8 cut(s) 29, 47, 67, 150, 203, 393, 527, 655
CviKI_1 RGCY 8 cut(s) 29, 47, 67, 150, 203, 393, 527, 655
CviQI GTAC 2 cut(s) 424, 566
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 145, 549
Eco47III AGCGCT 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 487, 643
EcoT14I CCWWGG 2 cut(s) 145, 549
ErhI CCWWGG 2 cut(s) 145, 549
FaiI YATR 5 cut(s) 260, 276, 287, 613, 615
FaqI GGGAC 1 cut(s) 284
FauI CCCGC 1 cut(s) 579
FblI GTMKAC 1 cut(s) 477
Fnu4HI GCNGC 5 cut(s) 68, 71, 74, 77, 210
FokI GGATG 1 cut(s) 661
Fsp4HI GCNGC 5 cut(s) 68, 71, 74, 77, 210
FspBI CTAG 1 cut(s) 255
GlaI GCGC 2 cut(s) 375, 413
GluI GCNGC 5 cut(s) 68, 71, 74, 77, 210
GsuI CTGGAG 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 377
HaeIII GGCC 1 cut(s) 393
HgaI GACGC 1 cut(s) 107
HhaI GCGC 2 cut(s) 376, 414
Hin6I GCGC 2 cut(s) 374, 412
HinP1I GCGC 2 cut(s) 374, 412
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 1 cut(s) 649
Hpy166II GTNNAC 2 cut(s) 352, 478
Hpy188I TCNGA 3 cut(s) 310, 399, 506
Hpy188III TCNNGA 2 cut(s) 387, 639
Hpy8I GTNNAC 2 cut(s) 352, 478
HpyAV CCTTC 4 cut(s) 151, 217, 365, 574
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 2 cut(s) 296, 674
HpyF10VI GCNNNNNNNGC 7 cut(s) 73, 76, 170, 209, 456, 551, 608
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 493
HspAI GCGC 2 cut(s) 374, 412
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 8 cut(s) 200, 217, 379, 409, 532, 550, 583, 660
Lsp1109I GCAGC 2 cut(s) 54, 196
LweI GCATC 2 cut(s) 160, 562
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 493
MaeIII GTNAC 2 cut(s) 56, 667
MalI GATC 1 cut(s) 84
MbiI CCGCTC 1 cut(s) 586
MboI GATC 1 cut(s) 82
MboII GAAGA 5 cut(s) 202, 260, 328, 337, 479
MseI TTAA 1 cut(s) 558
MspR9I CCNGG 2 cut(s) 489, 645
MvaI CCWGG 2 cut(s) 489, 645
MwoI GCNNNNNNNGC 7 cut(s) 73, 76, 170, 209, 456, 551, 608
NdeII GATC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 667
NspV TTCGAA 1 cut(s) 578
PfeI GAWTC 1 cut(s) 649
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 5 cut(s) 69, 72, 75, 78, 211
Psp6I CCWGG 2 cut(s) 487, 643
PspGI CCWGG 2 cut(s) 487, 643
RsaI GTAC 2 cut(s) 425, 567
RsaNI GTAC 2 cut(s) 424, 566
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 5 cut(s) 68, 71, 74, 77, 210
Sau3AI GATC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 489, 645
SfaNI GCATC 2 cut(s) 160, 562
SfuI TTCGAA 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
SpeI ACTAGT 1 cut(s) 254
SsiI CCGC 7 cut(s) 22, 54, 71, 74, 77, 368, 586
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 487, 643
StyI CCWWGG 2 cut(s) 145, 549
TaiI ACGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 578
TatI WGTACW 2 cut(s) 423, 565
TauI GCSGC 3 cut(s) 73, 76, 79
TfiI GAWTC 1 cut(s) 649
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 2 cut(s) 67, 209
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.