pycom02g16370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012070
Physical Location & Seq
Forward (+)
13484874 .. 13486432
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16370.4

Sequence Viewer

Length: 840 bp
ATGCACACAGGTGCATCTCCAACTAGTTGGCCCTCGGAATTAAACAATTTTAAGCCCAATGACTCGGTGGGCCTCAAATACGCGCGAAAACAAACAGCCGCTGCAGTTATTAGGGTTTACTTAGACAGAGATAGGACGGAGAAGAGAGAGAGAGAGAGAGAGATGGGAGGTAAAGGAATCAGACGGAGAGAGAAGAATTACAGAGCAGCGCACGATGGAGGATACACCAGGCTGCCGCCGCCACCTGATTACTCTAAAGCCGACGCCTTGCCCTCTAAGCTTCGCAAACTCCTCGCCTTCACTGCTTCTCATGATCCCAAAGACGATTTGAAGCTCTCAAAAGCTGCTGAAGAAAAAAAGAGGAAAAATGGAGTTGGTGCTGCTGAACCAAAGCCCGAGGATGAAGTCGACTTTGAAACTGGATTTGATGATGAGGGTAATGCTGAGGATTCGGAACATCAACATACGGATGAGAAGAAAAAGAAGAAAAGAAAGAGAAAGCAAGTACAGGACCTTCGGTTTGAAAATGTAGGATTGGAGCAATCAGGAACTCGGCTAAAAAGAAAGGAGCGTAAGAAAAAGTACTTGGAGGCAAAGAAAAACAAAAAGAAGAAGGGCAAGACAGAGGAGAATGAAGATTTCCCTGGATGCGAGGAAATCAGATTTGGAGACGTGGTTCAAGCTCCCCCAAAGTTGGTTGTTCCTAAGGCGTTGAAGAATGTACAAGATGCTTCTAAGGAGAGGGTTCGAGTCAAGGCAATTGAGGCATACAGGCAGCGCAAAGGATGGAACGCAAGGCCGGGGATTCGACTTCCTCCTCCTGTGACTGGATCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.85

Weight (kDa)

9.85

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 408
AccII CGCG 2 cut(s) 83, 85
AciI CCGC 3 cut(s) 99, 236, 239
AclWI GGATC 2 cut(s) 308, 838
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 3 cut(s) 507, 584, 723
AfiI CCNNNNNNNGG 2 cut(s) 694, 827
AgsI TTSAA 5 cut(s) 331, 416, 524, 680, 715
AhlI ACTAGT 1 cut(s) 23
AjiI CACGTC 1 cut(s) 673
AjnI CCWGG 2 cut(s) 227, 643
AjuI GAANNNNNNNTTGG 4 cut(s) 569, 601, 648, 680
AleI CACNNNNGTG 1 cut(s) 9
AloI GAACNNNNNNTCC 2 cut(s) 660, 692
AluBI AGCT 4 cut(s) 280, 334, 344, 683
AluI AGCT 4 cut(s) 280, 334, 344, 683
Alw26I GTCTC 1 cut(s) 663
AlwI GGATC 2 cut(s) 308, 838
AlwNI CAGNNNCTG 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 3 cut(s) 29, 70, 797
ApeKI GCWGC 6 cut(s) 101, 206, 232, 344, 380, 775
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AspLEI GCGC 3 cut(s) 85, 211, 780
AspS9I GGNCC 3 cut(s) 30, 70, 511
AsuC2I CCSGG 1 cut(s) 801
AvaI CYCGRG 1 cut(s) 395
AvaII GGWCC 1 cut(s) 511
AxyI CCTNAGG 1 cut(s) 705
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 6 cut(s) 88, 218, 219, 331, 367, 787
BccI CCATC 3 cut(s) 157, 209, 780
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 2 cut(s) 229, 645
BciVI GTATCC 1 cut(s) 215
BcnI CCSGG 1 cut(s) 801
BcoDI GTCTC 1 cut(s) 663
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 9 cut(s) 99, 102, 207, 233, 236, 239, 345, 381, 776
BlsI GCNGC 9 cut(s) 100, 103, 208, 234, 237, 240, 346, 382, 777
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 3 cut(s) 229, 645, 801
Bme18I GGWCC 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 673
BmgT120I GGNCC 3 cut(s) 30, 70, 511
BmrFI CCNGG 3 cut(s) 229, 645, 801
BmsI GCATC 3 cut(s) 23, 638, 718
Bpu10I CCTNAGC 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 801
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 4 cut(s) 33, 396, 643, 800
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 2 cut(s) 694, 827
Bse1I ACTGG 2 cut(s) 424, 832
Bse21I CCTNAGG 1 cut(s) 705
BseBI CCWGG 2 cut(s) 229, 645
BseDI CCNNGG 4 cut(s) 33, 396, 643, 800
BseGI GGATG 4 cut(s) 406, 475, 653, 791
BseLI CCNNNNNNNGG 2 cut(s) 694, 827
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 2 cut(s) 424, 832
BseRI GAGGAG 3 cut(s) 281, 641, 807
BseXI GCAGC 6 cut(s) 88, 218, 219, 331, 367, 787
Bsh1236I CGCG 2 cut(s) 83, 85
BshFI GGCC 3 cut(s) 31, 72, 799
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 1 cut(s) 800
BslI CCNNNNNNNGG 2 cut(s) 694, 827
BsmAI GTCTC 1 cut(s) 663
BsmBI CGTCTC 1 cut(s) 663
BsnI GGCC 3 cut(s) 31, 72, 799
BsoBI CYCGRG 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 721
Bsp143I GATC 2 cut(s) 313, 830
BspACI CCGC 3 cut(s) 99, 236, 239
BspANI GGCC 3 cut(s) 31, 72, 799
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 2 cut(s) 83, 85
BspHI TCATGA 1 cut(s) 310
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 2 cut(s) 308, 838
BsrGI TGTACA 1 cut(s) 721
BsrI ACTGG 2 cut(s) 424, 832
BssECI CCNNGG 4 cut(s) 33, 396, 643, 800
BssMI GATC 2 cut(s) 313, 830
BssNI GRCGYC 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 229, 645
Bst6I CTCTTC 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 264
BstAUI TGTACA 1 cut(s) 721
BstDEI CTNAG 5 cut(s) 121, 276, 444, 705, 735
BstF5I GGATG 4 cut(s) 406, 475, 653, 791
BstFNI CGCG 2 cut(s) 83, 85
BstHHI GCGC 3 cut(s) 85, 211, 780
BstKTI GATC 2 cut(s) 316, 833
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 2 cut(s) 313, 830
BstMWI GCNNNNNNNGC 4 cut(s) 238, 277, 302, 764
BstNI CCWGG 2 cut(s) 229, 645
BstSCI CCNGG 3 cut(s) 227, 643, 799
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 2 cut(s) 83, 85
BstV1I GCAGC 6 cut(s) 88, 218, 219, 331, 367, 787
BstXI CCANNNNNNTGG 1 cut(s) 27
Bsu36I CCTNAGG 1 cut(s) 705
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 3 cut(s) 31, 72, 799
BtrI CACGTC 1 cut(s) 673
BtsCI GGATG 4 cut(s) 406, 475, 653, 791
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 101
CciI TCATGA 1 cut(s) 310
CfoI GCGC 3 cut(s) 85, 211, 780
Cfr13I GGNCC 3 cut(s) 30, 70, 511
CseI GACGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 506, 583, 722
CviAII CATG 1 cut(s) 311
CviQI GTAC 3 cut(s) 506, 583, 722
DdeI CTNAG 5 cut(s) 121, 276, 444, 705, 735
DpnI GATC 2 cut(s) 315, 832
DpnII GATC 2 cut(s) 313, 830
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 511
Eco57I CTGAAG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 705
Eco88I CYCGRG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 227, 643
Esp3I CGTCTC 1 cut(s) 663
FaeI CATG 1 cut(s) 314
FaiI YATR 3 cut(s) 312, 465, 769
FatI CATG 1 cut(s) 310
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 9 cut(s) 99, 102, 207, 233, 236, 239, 345, 381, 776
FokI GGATG 4 cut(s) 413, 482, 660, 798
Fsp4HI GCNGC 9 cut(s) 99, 102, 207, 233, 236, 239, 345, 381, 776
FspBI CTAG 1 cut(s) 24
GlaI GCGC 3 cut(s) 84, 210, 779
GluI GCNGC 9 cut(s) 99, 102, 207, 233, 236, 239, 345, 381, 776
HaeIII GGCC 3 cut(s) 31, 72, 799
HapII CCGG 1 cut(s) 800
HgaI GACGC 1 cut(s) 272
HhaI GCGC 3 cut(s) 85, 211, 780
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 3 cut(s) 83, 209, 778
HinP1I GCGC 3 cut(s) 83, 209, 778
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 5 cut(s) 62, 177, 449, 750, 805
HpaII CCGG 1 cut(s) 800
Hpy166II GTNNAC 2 cut(s) 118, 409
Hpy188I TCNGA 4 cut(s) 37, 182, 454, 662
Hpy188III TCNNGA 2 cut(s) 311, 546
Hpy8I GTNNAC 2 cut(s) 118, 409
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 307, 524, 607
HpyCH4IV ACGT 1 cut(s) 672
HpyCH4V TGCA 3 cut(s) 4, 14, 104
HpyF10VI GCNNNNNNNGC 4 cut(s) 238, 277, 302, 764
HpyF3I CTNAG 5 cut(s) 121, 276, 444, 705, 735
HpySE526I ACGT 1 cut(s) 672
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 3 cut(s) 83, 209, 778
Kzo9I GATC 2 cut(s) 313, 830
LmnI GCTCC 3 cut(s) 538, 568, 688
Lsp1109I GCAGC 6 cut(s) 88, 218, 219, 331, 367, 787
LweI GCATC 3 cut(s) 23, 638, 718
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 672
MaeIII GTNAC 1 cut(s) 823
MalI GATC 2 cut(s) 315, 832
MboI GATC 2 cut(s) 313, 830
MboII GAAGA 8 cut(s) 154, 205, 362, 487, 496, 622, 647, 727
MfeI CAATTG 1 cut(s) 759
MluCI AATT 4 cut(s) 38, 46, 196, 759
MlyI GAGTC 2 cut(s) 56, 759
MmeI TCCRAC 1 cut(s) 44
MseI TTAA 2 cut(s) 41, 51
MslI CAYNNNNRTG 2 cut(s) 9, 468
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 800
MspR9I CCNGG 3 cut(s) 229, 645, 801
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 2 cut(s) 229, 645
MvnI CGCG 2 cut(s) 83, 85
MwoI GCNNNNNNNGC 4 cut(s) 238, 277, 302, 764
NciI CCSGG 1 cut(s) 801
NdeII GATC 2 cut(s) 313, 830
NlaIII CATG 1 cut(s) 314
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 823
OliI CACNNNNGTG 1 cut(s) 9
PagI TCATGA 1 cut(s) 310
PfeI GAWTC 3 cut(s) 177, 449, 805
PkrI GCNGC 9 cut(s) 100, 103, 208, 234, 237, 240, 346, 382, 777
PleI GAGTC 2 cut(s) 56, 758
PpsI GAGTC 2 cut(s) 56, 758
PpuMI RGGWCCY 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 511
Psp6I CCWGG 2 cut(s) 227, 643
PspGI CCWGG 2 cut(s) 227, 643
PspPI GGNCC 3 cut(s) 30, 70, 511
PspPPI RGGWCCY 1 cut(s) 511
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 3 cut(s) 507, 584, 723
RsaNI GTAC 3 cut(s) 506, 583, 722
RseI CAYNNNNRTG 2 cut(s) 9, 468
SalI GTCGAC 1 cut(s) 407
SaqAI TTAA 2 cut(s) 41, 51
SatI GCNGC 9 cut(s) 99, 102, 207, 233, 236, 239, 345, 381, 776
Sau3AI GATC 2 cut(s) 313, 830
Sau96I GGNCC 3 cut(s) 30, 70, 511
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 2 cut(s) 56, 759
ScrFI CCNGG 3 cut(s) 229, 645, 801
SetI ASST 9 cut(s) 13, 172, 247, 282, 336, 346, 516, 675, 685
SfaNI GCATC 3 cut(s) 23, 638, 718
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 2 cut(s) 9, 468
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 4 cut(s) 38, 46, 196, 759
SsiI CCGC 3 cut(s) 99, 236, 239
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 3 cut(s) 227, 643, 799
TaiI ACGT 1 cut(s) 675
TaqI TCGA 3 cut(s) 408, 748, 808
TasI AATT 4 cut(s) 38, 46, 196, 759
TatI WGTACW 3 cut(s) 505, 582, 721
TauI GCSGC 3 cut(s) 101, 238, 241
TfiI GAWTC 3 cut(s) 177, 449, 805
Tru1I TTAA 2 cut(s) 41, 51
Tru9I TTAA 2 cut(s) 41, 51
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 823
TseI GCWGC 6 cut(s) 101, 206, 232, 344, 380, 775
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 2 cut(s) 417, 648
TspGWI ACGGA 3 cut(s) 152, 199, 482
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.