Rh1CG215000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012070
Physical Location & Seq
Reverse (-)
46280548 .. 46281792
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG215000.1

Sequence Viewer

Length: 675 bp
ATGGGAGGTAAAGGAATTAGACGGAGAGCCAAGAACTACAGAGAAGCCCACGGCGGTTACAGTAGGCTTCCGCCGCCGCCTGATCGTTCTCAAGTAGACACTTTGCCCTCTAAACTCCGCAAAATCCTCTCCTACTCCACTCCCCAAGGCTCTTTGAAGCTTGCCAAAGATGCTGAGCAGAAGAAGAAGAGAGATGGAGTTGGTGCTGCTCAACCAAAGAAGGATAAGGATGAAGTGGAGGTAGAAGAAGCTAGTATGGAAGATGGGGATAATGCTGAGAATGTTGCACCTCAGCATTCGGATGAGAAGAAAAAGAAGAAACGAAAGCGAAAGCAAGTGCTTGACCTTCGATTTGAAGCAGAAGCACTGGAGCAATCGGGAGGCCGTCTGAAAAGAAAGGAGCGCAAGAAAAAGTACTTGGAAACAAAGAAAAACAAAAACAAAAAGGGCAAGAAAGAAGATAATGTAGACGATTTTCCTGGACGTGAGAAGATTAGATTTGGAGAGGTGGTTCAAGCTCCTCCAAAGTTGGTTGCTCCTAAGGCATTTAAGAATGTACAAGATGCTTCGAAGGAGCGGGTTCGGGTCAATGCTATTGAGGCATACAGGCAACGCAAAAAATGGAACTCAAGACCAGGGATTCAGCTCCCTACTCCTGTGACTGCATCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.48

Weight (kDa)

10.13

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 577
AccI GTMKAC 2 cut(s) 96, 468
AciI CCGC 6 cut(s) 54, 71, 74, 77, 118, 577
AfaI GTAC 2 cut(s) 416, 558
AgsI TTSAA 3 cut(s) 157, 356, 515
AjiI CACGTC 1 cut(s) 485
AjnI CCWGG 2 cut(s) 478, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
AluBI AGCT 4 cut(s) 160, 251, 518, 646
AluI AGCT 4 cut(s) 160, 251, 518, 646
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 1 cut(s) 405
AsuII TTCGAA 1 cut(s) 569
AxyI CCTNAGG 1 cut(s) 540
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 188, 257
BceAI ACGGC 2 cut(s) 67, 369
BciT130I CCWGG 2 cut(s) 480, 636
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 37
BisI GCNGC 3 cut(s) 74, 77, 207
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 3 cut(s) 75, 78, 208
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 2 cut(s) 480, 636
BmgBI CACGTC 1 cut(s) 485
BmrFI CCNGG 2 cut(s) 480, 636
BmsI GCATC 2 cut(s) 160, 553
BpmI CTGGAG 1 cut(s) 389
Bpu10I CCTNAGC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 2 cut(s) 75, 613
BsaJI CCNNGG 3 cut(s) 49, 145, 635
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bse1I ACTGG 1 cut(s) 372
Bse21I CCTNAGG 1 cut(s) 540
BseBI CCWGG 2 cut(s) 480, 636
BseDI CCNNGG 3 cut(s) 49, 145, 635
BseGI GGATG 3 cut(s) 235, 307, 665
BseMII CTCAG 3 cut(s) 165, 267, 305
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 384
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 384
Bsp119I TTCGAA 1 cut(s) 569
Bsp1407I TGTACA 1 cut(s) 556
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 174
BspACI CCGC 6 cut(s) 54, 71, 74, 77, 118, 577
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 3 cut(s) 166, 268, 304
BspT104I TTCGAA 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 577
BsrGI TGTACA 1 cut(s) 556
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 3 cut(s) 49, 145, 635
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 480, 636
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 556
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 4 cut(s) 174, 276, 291, 540
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 235, 307, 665
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 73, 170, 542, 599
BstNI CCWGG 2 cut(s) 480, 636
BstSCI CCNGG 2 cut(s) 478, 634
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 193
Bsu36I CCTNAGG 1 cut(s) 540
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 485
BtsCI GGATG 3 cut(s) 235, 307, 665
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 405
Csp6I GTAC 2 cut(s) 415, 557
CviJI RGCY 9 cut(s) 29, 47, 67, 150, 160, 251, 384, 518, 646
CviKI_1 RGCY 9 cut(s) 29, 47, 67, 150, 160, 251, 384, 518, 646
CviQI GTAC 2 cut(s) 415, 557
DdeI CTNAG 4 cut(s) 174, 276, 291, 540
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 540
EcoRII CCWGG 2 cut(s) 478, 634
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaiI YATR 2 cut(s) 257, 604
FauI CCCGC 1 cut(s) 570
FblI GTMKAC 2 cut(s) 96, 468
Fnu4HI GCNGC 3 cut(s) 74, 77, 207
FokI GGATG 3 cut(s) 242, 314, 652
Fsp4HI GCNGC 3 cut(s) 74, 77, 207
FspBI CTAG 1 cut(s) 252
GlaI GCGC 1 cut(s) 404
GluI GCNGC 3 cut(s) 74, 77, 207
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 1 cut(s) 384
HhaI GCGC 1 cut(s) 405
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 640
Hpy166II GTNNAC 2 cut(s) 97, 469
Hpy188I TCNGA 2 cut(s) 301, 390
Hpy188III TCNNGA 2 cut(s) 378, 630
Hpy8I GTNNAC 2 cut(s) 97, 469
HpyAV CCTTC 3 cut(s) 214, 356, 565
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 484
HpyCH4V TGCA 2 cut(s) 287, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 170, 542, 599
HpyF3I CTNAG 4 cut(s) 174, 276, 291, 540
HpySE526I ACGT 1 cut(s) 484
HspAI GCGC 1 cut(s) 403
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 6 cut(s) 370, 400, 523, 541, 574, 651
LpnPI CCDG 8 cut(s) 93, 353, 465, 492, 592, 621, 648, 669
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 160, 553
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 484
MaeIII GTNAC 2 cut(s) 56, 658
MalI GATC 1 cut(s) 84
MbiI CCGCTC 1 cut(s) 577
MboI GATC 1 cut(s) 82
MboII GAAGA 9 cut(s) 193, 196, 199, 257, 272, 319, 328, 470, 502
MluCI AATT 1 cut(s) 15
MnlI CCTC 8 cut(s) 118, 137, 232, 300, 374, 499, 531, 592
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 480, 636
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 2 cut(s) 480, 636
MwoI GCNNNNNNNGC 4 cut(s) 73, 170, 542, 599
NdeII GATC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 658
NspV TTCGAA 1 cut(s) 569
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 640
PfoI TCCNGGA 1 cut(s) 478
PkrI GCNGC 3 cut(s) 75, 78, 208
Psp6I CCWGG 2 cut(s) 478, 634
PspGI CCWGG 2 cut(s) 478, 634
RsaI GTAC 2 cut(s) 416, 558
RsaNI GTAC 2 cut(s) 415, 557
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 3 cut(s) 74, 77, 207
Sau3AI GATC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 480, 636
SfaNI GCATC 2 cut(s) 160, 553
SfcI CTRYAG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 90, 628
SmoI CTYRAG 2 cut(s) 90, 628
Sse9I AATT 1 cut(s) 15
SsiI CCGC 6 cut(s) 54, 71, 74, 77, 118, 577
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 478, 634
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 487
TaqI TCGA 2 cut(s) 349, 569
TasI AATT 1 cut(s) 15
TatI WGTACW 2 cut(s) 414, 556
TauI GCSGC 2 cut(s) 76, 79
TfiI GAWTC 1 cut(s) 640
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 372
XmiI GTMKAC 2 cut(s) 96, 468
XspI CTAG 1 cut(s) 252
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.