Rh6CG134600

Cysteine-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012070
Physical Location & Seq
Forward (+)
16780664 .. 16781818
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG134600.1

Sequence Viewer

Length: 306 bp
ATGGGAGGAAAAGGCATTAGACGGAGAGCCAAGAACTACAATAGGCCGTCGCCACCGCCTGGTCGTTCTCAAATCGACACTTTGCCCTCTAAACTCCACAAAATCCTCTCTTACTCAACTCCCCAAGAGTCGTCAAGGTTGTTCATGTGGAACACTGCCAACATCAGCAGTGAACTGAACCGGTTCAACCAAGTTTTGGGGGCGAGCATGAAACAGATGGCCATGGCGGCTTCGAACAACAGCGATAAGTTCACAACGAGAGAGGCCAACTTCACGGGGTTGATTAGCTTGTACATCTTGGGGTAG

Protein Analysis

101

Amino Acids

11.27

Weight (kDa)

10.73

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 59, 196
AciI CCGC 2 cut(s) 56, 227
AcoI YGGCCR 1 cut(s) 219
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 59, 196
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
AoxI GGCC 3 cut(s) 44, 219, 264
AsiGI ACCGGT 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 182
AsuII TTCGAA 1 cut(s) 233
BalI TGGCCA 1 cut(s) 221
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 60
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 196
Bse118I RCCGGY 1 cut(s) 180
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 59, 196
BshFI GGCC 3 cut(s) 46, 221, 266
BshTI ACCGGT 1 cut(s) 180
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 59, 196
BsnI GGCC 3 cut(s) 46, 221, 266
Bsp119I TTCGAA 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 2 cut(s) 56, 227
BspANI GGCC 3 cut(s) 46, 221, 266
BspT104I TTCGAA 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 180
BsrGI TGTACA 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 60
BstAUI TGTACA 1 cut(s) 291
BstBI TTCGAA 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 205
BstDSI CCRYGG 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BsuRI GGCC 3 cut(s) 46, 221, 266
BtgI CCRYGG 1 cut(s) 222
BtsI GCAGTG 2 cut(s) 153, 175
BtsIMutI CAGTG 2 cut(s) 153, 175
Cac8I GCNNGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 180
Csp6I GTAC 1 cut(s) 292
CspAI ACCGGT 1 cut(s) 180
CviAII CATG 3 cut(s) 145, 208, 223
CviJI RGCY 6 cut(s) 29, 46, 221, 230, 266, 288
CviKI_1 RGCY 6 cut(s) 29, 46, 221, 230, 266, 288
CviQI GTAC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 148, 211, 226
FaiI YATR 3 cut(s) 146, 209, 224
FatI CATG 3 cut(s) 144, 207, 222
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 3 cut(s) 46, 221, 266
HapII CCGG 1 cut(s) 181
Hin1II CATG 3 cut(s) 148, 211, 226
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 173, 252
Hpy8I GTNNAC 2 cut(s) 173, 252
Hpy99I CGWCG 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
Hsp92II CATG 3 cut(s) 148, 211, 226
LpnPI CCDG 3 cut(s) 45, 72, 194
MlsI TGGCCA 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 3 cut(s) 97, 116, 256
Mox20I TGGCCA 1 cut(s) 221
MroXI GAANNNNTTC 1 cut(s) 182
MscI TGGCCA 1 cut(s) 221
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 227
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 3 cut(s) 148, 211, 226
NspV TTCGAA 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 182
PflMI CCANNNNNTGG 2 cut(s) 59, 196
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 1 cut(s) 229
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SatI GCNGC 1 cut(s) 228
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 60
SetI ASST 2 cut(s) 140, 290
SfuI TTCGAA 1 cut(s) 233
SsiI CCGC 2 cut(s) 56, 227
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 222
TaqI TCGA 2 cut(s) 75, 233
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 230
TscAI CASTG 2 cut(s) 160, 175
TspDTI ATGAA 2 cut(s) 133, 224
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 2 cut(s) 160, 175
Van91I CCANNNNNTGG 2 cut(s) 59, 196
XmnI GAANNNNTTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.