Rroxscaffold_2G00131590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012070
Physical Location & Seq
Forward (+)
68285909 .. 68288834
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131590.1

Sequence Viewer

Length: 384 bp
ATGGAGGCAACCGAGTTCGTCAACTGTCAAGTGAAGACGAGATCATCGTCCTGGCGACTTAGGAGTCTTTACCCCGAAAGGAGCACGAAGCCGTTCCAAGCCGAGCCACCCGGTTGGCTTATAATAGGGACAAAAGTGACCTGGTTGCGGTGCGCTAGGGTTTTAGAGAGATGGGAGGTAAAAGAATTAGACGGAGAGCCAAGAACTACGAGAGAGGCCCACGACGATTACGGTAGGCCGCCGCCGCCACTCGATCGTTCTCAAATCGACACTTTGCCCTCTAAACTCTTCAAAATCCTCTCTTACTCAACTCCCCAAGCAAAAGCAATAAGACATGGGAAAGACGGCCTGCGGGATAAAGGAACCAAAGATGACAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.64

Weight (kDa)

9.39

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 122
AasI GACNNNNNNGTC 1 cut(s) 63
AciI CCGC 5 cut(s) 148, 239, 242, 245, 352
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 2 cut(s) 50, 140
Alw21I GWGCWC 1 cut(s) 86
AoxI GGCC 3 cut(s) 216, 236, 346
Asp700I GAANNNNTTC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 86
BccI CCATC 1 cut(s) 165
BceAI ACGGC 2 cut(s) 76, 361
BciT130I CCWGG 2 cut(s) 52, 142
BcnI CCSGG 1 cut(s) 111
BfaI CTAG 1 cut(s) 156
BisI GCNGC 3 cut(s) 239, 242, 245
BlsI GCNGC 3 cut(s) 240, 243, 246
Bme1390I CCNGG 3 cut(s) 52, 111, 142
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 3 cut(s) 52, 111, 142
BpiI GAAGAC 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 52, 142
BseLI CCNNNNNNNGG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 3 cut(s) 218, 238, 348
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 3 cut(s) 218, 238, 348
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 41, 253
BspACI CCGC 5 cut(s) 148, 239, 242, 245, 352
BspANI GGCC 3 cut(s) 218, 238, 348
BspLI GGNNCC 1 cut(s) 364
BssMI GATC 2 cut(s) 41, 253
Bst2UI CCWGG 2 cut(s) 52, 142
Bst4CI ACNGT 2 cut(s) 26, 233
Bst6I CTCTTC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 59, 381
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 2 cut(s) 44, 256
BstMBI GATC 2 cut(s) 41, 253
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 2 cut(s) 52, 142
BstSCI CCNGG 3 cut(s) 50, 109, 140
BstV2I GAAGAC 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 114
BsuRI GGCC 3 cut(s) 218, 238, 348
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 217
CsiI ACCWGGT 1 cut(s) 140
CviAII CATG 1 cut(s) 335
CviJI RGCY 8 cut(s) 91, 101, 106, 118, 199, 218, 238, 348
CviKI_1 RGCY 8 cut(s) 91, 101, 106, 118, 199, 218, 238, 348
DdeI CTNAG 2 cut(s) 59, 381
DpnI GATC 2 cut(s) 43, 255
DpnII GATC 2 cut(s) 41, 253
DrdI GACNNNNNNGTC 1 cut(s) 63
DseDI GACNNNNNNGTC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 50, 140
FaeI CATG 1 cut(s) 338
FaiI YATR 2 cut(s) 122, 336
FaqI GGGAC 1 cut(s) 142
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 345
Fnu4HI GCNGC 3 cut(s) 239, 242, 245
Fsp4HI GCNGC 3 cut(s) 239, 242, 245
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 154
GluI GCNGC 3 cut(s) 239, 242, 245
HaeIII GGCC 3 cut(s) 218, 238, 348
HapII CCGG 1 cut(s) 111
HhaI GCGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 26, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 2 cut(s) 59, 381
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 41, 253
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 6 cut(s) 37, 64, 124, 127, 154, 362
MabI ACCWGGT 1 cut(s) 140
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 136
MalI GATC 2 cut(s) 43, 255
MboI GATC 2 cut(s) 41, 253
MboII GAAGA 2 cut(s) 46, 280
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 2 cut(s) 185, 376
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 4 cut(s) 169, 208, 289, 308
MroXI GAANNNNTTC 1 cut(s) 92
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 3 cut(s) 52, 111, 142
MvaI CCWGG 2 cut(s) 52, 142
MwoI GCNNNNNNNGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 111
NdeII GATC 2 cut(s) 41, 253
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 364
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 240, 243, 246
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PsiI TTATAA 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 50, 140
PspGI CCWGG 2 cut(s) 50, 140
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 217
PvuI CGATCG 1 cut(s) 256
SatI GCNGC 3 cut(s) 239, 242, 245
Sau3AI GATC 2 cut(s) 41, 253
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 3 cut(s) 52, 111, 142
SduI GDGCHC 1 cut(s) 86
SetI ASST 2 cut(s) 143, 180
SexAI ACCWGGT 1 cut(s) 140
Sse9I AATT 2 cut(s) 185, 376
SsiI CCGC 5 cut(s) 148, 239, 242, 245, 352
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 50, 109, 140
TaaI ACNGT 2 cut(s) 26, 233
TaqI TCGA 2 cut(s) 252, 267
TasI AATT 2 cut(s) 185, 376
TauI GCSGC 3 cut(s) 241, 244, 247
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 92
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.