MD02G1199700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012070
Physical Location & Seq
Forward (+)
19650735 .. 19652421
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1199700.v1.1.491

Sequence Viewer

Length: 678 bp
ATGGGTGGTAAAGGAATCAGACGGAGAGAGAAGAATTACAGAGCAGCGCACGGTGGAGGATACACCAGGCTGCCGCCGCCACCTGATTACTCTAAAGCCGACGCCTTGCCCTCTAAGCTTCGCAAACTCCTCGCCTTCACTGCTTCTCATGATCCCAAAGACGATTTGAAGCTCTCAAAAGCTGCTGAAGAAAAAAAGAGGAAAAATGGAGTTGGTGCTGCTGAACCAAAGCCCGAGGATGAAGTCGACTTTGAAACTGGATTTGATGACGAGGGTAATGCTGAGGATTCGGAACATCAACATACGGATGAGAAGAAAAAGAAGAAAAGAAAGAGAAAGCAAGTACAGGACCTTCGGTTTGAAAATGTAGGATTGGAGCAATCAGGAACTCGGCTAAAAAGAAAGGAGCGTAAGAAAAAGTACTTGGAAGCAAAGAAAAACAAAAAGAAGGGGGGCAAGCCAGAAGAGAATGAAGGCTTCCCTGGACGTGAGGAGATCAGATTTGGAGACGTGGTTCAAGCTCCCCCAAAGTTGGTTGTTCCTAAGGCGTTGAAGTATGTACAAGATGCTTCTAAGGAGAGGGTTCGAGTCAAGGCAATTGAGGCATACAGGCAGCGCAAAGGATGGAACGCAAGGCCGGGGATTCAACTTCCTCCTCCTGTGACTGGATCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.47

Weight (kDa)

9.91

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 246
AciI CCGC 2 cut(s) 74, 77
AclWI GGATC 2 cut(s) 146, 676
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 3 cut(s) 345, 422, 561
AfiI CCNNNNNNNGG 2 cut(s) 532, 665
AgsI TTSAA 6 cut(s) 169, 254, 362, 518, 553, 647
AjiI CACGTC 2 cut(s) 488, 511
AjnI CCWGG 2 cut(s) 65, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 4 cut(s) 118, 172, 182, 521
AluI AGCT 4 cut(s) 118, 172, 182, 521
Alw26I GTCTC 1 cut(s) 501
AlwI GGATC 2 cut(s) 146, 676
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 635
ApeKI GCWGC 5 cut(s) 44, 70, 182, 218, 613
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspLEI GCGC 2 cut(s) 49, 618
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 639
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 543
BarI GAAGNNNNNNTAC 2 cut(s) 336, 368
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 5 cut(s) 56, 57, 169, 205, 625
BccI CCATC 1 cut(s) 618
BcgI CGANNNNNNTGC 4 cut(s) 112, 146, 260, 294
BciT130I CCWGG 2 cut(s) 67, 483
BciVI GTATCC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 501
BfuI GTATCC 1 cut(s) 53
BisI GCNGC 7 cut(s) 45, 71, 74, 77, 183, 219, 614
BlsI GCNGC 7 cut(s) 46, 72, 75, 78, 184, 220, 615
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 3 cut(s) 67, 483, 639
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 2 cut(s) 488, 511
BmgT120I GGNCC 1 cut(s) 349
BmrFI CCNGG 3 cut(s) 67, 483, 639
BmsI GCATC 1 cut(s) 556
Bpu10I CCTNAGC 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 639
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 3 cut(s) 234, 481, 638
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 532, 665
Bse1I ACTGG 2 cut(s) 262, 670
Bse21I CCTNAGG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 67, 483
BseDI CCNNGG 3 cut(s) 234, 481, 638
BseGI GGATG 3 cut(s) 244, 313, 629
BseLI CCNNNNNNNGG 2 cut(s) 532, 665
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 262, 670
BseRI GAGGAG 3 cut(s) 119, 506, 645
BseXI GCAGC 5 cut(s) 56, 57, 169, 205, 625
BshFI GGCC 1 cut(s) 637
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 638
BslI CCNNNNNNNGG 2 cut(s) 532, 665
BsmAI GTCTC 1 cut(s) 501
BsmBI CGTCTC 1 cut(s) 501
BsnI GGCC 1 cut(s) 637
BsoBI CYCGRG 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 3 cut(s) 151, 495, 668
BspACI CCGC 2 cut(s) 74, 77
BspANI GGCC 1 cut(s) 637
BspCNI CTCAG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 148
BspPI GGATC 2 cut(s) 146, 676
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 2 cut(s) 262, 670
BssECI CCNNGG 3 cut(s) 234, 481, 638
BssMI GATC 3 cut(s) 151, 495, 668
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 2 cut(s) 67, 483
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 4 cut(s) 114, 282, 543, 573
BstF5I GGATG 3 cut(s) 244, 313, 629
BstHHI GCGC 2 cut(s) 49, 618
BstKTI GATC 3 cut(s) 154, 498, 671
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 151, 495, 668
BstMWI GCNNNNNNNGC 4 cut(s) 76, 115, 140, 602
BstNI CCWGG 2 cut(s) 67, 483
BstSCI CCNGG 3 cut(s) 65, 481, 637
BstV1I GCAGC 5 cut(s) 56, 57, 169, 205, 625
Bsu36I CCTNAGG 1 cut(s) 543
BsuI GTATCC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 637
BtrI CACGTC 2 cut(s) 488, 511
BtsCI GGATG 3 cut(s) 244, 313, 629
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 458
CciI TCATGA 1 cut(s) 148
CfoI GCGC 2 cut(s) 49, 618
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 1 cut(s) 110
Csp6I GTAC 3 cut(s) 344, 421, 560
CviAII CATG 1 cut(s) 149
CviQI GTAC 3 cut(s) 344, 421, 560
DdeI CTNAG 4 cut(s) 114, 282, 543, 573
DpnI GATC 3 cut(s) 153, 497, 670
DpnII GATC 3 cut(s) 151, 495, 668
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 65, 481
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 1 cut(s) 152
FaiI YATR 4 cut(s) 150, 303, 558, 607
FatI CATG 1 cut(s) 148
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 7 cut(s) 45, 71, 74, 77, 183, 219, 614
FokI GGATG 3 cut(s) 251, 320, 636
Fsp4HI GCNGC 7 cut(s) 45, 71, 74, 77, 183, 219, 614
GlaI GCGC 2 cut(s) 48, 617
GluI GCNGC 7 cut(s) 45, 71, 74, 77, 183, 219, 614
HaeIII GGCC 1 cut(s) 637
HapII CCGG 1 cut(s) 638
HgaI GACGC 1 cut(s) 110
HhaI GCGC 2 cut(s) 49, 618
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 2 cut(s) 47, 616
HinP1I GCGC 2 cut(s) 47, 616
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 4 cut(s) 15, 287, 588, 643
HpaII CCGG 1 cut(s) 638
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 20, 292, 500
Hpy188III TCNNGA 2 cut(s) 149, 384
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 145, 362, 442, 467
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 2 cut(s) 487, 510
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 115, 140, 602
HpyF3I CTNAG 4 cut(s) 114, 282, 543, 573
HpySE526I ACGT 2 cut(s) 487, 510
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 2 cut(s) 47, 616
Kzo9I GATC 3 cut(s) 151, 495, 668
LmnI GCTCC 3 cut(s) 376, 406, 526
Lsp1109I GCAGC 5 cut(s) 56, 57, 169, 205, 625
LweI GCATC 1 cut(s) 556
MaeII ACGT 2 cut(s) 487, 510
MaeIII GTNAC 1 cut(s) 661
MalI GATC 3 cut(s) 153, 497, 670
MboI GATC 3 cut(s) 151, 495, 668
MboII GAAGA 5 cut(s) 43, 200, 325, 334, 476
MfeI CAATTG 1 cut(s) 597
MluCI AATT 2 cut(s) 34, 597
MlyI GAGTC 1 cut(s) 597
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 3 cut(s) 67, 483, 639
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 2 cut(s) 67, 483
MwoI GCNNNNNNNGC 4 cut(s) 76, 115, 140, 602
NciI CCSGG 1 cut(s) 639
NdeII GATC 3 cut(s) 151, 495, 668
NlaIII CATG 1 cut(s) 152
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 661
PagI TCATGA 1 cut(s) 148
PfeI GAWTC 3 cut(s) 15, 287, 643
PkrI GCNGC 7 cut(s) 46, 72, 75, 78, 184, 220, 615
PleI GAGTC 1 cut(s) 596
PpsI GAGTC 1 cut(s) 596
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 2 cut(s) 65, 481
PspGI CCWGG 2 cut(s) 65, 481
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
RsaI GTAC 3 cut(s) 345, 422, 561
RsaNI GTAC 3 cut(s) 344, 421, 560
RseI CAYNNNNRTG 1 cut(s) 306
SalI GTCGAC 1 cut(s) 245
SatI GCNGC 7 cut(s) 45, 71, 74, 77, 183, 219, 614
Sau3AI GATC 3 cut(s) 151, 495, 668
Sau96I GGNCC 1 cut(s) 349
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 1 cut(s) 597
ScrFI CCNGG 3 cut(s) 67, 483, 639
SetI ASST 8 cut(s) 85, 120, 174, 184, 354, 490, 513, 523
SfaNI GCATC 1 cut(s) 556
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 2 cut(s) 34, 597
SsiI CCGC 2 cut(s) 74, 77
StyD4I CCNGG 3 cut(s) 65, 481, 637
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 2 cut(s) 490, 513
TaqI TCGA 2 cut(s) 246, 586
TasI AATT 2 cut(s) 34, 597
TatI WGTACW 3 cut(s) 343, 420, 559
TauI GCSGC 2 cut(s) 76, 79
TfiI GAWTC 3 cut(s) 15, 287, 643
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 5 cut(s) 44, 70, 182, 218, 613
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 2 cut(s) 255, 486
TspGWI ACGGA 2 cut(s) 37, 320
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 246
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.