Rorug01G0216700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012070
Physical Location & Seq
Reverse (-)
30976584 .. 30983920
7337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0216700.1

Sequence Viewer

Length: 2511 bp
ATGTTAGAGGATGCCATTGCTGAGGCTTGTCCTGGATGCTGTGGTAATTGCAGTTGCAAAGCATGTTTGTGTGCAGCTTCTAGAAATTTGAAGAAACAGCCGGAGTTGAATATTAGCAAAGAGGAAAAACTTGAGCACTCTAAGTATTTGCTTCAAGCATTGCTTCCACTATTAAAACGACTTAATAATGAGCAAGTGATTGAGATGGAGATGGAGGCTAGGAGACAAGGGCTATCTGTTTCGGAGCGAAAGATCCAAAGGTCAAACTGCTCTTATGATGAACGTGTGAATTGTAACAACTGCAAAGCTTCAATTGTTGATTTGTATAGAAGCTGCAATTTATGCTCATATGATCTCTGCCTAACGTGTTGCCGGGAGAGTCGAGATCGACACCTGGACGGAGGTGGGAAGGAAGTGACTATGGTGTGTATCAATCAGGACCTAGAACATTTGCATGGTGGAAAGGGGAACATAGCGGAACTACTGTTTGAACCTAGCCCCAAGTGTCATGTAAGGTTAAAATCTGAATGGAAATCCAATGAAGATGGTAGCATCCTTTGCCCTCCAGAGGACAGGGATGGCTGTGGTCATGGTCATCTGGAATTGAGATGCATGTCTTTTGAGAATAAGGTCGGTGAGTTGGTACAGAAAGCAGAAGAGATGGCTGAAATTTACAACCTTATGCATGCGGCAGAAACTTCTGCACAGTGGTGTTCATGTTTCAATTCTTTGGATGTTTTTGATTCAATCAGCAACACCAAAAAGTTAAGGAAAGGAGATTCTCGAGAGGATTTTGATGACAACTATTTGTACTGCCCAAGAGCTGGAAATATCCAACATGAGGATCTTAAGCATTTCCAATGGCATTGGCTCAGGGGTGAGCCTGTGATTGTTAGCAATGTAACTGAAACTACATCAGGTATGTGGCCTGCTTGTCGTCAGATGCAACAGACTATGCACGGTAAATCTTTAACAATCAAGGCCATTGATTGCCTAGATTGGTGCAAGCTAGAGAAGTTGAGAAGATATATTGGTACTGGAGTTGTCATCAATTCAGGTGGATATTATGGTGATGAAAATAGTTTATTACATTCTTGTGCAGATGTGCAAGATATCAGTATCCATGAATTTTTTACTGGATATGCAAAGGGGTGGTTTGATTGGAAAATGGGGCCTCAAAGGCTAAAACTGAGAGATTGTGCTCCAGCTAGTTTGATTGAGGAGCACCTTCCTCATCATGGTGCTGAGTTTATCTATGGCTTGCCATTTAAGGAATATACTCATCCTCACAGTGGGTTTCTTAATCTTGCTGCTAAATTCCCTGAGGAGTGTGGGAAGCCTGCTTATGGCGTTGGGCAGGAGCTTGGACATGAAGATTCTGTGACTAAGCTTCATTGCAATATATCTGATGTGGTGAATGTTTTGACACATACTGCTGAAGTGACCCCTAATTCTCAACAACTTCTTACAGTAGAAAGGCTGAAAAAAGTGCAGATTGAGCAAGATAGAAGAGAAAATTTAGGAAACTGTCACTCTGCGGATGGCAATGTTGATGGTAAAATGCCTAGCGTTGGGTTGTGTCTTAAACAGTTTTATATTCAAGGTGGCAATCAAAACAGGGATGCTGCTTTCCAAAAACTAACACTACCAACTGTTCAATCTGACGGTGATACTGGTAATTCTTGTTTGAAAGGTGGAAATCTTTCAAACTATTCCGGATCTGAAAATAATGTAGACGGTGGTGCTTTATGGGACATTTTTCAGAGACAGGATGTTCCAAAACTACAGGAATATCTCAGGAAGCACTTCAACGAGTTCAGGCACACATACTGCTGTCCGTCCCAACAGATTATTCATCCCATTCACGACCAGAACTTTTACCTGACTCGGGAGCACAAAAGGAAGCTGAAGGAGGAATGTGGAATCGAACCATGGACATGTATCCAGAAACTTGGGGATGCTATCTTTGTTCCTGCAGGCTGTCCATATCAAGTCAGAAACTTGAAGTCATGCATTAAAGTTGCAGTTCAATTTGTCTCACCTGAAAGTGTTGGCGACTGCCTTCGTTTGACTGAAGAATGCCGCACACTTCCAAAAGATCACGGGGCTAAAGAGGATAAATTGGAGGTGAAAAAAATGATTGTGCATGCTATGCGGGAAGCTGTGGATATTTTGGATCAGAGTGTGAGGGTTAGACAAGCAAAGAGAGAGGAAGTTGGACAAAGACAGCAAGTACAGAGCAGGGAGGATGGGGAAGTTCAAGCTGATGAGGAGCAGCCATCAATGTCATCACATCCAGCACAGTTCCCTCTTGATCTTGTTACAGCAATGCAGCGGCTAGATGACCTCGTGGAGCGCTTTTCGGATTTTGAACACTTGGAAGAGAGAGATAGAACAATGAATCCGGAATACCAGTTCTTATGTTCAGAGTTCATGAATTTATCTTCACATCTTGGTTATGCAACTCAGGTGAAAGAGTCTGCCATTCCACCATCCTATCAGCAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

836

Amino Acids

94.91

Weight (kDa)

5.81

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 580 - 678 2.6e-13 JmjC domain, hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 824
AccI GTMKAC 1 cut(s) 1734
AccIII TCCGGA 2 cut(s) 1715, 2404
AciI CCGC 6 cut(s) 476, 689, 1538, 2083, 2155, 2335
AclWI GGATC 4 cut(s) 247, 852, 1726, 2184
AcsI RAATTY 6 cut(s) 85, 669, 1127, 1316, 1516, 2437
AcuI CTGAAG 3 cut(s) 1458, 1928, 2094
AfaI GTAC 4 cut(s) 645, 812, 1036, 2235
AfeI AGCGCT 1 cut(s) 2357
AfiI CCNNNNNNNGG 8 cut(s) 568, 824, 841, 1238, 1292, 1346, 1571, 1888
AflII CTTAAG 1 cut(s) 848
AflIII ACRYGT 3 cut(s) 283, 365, 1937
AjnI CCWGG 2 cut(s) 31, 393
AjuI GAANNNNNNNTTGG 2 cut(s) 1836, 1868
AleI CACNNNNGTG 1 cut(s) 709
AloI GAACNNNNNNTCC 4 cut(s) 2386, 2399, 2418, 2431
Alw21I GWGCWC 4 cut(s) 138, 1204, 1227, 1896
Alw26I GTCTC 3 cut(s) 217, 1759, 2041
AlwI GGATC 4 cut(s) 247, 852, 1726, 2184
Ama87I CYCGRG 2 cut(s) 783, 1887
Aor13HI TCCGGA 2 cut(s) 1715, 2404
Aor51HI AGCGCT 1 cut(s) 2357
AoxI GGCC 3 cut(s) 926, 981, 1172
ApeKI GCWGC 6 cut(s) 74, 333, 1310, 1625, 2275, 2332
ApoI RAATTY 6 cut(s) 85, 669, 1127, 1316, 1516, 2437
Asp700I GAANNNNTTC 2 cut(s) 1702, 1805
AspLEI GCGC 1 cut(s) 2358
AspS9I GGNCC 2 cut(s) 439, 1172
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 8 cut(s) 647, 890, 1082, 1426, 1679, 2031, 2140, 2482
AvaI CYCGRG 2 cut(s) 783, 1887
AvaII GGWCC 1 cut(s) 439
AxyI CCTNAGG 1 cut(s) 1323
BaeI ACNNNNGTAYC 2 cut(s) 1026, 1059
BauI CACGAG 1 cut(s) 2348
Bbv12I GWGCWC 4 cut(s) 138, 1204, 1227, 1896
BbvCI CCTCAGC 1 cut(s) 21
BbvI GCAGC 6 cut(s) 86, 320, 1297, 1612, 2287, 2344
BciT130I CCWGG 2 cut(s) 33, 395
BciVI GTATCC 2 cut(s) 1130, 1952
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 3 cut(s) 217, 1759, 2041
BfaI CTAG 9 cut(s) 81, 219, 443, 495, 995, 1010, 1209, 1566, 2339
BfmI CTRYAG 2 cut(s) 1784, 1974
BfoI RGCGCY 1 cut(s) 2359
BfrI CTTAAG 1 cut(s) 848
BfuI GTATCC 2 cut(s) 1130, 1952
BglI GCCNNNNNGGC 1 cut(s) 1180
BisI GCNGC 9 cut(s) 75, 334, 690, 1311, 1626, 2083, 2276, 2333, 2336
BlsI GCNGC 9 cut(s) 76, 335, 691, 1312, 1627, 2084, 2277, 2334, 2337
Bme1390I CCNGG 3 cut(s) 33, 374, 395
Bme18I GGWCC 1 cut(s) 439
BmeT110I CYCGRG 2 cut(s) 783, 1887
BmgT120I GGNCC 2 cut(s) 439, 1172
BmiI GGNNCC 1 cut(s) 1173
BmrFI CCNGG 3 cut(s) 33, 374, 395
BmsI GCATC 6 cut(s) 26, 561, 599, 933, 1612, 1948
BpmI CTGGAG 3 cut(s) 549, 1059, 1188
Bpu10I CCTNAGC 2 cut(s) 21, 872
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 1931
BsaWI WCCGGW 2 cut(s) 1715, 2404
Bsc4I CCNNNNNNNGG 8 cut(s) 568, 824, 841, 1238, 1292, 1346, 1571, 1888
Bse1I ACTGG 4 cut(s) 1042, 1141, 1678, 2413
Bse21I CCTNAGG 1 cut(s) 1323
Bse3DI GCAATG 6 cut(s) 15, 158, 904, 1393, 1552, 2334
BseAI TCCGGA 2 cut(s) 1715, 2404
BseBI CCWGG 2 cut(s) 33, 395
BseDI CCNNGG 1 cut(s) 1931
BseLI CCNNNNNNNGG 8 cut(s) 568, 824, 841, 1238, 1292, 1346, 1571, 1888
BseMI GCAATG 6 cut(s) 15, 158, 904, 1393, 1552, 2334
BseMII CTCAG 7 cut(s) 12, 886, 1181, 1236, 1314, 1810, 2480
BseNI ACTGG 4 cut(s) 1042, 1141, 1678, 2413
BseRI GAGGAG 3 cut(s) 1235, 1340, 2285
BseXI GCAGC 6 cut(s) 86, 320, 1297, 1612, 2287, 2344
BsgI GTGCAG 4 cut(s) 93, 687, 1119, 1511
BshFI GGCC 3 cut(s) 928, 983, 1174
BsiHKAI GWGCWC 4 cut(s) 138, 1204, 1227, 1896
BsiHKCI CYCGRG 2 cut(s) 783, 1887
BsiSI CCGG 4 cut(s) 101, 373, 1716, 2405
BslFI GGGAC 2 cut(s) 1766, 1825
BslI CCNNNNNNNGG 8 cut(s) 568, 824, 841, 1238, 1292, 1346, 1571, 1888
BsmAI GTCTC 3 cut(s) 217, 1759, 2041
BsmFI GGGAC 2 cut(s) 1766, 1825
BsmI GAATGC 1 cut(s) 2084
BsnI GGCC 3 cut(s) 928, 983, 1174
BsoBI CYCGRG 2 cut(s) 783, 1887
Bsp1286I GDGCHC 4 cut(s) 138, 1204, 1227, 1896
Bsp13I TCCGGA 2 cut(s) 1715, 2404
Bsp143I GATC 8 cut(s) 252, 352, 385, 844, 1718, 2098, 2176, 2314
Bsp19I CCATGG 1 cut(s) 1931
BspACI CCGC 6 cut(s) 476, 689, 1538, 2083, 2155, 2335
BspANI GGCC 3 cut(s) 928, 983, 1174
BspCNI CTCAG 7 cut(s) 13, 885, 1182, 1237, 1315, 1809, 2479
BspEI TCCGGA 2 cut(s) 1715, 2404
BspHI TCATGA 1 cut(s) 2433
BspLI GGNNCC 1 cut(s) 1173
BspMAI CTGCAG 1 cut(s) 1978
BspPI GGATC 4 cut(s) 247, 852, 1726, 2184
BspTI CTTAAG 1 cut(s) 848
BsrDI GCAATG 6 cut(s) 15, 158, 904, 1393, 1552, 2334
BsrI ACTGG 4 cut(s) 1042, 1141, 1678, 2413
BssECI CCNNGG 1 cut(s) 1931
BssMI GATC 8 cut(s) 252, 352, 385, 844, 1718, 2098, 2176, 2314
BssSI CACGAG 1 cut(s) 2348
BssT1I CCWWGG 1 cut(s) 1931
Bst2BI CACGAG 1 cut(s) 2348
Bst2UI CCWGG 2 cut(s) 33, 395
Bst6I CTCTTC 3 cut(s) 651, 1504, 2376
BstAFI CTTAAG 1 cut(s) 848
BstAPI GCANNNNNTGC 3 cut(s) 342, 558, 2152
BstC8I GCNNGC 7 cut(s) 687, 930, 1007, 1262, 1341, 1978, 2148
BstDEI CTNAG 9 cut(s) 21, 141, 872, 1190, 1245, 1323, 1386, 1796, 2466
BstDSI CCRYGG 1 cut(s) 1931
BstH2I RGCGCY 1 cut(s) 2359
BstHHI GCGC 1 cut(s) 2358
BstKTI GATC 8 cut(s) 255, 355, 388, 847, 1721, 2101, 2179, 2317
BstMAI GTCTC 3 cut(s) 217, 1759, 2041
BstMBI GATC 8 cut(s) 252, 352, 385, 844, 1718, 2098, 2176, 2314
BstMWI GCNNNNNNNGC 5 cut(s) 342, 558, 1180, 1498, 2152
BstNI CCWGG 2 cut(s) 33, 395
BstNSI RCATGY 5 cut(s) 66, 616, 689, 1941, 2150
BstSCI CCNGG 3 cut(s) 31, 372, 393
BstSFI CTRYAG 2 cut(s) 1784, 1974
BstV1I GCAGC 6 cut(s) 86, 320, 1297, 1612, 2287, 2344
BstX2I RGATCY 3 cut(s) 252, 844, 1718
BstXI CCANNNNNNTGG 1 cut(s) 1952
BstYI RGATCY 3 cut(s) 252, 844, 1718
Bsu36I CCTNAGG 1 cut(s) 1323
BsuI GTATCC 2 cut(s) 1130, 1952
BsuRI GGCC 3 cut(s) 928, 983, 1174
BtgI CCRYGG 1 cut(s) 1931
BtsIMutI CAGTG 2 cut(s) 713, 1297
Cac8I GCNNGC 7 cut(s) 687, 930, 1007, 1262, 1341, 1978, 2148
CciI TCATGA 1 cut(s) 2433
CfoI GCGC 1 cut(s) 2358
Cfr13I GGNCC 2 cut(s) 439, 1172
Csp6I GTAC 4 cut(s) 644, 811, 1035, 2234
CspCI CAANNNNNGTGG 2 cut(s) 1039, 1074
CviQI GTAC 4 cut(s) 644, 811, 1035, 2234
DdeI CTNAG 9 cut(s) 21, 141, 872, 1190, 1245, 1323, 1386, 1796, 2466
DpnI GATC 8 cut(s) 254, 354, 387, 846, 1720, 2100, 2178, 2316
DpnII GATC 8 cut(s) 252, 352, 385, 844, 1718, 2098, 2176, 2314
Eam1104I CTCTTC 3 cut(s) 651, 1504, 2376
EarI CTCTTC 3 cut(s) 651, 1504, 2376
Eco130I CCWWGG 1 cut(s) 1931
Eco32I GATATC 1 cut(s) 1114
Eco47I GGWCC 1 cut(s) 439
Eco47III AGCGCT 1 cut(s) 2357
Eco57I CTGAAG 3 cut(s) 1458, 1928, 2094
Eco81I CCTNAGG 1 cut(s) 1323
Eco88I CYCGRG 2 cut(s) 783, 1887
EcoO109I RGGNCCY 2 cut(s) 439, 1172
EcoRII CCWGG 2 cut(s) 31, 393
EcoRV GATATC 1 cut(s) 1114
EcoT14I CCWWGG 1 cut(s) 1931
EcoT22I ATGCAT 3 cut(s) 614, 687, 2015
ErhI CCWWGG 1 cut(s) 1931
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 2 cut(s) 1766, 1825
FauI CCCGC 1 cut(s) 2148
FauNDI CATATG 1 cut(s) 349
FblI GTMKAC 1 cut(s) 1734
Fnu4HI GCNGC 9 cut(s) 75, 334, 690, 1311, 1626, 2083, 2276, 2333, 2336
Fsp4HI GCNGC 9 cut(s) 75, 334, 690, 1311, 1626, 2083, 2276, 2333, 2336
FspBI CTAG 9 cut(s) 81, 219, 443, 495, 995, 1010, 1209, 1566, 2339
GlaI GCGC 1 cut(s) 2357
GluI GCNGC 9 cut(s) 75, 334, 690, 1311, 1626, 2083, 2276, 2333, 2336
GsuI CTGGAG 3 cut(s) 549, 1059, 1188
HaeII RGCGCY 1 cut(s) 2359
HaeIII GGCC 3 cut(s) 928, 983, 1174
HapII CCGG 4 cut(s) 101, 373, 1716, 2405
HhaI GCGC 1 cut(s) 2358
Hin6I GCGC 1 cut(s) 2356
HinP1I GCGC 1 cut(s) 2356
HindIII AAGCTT 2 cut(s) 306, 1388
HinfI GANTC 8 cut(s) 379, 743, 779, 1376, 1885, 1923, 2401, 2477
HpaII CCGG 4 cut(s) 101, 373, 1716, 2405
HphI GGTGA 8 cut(s) 647, 890, 1082, 1426, 1679, 2031, 2140, 2482
Hpy166II GTNNAC 1 cut(s) 1735
Hpy8I GTNNAC 1 cut(s) 1735
HpyAV CCTTC 4 cut(s) 403, 1238, 1903, 2072
HpyCH4IV ACGT 2 cut(s) 283, 365
HpyF10VI GCNNNNNNNGC 5 cut(s) 342, 558, 1180, 1498, 2152
HpyF3I CTNAG 9 cut(s) 21, 141, 872, 1190, 1245, 1323, 1386, 1796, 2466
HpySE526I ACGT 2 cut(s) 283, 365
HspAI GCGC 1 cut(s) 2356
Kpn2I TCCGGA 2 cut(s) 1715, 2404
Kzo9I GATC 8 cut(s) 252, 352, 385, 844, 1718, 2098, 2176, 2314
LmnI GCTCC 7 cut(s) 244, 1207, 1222, 1360, 1891, 2272, 2353
Lsp1109I GCAGC 6 cut(s) 86, 320, 1297, 1612, 2287, 2344
LweI GCATC 6 cut(s) 26, 561, 599, 933, 1612, 1948
MaeI CTAG 9 cut(s) 81, 219, 443, 495, 995, 1010, 1209, 1566, 2339
MaeII ACGT 2 cut(s) 283, 365
MaeIII GTNAC 7 cut(s) 293, 415, 901, 1381, 1441, 1529, 2320
MalI GATC 8 cut(s) 254, 354, 387, 846, 1720, 2100, 2178, 2316
MboI GATC 8 cut(s) 252, 352, 385, 844, 1718, 2098, 2176, 2314
MboII GAAGA 9 cut(s) 103, 554, 668, 1035, 1385, 1521, 2087, 2393, 2436
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 3 cut(s) 252, 844, 1718
MhlI GDGCHC 4 cut(s) 138, 1204, 1227, 1896
MlyI GAGTC 3 cut(s) 388, 1879, 2486
MmeI TCCRAC 2 cut(s) 859, 2197
Mph1103I ATGCAT 3 cut(s) 614, 687, 2015
MroI TCCGGA 2 cut(s) 1715, 2404
MroXI GAANNNNTTC 2 cut(s) 1702, 1805
MslI CAYNNNNRTG 6 cut(s) 67, 453, 709, 1095, 1239, 1936
MspA1I CMGCKG 1 cut(s) 2335
MspCI CTTAAG 1 cut(s) 848
MspI CCGG 4 cut(s) 101, 373, 1716, 2405
MspR9I CCNGG 3 cut(s) 33, 374, 395
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 2084
MvaI CCWGG 2 cut(s) 33, 395
MwoI GCNNNNNNNGC 5 cut(s) 342, 558, 1180, 1498, 2152
NciI CCSGG 1 cut(s) 374
NcoI CCATGG 1 cut(s) 1931
NdeI CATATG 1 cut(s) 349
NdeII GATC 8 cut(s) 252, 352, 385, 844, 1718, 2098, 2176, 2314
NlaIV GGNNCC 1 cut(s) 1173
NmuCI GTSAC 4 cut(s) 415, 1381, 1441, 1529
NsiI ATGCAT 3 cut(s) 614, 687, 2015
NspI RCATGY 5 cut(s) 66, 616, 689, 1941, 2150
OliI CACNNNNGTG 1 cut(s) 709
PaeI GCATGC 2 cut(s) 689, 2150
PaeR7I CTCGAG 1 cut(s) 783
PagI TCATGA 1 cut(s) 2433
PciI ACATGT 1 cut(s) 1937
PctI GAATGC 1 cut(s) 2084
PdmI GAANNNNTTC 2 cut(s) 1702, 1805
PfeI GAWTC 5 cut(s) 743, 779, 1376, 1923, 2401
PflMI CCANNNNNTGG 1 cut(s) 824
PfoI TCCNGGA 1 cut(s) 31
PkrI GCNGC 9 cut(s) 76, 335, 691, 1312, 1627, 2084, 2277, 2334, 2337
PleI GAGTC 3 cut(s) 387, 1879, 2485
PpsI GAGTC 3 cut(s) 387, 1879, 2485
PpuMI RGGWCCY 1 cut(s) 439
PscI ACATGT 1 cut(s) 1937
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 31, 393
PspGI CCWGG 2 cut(s) 31, 393
PspN4I GGNNCC 1 cut(s) 1173
PspPI GGNCC 2 cut(s) 439, 1172
PspPPI RGGWCCY 1 cut(s) 439
PstI CTGCAG 1 cut(s) 1978
PsuI RGATCY 3 cut(s) 252, 844, 1718
RsaI GTAC 4 cut(s) 645, 812, 1036, 2235
RsaNI GTAC 4 cut(s) 644, 811, 1035, 2234
RseI CAYNNNNRTG 6 cut(s) 67, 453, 709, 1095, 1239, 1936
SatI GCNGC 9 cut(s) 75, 334, 690, 1311, 1626, 2083, 2276, 2333, 2336
Sau3AI GATC 8 cut(s) 252, 352, 385, 844, 1718, 2098, 2176, 2314
Sau96I GGNCC 2 cut(s) 439, 1172
SbfI CCTGCAGG 1 cut(s) 1978
SchI GAGTC 3 cut(s) 388, 1879, 2486
ScrFI CCNGG 3 cut(s) 33, 374, 395
SdaI CCTGCAGG 1 cut(s) 1978
SduI GDGCHC 4 cut(s) 138, 1204, 1227, 1896
SfaNI GCATC 6 cut(s) 26, 561, 599, 933, 1612, 1948
SfcI CTRYAG 2 cut(s) 1784, 1974
Sfr274I CTCGAG 1 cut(s) 783
SinI GGWCC 1 cut(s) 439
SlaI CTCGAG 1 cut(s) 783
SmiMI CAYNNNNRTG 6 cut(s) 67, 453, 709, 1095, 1239, 1936
SmlI CTYRAG 3 cut(s) 131, 783, 848
SmoI CTYRAG 3 cut(s) 131, 783, 848
SphI GCATGC 2 cut(s) 689, 2150
Sse8387I CCTGCAGG 1 cut(s) 1978
SsiI CCGC 6 cut(s) 476, 689, 1538, 2083, 2155, 2335
SspI AATATT 1 cut(s) 112
SspMI CTAG 9 cut(s) 81, 219, 443, 495, 995, 1010, 1209, 1566, 2339
StyD4I CCNGG 3 cut(s) 31, 372, 393
StyI CCWWGG 1 cut(s) 1931
TaiI ACGT 2 cut(s) 286, 368
TaqI TCGA 4 cut(s) 382, 388, 784, 1926
TatI WGTACW 2 cut(s) 810, 2233
TauI GCSGC 3 cut(s) 692, 2085, 2338
TfiI GAWTC 5 cut(s) 743, 779, 1376, 1923, 2401
TscAI CASTG 2 cut(s) 713, 1297
TseFI GTSAC 4 cut(s) 415, 1381, 1441, 1529
TseI GCWGC 6 cut(s) 74, 333, 1310, 1625, 2275, 2332
Tsp45I GTSAC 4 cut(s) 415, 1381, 1441, 1529
TspGWI ACGGA 2 cut(s) 414, 1827
TspRI CASTG 2 cut(s) 713, 1297
Van91I CCANNNNNTGG 1 cut(s) 824
Vha464I CTTAAG 1 cut(s) 848
VpaK11BI GGWCC 1 cut(s) 439
XapI RAATTY 6 cut(s) 85, 669, 1127, 1316, 1516, 2437
XbaI TCTAGA 1 cut(s) 80
XceI RCATGY 5 cut(s) 66, 616, 689, 1941, 2150
XhoI CTCGAG 1 cut(s) 783
XmiI GTMKAC 1 cut(s) 1734
XmnI GAANNNNTTC 2 cut(s) 1702, 1805
XspI CTAG 9 cut(s) 81, 219, 443, 495, 995, 1010, 1209, 1566, 2339
Zsp2I ATGCAT 3 cut(s) 614, 687, 2015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.