Rw1G020090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012070
Physical Location & Seq
Reverse (-)
43497970 .. 43499212
1243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020090.1

Sequence Viewer

Length: 672 bp
ATGGGAGGTAAAGGAATTAGACGGAGAGCCAAGAACTACAGAGAAGCCCACGGCGGTTACAGTAGGCTTCCGCCGCCGCCTGATCGTTCTCAAGTCGACACTTTGCCCTCTAAACTCCGCAAAATCCTCTCCTACTCCACTCCCCAAGGCTCTTTGAAGCTTGCCAAAGATGCTGAGCAGAAGAAGAAGAGAGATGGAGTTGGTGCTGCTCAACCAAAGGATAAGGATGAAGTGGAGGTAGAAGAAGCTAGTATGGAAGATGGGGATAATGCTGAGAATGTTGCACCCCAGCATTCGGATGAGAAGAAAAAGAAGAAACGAAAGCGGAAGCAAGTGCTTGACCTTCGATTTGAAGCAGAAGCACTGGAGCAATCGGGAGGCCGTCTGAAAAGAAAGGAGCGCAAGAAAAAGTACTTGGAAACAAAGAAAAACAAAAACAAAAAGGGCAAGAAAGAAGATAATGTAGACGATTTTCCTGGACGTGAGAAGATTAGATTTGGAGAGGTGGTTCAAGCTCCTCCAAAGTTGGTTGCTCCTAAGGCATTTAAGAATGTACAAGATGCTTCGAAGGAGCGGGTTCGGGTCAATGCTATTGAGGCATACAGGCAACGCAAAAAATGGAACTCAAGACCAGGGATTCAGCTCCCTACTCCTGTGACTGCATCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.35

Weight (kDa)

10.11

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012070)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45520
fragaria_vesca FvH4_7g12340
malus_domestica MD02G1199700.v1.1
prunus_persica Prupe.2G148900_v2.0.a1
pyrus_communis pycom02g16370
rosa_chinensis RchiOBHm_Chr1g0351131
rosa_laevigata RLG00000028429
rosa_multiflora Rmu_co8274977.1_g000001 Rmu_co8375399.1_g000001 Rmu_sc0001619.1_g000014
rosa_roxburghii Rroxscaffold_2G00131590 Rroxscaffold_4G00304040
rosa_rugosa Rorug01G0216700
rosa_samantha Rh1AG231100 Rh1BG200900 Rh1CG215000 Rh1DG228400 Rh6CG134600
rosa_wichuraiana Rw1G020090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 574
AccI GTMKAC 2 cut(s) 96, 465
AciI CCGC 7 cut(s) 54, 71, 74, 77, 118, 325, 574
AfaI GTAC 2 cut(s) 413, 555
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 3 cut(s) 157, 353, 512
AjiI CACGTC 1 cut(s) 482
AjnI CCWGG 2 cut(s) 475, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 4 cut(s) 160, 248, 515, 643
AluI AGCT 4 cut(s) 160, 248, 515, 643
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 1 cut(s) 402
AsuII TTCGAA 1 cut(s) 566
AxyI CCTNAGG 1 cut(s) 537
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 188, 254
BceAI ACGGC 2 cut(s) 67, 366
BciT130I CCWGG 2 cut(s) 477, 633
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 37
BisI GCNGC 3 cut(s) 74, 77, 207
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 3 cut(s) 75, 78, 208
BmcAI AGTACT 1 cut(s) 413
Bme1390I CCNGG 2 cut(s) 477, 633
BmgBI CACGTC 1 cut(s) 482
BmrFI CCNGG 2 cut(s) 477, 633
BmsI GCATC 2 cut(s) 160, 550
BpmI CTGGAG 1 cut(s) 386
Bpu1102I GCTNAGC 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 75, 610
BsaJI CCNNGG 3 cut(s) 49, 145, 632
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 369
Bse21I CCTNAGG 1 cut(s) 537
BseBI CCWGG 2 cut(s) 477, 633
BseDI CCNNGG 3 cut(s) 49, 145, 632
BseGI GGATG 3 cut(s) 232, 304, 662
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 2 cut(s) 165, 264
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 1 cut(s) 507
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 288
BshFI GGCC 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 295
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 566
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 174
BspACI CCGC 7 cut(s) 54, 71, 74, 77, 118, 325, 574
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 166, 265
BspT104I TTCGAA 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 574
BsrGI TGTACA 1 cut(s) 553
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 3 cut(s) 49, 145, 632
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 477, 633
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 553
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 3 cut(s) 174, 273, 537
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 232, 304, 662
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 4 cut(s) 73, 170, 539, 596
BstNI CCWGG 2 cut(s) 477, 633
BstSCI CCNGG 2 cut(s) 475, 631
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 193
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 482
BtsCI GGATG 3 cut(s) 232, 304, 662
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 402
Csp6I GTAC 2 cut(s) 412, 554
CviJI RGCY 9 cut(s) 29, 47, 67, 150, 160, 248, 381, 515, 643
CviKI_1 RGCY 9 cut(s) 29, 47, 67, 150, 160, 248, 381, 515, 643
CviQI GTAC 2 cut(s) 412, 554
DdeI CTNAG 3 cut(s) 174, 273, 537
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 537
EcoRII CCWGG 2 cut(s) 475, 631
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaiI YATR 2 cut(s) 254, 601
FauI CCCGC 1 cut(s) 567
FblI GTMKAC 2 cut(s) 96, 465
Fnu4HI GCNGC 3 cut(s) 74, 77, 207
FokI GGATG 3 cut(s) 239, 311, 649
Fsp4HI GCNGC 3 cut(s) 74, 77, 207
FspBI CTAG 1 cut(s) 249
GlaI GCGC 1 cut(s) 401
GluI GCNGC 3 cut(s) 74, 77, 207
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 1 cut(s) 381
HhaI GCGC 1 cut(s) 402
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 637
Hpy166II GTNNAC 2 cut(s) 97, 466
Hpy188I TCNGA 2 cut(s) 298, 387
Hpy188III TCNNGA 2 cut(s) 375, 627
Hpy8I GTNNAC 2 cut(s) 97, 466
HpyAV CCTTC 2 cut(s) 353, 562
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 2 cut(s) 284, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 170, 539, 596
HpyF3I CTNAG 3 cut(s) 174, 273, 537
HpySE526I ACGT 1 cut(s) 481
HspAI GCGC 1 cut(s) 400
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 6 cut(s) 367, 397, 520, 538, 571, 648
LpnPI CCDG 9 cut(s) 93, 302, 350, 462, 489, 589, 618, 645, 666
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 160, 550
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 2 cut(s) 56, 655
MalI GATC 1 cut(s) 84
MbiI CCGCTC 1 cut(s) 574
MboI GATC 1 cut(s) 82
MboII GAAGA 9 cut(s) 193, 196, 199, 254, 269, 316, 325, 467, 499
MluCI AATT 1 cut(s) 15
MnlI CCTC 7 cut(s) 118, 137, 229, 371, 496, 528, 589
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 297
MspR9I CCNGG 2 cut(s) 477, 633
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 2 cut(s) 477, 633
MwoI GCNNNNNNNGC 4 cut(s) 73, 170, 539, 596
NdeII GATC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 655
NspV TTCGAA 1 cut(s) 566
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 1 cut(s) 637
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 3 cut(s) 75, 78, 208
Psp6I CCWGG 2 cut(s) 475, 631
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 2 cut(s) 475, 631
RsaI GTAC 2 cut(s) 413, 555
RsaNI GTAC 2 cut(s) 412, 554
RseI CAYNNNNRTG 1 cut(s) 297
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 3 cut(s) 74, 77, 207
Sau3AI GATC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 477, 633
SetI ASST 9 cut(s) 10, 162, 240, 250, 345, 484, 507, 517, 645
SfaNI GCATC 2 cut(s) 160, 550
SfcI CTRYAG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 90, 625
SmoI CTYRAG 2 cut(s) 90, 625
Sse9I AATT 1 cut(s) 15
SsiI CCGC 7 cut(s) 54, 71, 74, 77, 118, 325, 574
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 475, 631
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 484
TaqI TCGA 3 cut(s) 96, 346, 566
TasI AATT 1 cut(s) 15
TatI WGTACW 2 cut(s) 411, 553
TauI GCSGC 2 cut(s) 76, 79
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 655
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 655
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 369
XmiI GTMKAC 2 cut(s) 96, 465
XspI CTAG 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.