Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008531

Physical Location & Seq

Genomic Coordinates Reverse (-)

19136566 .. 19138762

Gene Structure 2197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAGACATGTGTACGTTGGGAATTTCGACTATGATACTCGCCATTCGGATCTTGAAAGATTGTTCAGCAAGTTCGGGAGAGTGAAGCGAGTTGATATGAAGTCTGGTTATGCTTTTGTGTATTTTGAGGATGAGCGCGATGCTGAAGATGCAATCCGTAGGACTGACAATACCACTTTTGGATATGGGCGACGCAAGTTATCAGTTGAATGGGCCAAGGACTTTCAGGGTGAACGTGGGAAGCCTCGTGATGGAAAGGCAGTCTCGAATCAGAGGCCTACAAAGACACTCTTTGTCATCAACTTTGACCCTATTCGCACAAGAGAGCGTGATATGGAGAGACACTTTGAGCCATATGGTAAAGTTCTCAATGTTCGCATGAGGCGCAATTTTGCTTTTGTTCAATTCGCAACCCAGGAAGATGCAACCAAGGCTCTTGATTCTACACACAACAGCAAATTACTGGATAAGGTTGTTTCTGTTGAGTATGCCTTGAGGGAGGCTGGTGAAAGAGAAGATAGATATGCTGGCAGTCGAAGAAGGAGATCTCCTAGCCCAGTGTATCGGAGGCGTCCTAGTCCTGATTATACCCGTCGTCGCAGTCCTGAATATGACAGGTACAAGGGTCCTGCTCCTTATGAAAGACGTAAGAGTCCAGATTATGGGCGTCGCAGTTCAGACTATGGTAGAGCAAGAGCTAGGAGTCCGGGCTATGACAGAAGCCGGTCCCCGATTCAAAGAGCAAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

250

Amino Acids

29.68

Weight (kDa)

10.31

Isoelectric Point (pI)

67.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	3e-17	RNA recognition motif
RRM_1	PF00076	97 - 159	1.1e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46610 AT2G46610 AT2G46610 AT2G46610 AT3G61860
fragaria_vesca	FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090
malus_domestica	MD07G1154500.v1.1
prunus_persica	Prupe.2G193200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360501
rosa_laevigata	RLG00000027802
rosa_multiflora	Rmu_ssc0000337.1_g000009
rosa_roxburghii	Rroxscaffold_4G00296040
rosa_rugosa	Rorug01G0278800 Rorug01G0278900
rosa_samantha	Rh1AG291500 Rh1BG256500 Rh1CG274100 Rh1DG286300
rosa_wichuraiana	Rw1G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	651
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccII	CGCG	1 cut(s)	138
AclWI	GGATC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	2 cut(s)	571, 667
AfaI	GTAC	2 cut(s)	14, 620
AfiI	CCNNNNNNNGG	2 cut(s)	251, 662
AflIII	ACRYGT	1 cut(s)	7
AgsI	TTSAA	4 cut(s)	56, 209, 404, 737
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	1 cut(s)	698
AluI	AGCT	1 cut(s)	698
Alw26I	GTCTC	2 cut(s)	268, 334
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	2 cut(s)	213, 275
ApoI	RAATTY	1 cut(s)	22
AspLEI	GCGC	2 cut(s)	138, 387
AspS9I	GGNCC	3 cut(s)	213, 626, 726
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	2 cut(s)	242, 518
AvaII	GGWCC	2 cut(s)	626, 726
BaeI	ACNNNNGTAYC	2 cut(s)	610, 643
BauI	CACGAG	1 cut(s)	246
BccI	CCATC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	2 cut(s)	268, 334
BfaI	CTAG	3 cut(s)	552, 576, 699
BglII	AGATCT	1 cut(s)	545
Bme1390I	CCNGG	2 cut(s)	416, 708
Bme18I	GGWCC	2 cut(s)	626, 726
BmgT120I	GGNCC	3 cut(s)	213, 626, 726
BmiI	GGNNCC	2 cut(s)	627, 728
BmrFI	CCNGG	2 cut(s)	416, 708
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	3 cut(s)	130, 139, 412
BmuI	ACTGGG	1 cut(s)	551
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	708
BsaHI	GRCGYC	2 cut(s)	571, 667
BsaJI	CCNNGG	3 cut(s)	216, 414, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 662
Bse118I	RCCGGY	1 cut(s)	723
Bse1I	ACTGG	2 cut(s)	468, 557
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	3 cut(s)	216, 414, 429
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	251, 662
BseNI	ACTGG	2 cut(s)	468, 557
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	215, 277
BsiSI	CCGG	2 cut(s)	707, 724
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	2 cut(s)	251, 662
BsmAI	GTCTC	2 cut(s)	268, 334
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	215, 277
Bsp143I	GATC	2 cut(s)	49, 545
BspANI	GGCC	2 cut(s)	215, 277
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	627, 728
BspPI	GGATC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	468, 557
BssAI	RCCGGY	1 cut(s)	723
BssECI	CCNNGG	3 cut(s)	216, 414, 429
BssMI	GATC	2 cut(s)	49, 545
BssNI	GRCGYC	2 cut(s)	571, 667
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	216, 429
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	416
BstACI	GRCGYC	2 cut(s)	571, 667
BstC8I	GCNNGC	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	138, 387
BstKTI	GATC	2 cut(s)	52, 548
BstMAI	GTCTC	2 cut(s)	268, 334
BstMBI	GATC	2 cut(s)	49, 545
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 384, 431
BstNI	CCWGG	1 cut(s)	416
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	414, 706
BstUI	CGCG	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	49, 545
BstYI	RGATCY	2 cut(s)	49, 545
BsuRI	GGCC	2 cut(s)	215, 277
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	529
CfoI	GCGC	2 cut(s)	138, 387
Cfr10I	RCCGGY	1 cut(s)	723
Cfr13I	GGNCC	3 cut(s)	213, 626, 726
CseI	GACGC	3 cut(s)	201, 560, 656
Csp6I	GTAC	2 cut(s)	13, 619
CviAII	CATG	2 cut(s)	8, 379
CviQI	GTAC	2 cut(s)	13, 619
DpnI	GATC	2 cut(s)	51, 547
DpnII	GATC	2 cut(s)	49, 545
DrdI	GACNNNNNNGTC	1 cut(s)	651
DseDI	GACNNNNNNGTC	1 cut(s)	651
Eco130I	CCWWGG	2 cut(s)	216, 429
Eco147I	AGGCCT	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	626, 726
Eco57I	CTGAAG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	216, 429
ErhI	CCWWGG	2 cut(s)	216, 429
FaeI	CATG	2 cut(s)	11, 382
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	2 cut(s)	7, 378
FauNDI	CATATG	1 cut(s)	355
FokI	GGATG	1 cut(s)	143
FspBI	CTAG	3 cut(s)	552, 576, 699
GlaI	GCGC	2 cut(s)	137, 386
HaeIII	GGCC	2 cut(s)	215, 277
HapII	CCGG	2 cut(s)	707, 724
HgaI	GACGC	3 cut(s)	201, 560, 656
HhaI	GCGC	2 cut(s)	138, 387
Hin1I	GRCGYC	2 cut(s)	571, 667
Hin1II	CATG	2 cut(s)	11, 382
Hin6I	GCGC	2 cut(s)	136, 385
HinP1I	GCGC	2 cut(s)	136, 385
HinfI	GANTC	5 cut(s)	268, 440, 652, 703, 733
HpaII	CCGG	2 cut(s)	707, 724
HphI	GGTGA	2 cut(s)	242, 518
Hpy166II	GTNNAC	2 cut(s)	13, 233
Hpy188I	TCNGA	4 cut(s)	49, 273, 567, 679
Hpy188III	TCNNGA	8 cut(s)	53, 76, 248, 265, 437, 581, 605, 656
Hpy8I	GTNNAC	2 cut(s)	13, 233
Hpy99I	CGWCG	4 cut(s)	195, 597, 600, 672
HpyAV	CCTTC	1 cut(s)	534
HpyCH4IV	ACGT	3 cut(s)	15, 235, 646
HpyCH4V	TGCA	2 cut(s)	152, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 384, 431
HpySE526I	ACGT	3 cut(s)	15, 235, 646
Hsp92I	GRCGYC	2 cut(s)	571, 667
Hsp92II	CATG	2 cut(s)	11, 382
HspAI	GCGC	2 cut(s)	136, 385
Kzo9I	GATC	2 cut(s)	49, 545
LmnI	GCTCC	1 cut(s)	637
LweI	GCATC	3 cut(s)	130, 139, 412
MaeI	CTAG	3 cut(s)	552, 576, 699
MaeII	ACGT	3 cut(s)	15, 235, 646
MalI	GATC	2 cut(s)	51, 547
MboI	GATC	2 cut(s)	49, 545
MboII	GAAGA	4 cut(s)	158, 431, 527, 549
MflI	RGATCY	2 cut(s)	49, 545
MluCI	AATT	4 cut(s)	22, 388, 404, 458
MlyI	GAGTC	2 cut(s)	661, 712
MnlI	CCTC	8 cut(s)	121, 255, 267, 375, 489, 493, 561, 740
MspI	CCGG	2 cut(s)	707, 724
MspR9I	CCNGG	2 cut(s)	416, 708
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	3 cut(s)	149, 384, 431
NciI	CCSGG	1 cut(s)	708
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	2 cut(s)	49, 545
NlaIII	CATG	2 cut(s)	11, 382
NlaIV	GGNNCC	2 cut(s)	627, 728
NspI	RCATGY	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	277
PciI	ACATGT	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	268, 440, 733
PflMI	CCANNNNNTGG	1 cut(s)	662
PleI	GAGTC	2 cut(s)	660, 711
PpsI	GAGTC	2 cut(s)	660, 711
PpuMI	RGGWCCY	1 cut(s)	626
PscI	ACATGT	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	627, 728
PspPI	GGNCC	3 cut(s)	213, 626, 726
PspPPI	RGGWCCY	1 cut(s)	626
PsuI	RGATCY	2 cut(s)	49, 545
RsaI	GTAC	2 cut(s)	14, 620
RsaNI	GTAC	2 cut(s)	13, 619
Sau3AI	GATC	2 cut(s)	49, 545
Sau96I	GGNCC	3 cut(s)	213, 626, 726
SchI	GAGTC	2 cut(s)	661, 712
ScrFI	CCNGG	2 cut(s)	416, 708
SetI	ASST	7 cut(s)	18, 238, 474, 620, 649, 700, 751
SfaNI	GCATC	3 cut(s)	130, 139, 412
SinI	GGWCC	2 cut(s)	626, 726
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	4 cut(s)	22, 388, 404, 458
SseBI	AGGCCT	1 cut(s)	277
SspMI	CTAG	3 cut(s)	552, 576, 699
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	414, 706
StyI	CCWWGG	2 cut(s)	216, 429
TaiI	ACGT	3 cut(s)	18, 238, 649
TaqI	TCGA	3 cut(s)	27, 266, 535
TasI	AATT	4 cut(s)	22, 388, 404, 458
TfiI	GAWTC	3 cut(s)	268, 440, 733
TscAI	CASTG	1 cut(s)	564
TspDTI	ATGAA	2 cut(s)	113, 654
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	564
Van91I	CCANNNNNTGG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	626, 726
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	3 cut(s)	552, 576, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.