Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008531

Physical Location & Seq

Genomic Coordinates Reverse (-)

23179980 .. 23183022

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGGCCGGTTTTCGTCGGAAACTTCGAGTACGAAACTCGGCAATCGGAGCTGGAACGCTTGTTCTCCAAACACGGGAGGGTCGATCGTGTGGACATGAAGTCTGGTTTTGCCTTTGTCTATTTTGAGGATGAGCGGGATGCTGAAGATGCTATCCAGAACCTCGACAATAAGCCATTTGGTTATGACAGGCGCAGGCTATCTGTGGAGTGGGCTAAGGGTGAGCGTGGTCGCCATCATGATGGTTCTAAATCAGTGGCAAACCAGAGGCCAACTAAAACTTTGTTTGTCATTAACTTTGATCCCCTCCGAACCAAGGTTCGTGATATCGAAAGACACTTTGAACCTTATGGGAAGGTGCTTCATGTCAGAATTCGTCGGAACTTTGCATTTGTGCAATTTGACACACAGGAAGAAGCTACCAAAGCTCTTGAGGCTACTCACGCAAGCAAGATACTGGACAGGGTTGTGTCTGTTGAGTATGCTTTGAGGGATGACGGTGAGAGAGGTGATCGATATCATGATAGTCCCAAAAGAGGCAGTTATGGTAGGCGTGGAGATAGTCCTTATGGGAGGTCACTAAGTCCTGTGTATCGCAGGCGTCCAAGTCCTGATTATGGTCGGCCCCGTAGTCCGGCATATGACAGGTACAACGGTCCAATGTATGACAGGCACAGGAGTCCTGATTACGGAAGGAATGAGAGTCCTGAATATGGCAGATACCGCAGTCGCTCGCCTGTTCGAAGATCAAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

253

Amino Acids

29.81

Weight (kDa)

9.88

Isoelectric Point (pI)

65.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46610 AT2G46610 AT2G46610 AT2G46610 AT3G61860
fragaria_vesca	FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090
malus_domestica	MD07G1154500.v1.1
prunus_persica	Prupe.2G193200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360501
rosa_laevigata	RLG00000027802
rosa_multiflora	Rmu_ssc0000337.1_g000009
rosa_roxburghii	Rroxscaffold_4G00296040
rosa_rugosa	Rorug01G0278800 Rorug01G0278900
rosa_samantha	Rh1AG291500 Rh1BG256500 Rh1CG274100 Rh1DG286300
rosa_wichuraiana	Rw1G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	136
AciI	CCGC	2 cut(s)	136, 724
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	601
AfaI	GTAC	2 cut(s)	32, 650
AfiI	CCNNNNNNNGG	7 cut(s)	75, 316, 536, 617, 634, 689, 713
AgsI	TTSAA	1 cut(s)	344
AhdI	GACNNNNNGTC	1 cut(s)	100
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	52, 419, 428
AluI	AGCT	3 cut(s)	52, 419, 428
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	3 cut(s)	5, 269, 623
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	624, 656
AsuHPI	GGTGA	3 cut(s)	233, 512, 521
AsuII	TTCGAA	1 cut(s)	742
AvaII	GGWCC	1 cut(s)	656
BaeI	ACNNNNGTAYC	4 cut(s)	640, 673, 712, 745
BccI	CCATC	2 cut(s)	236, 243
Bme18I	GGWCC	1 cut(s)	656
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	624, 656
BmiI	GGNNCC	1 cut(s)	626
BmsI	GCATC	2 cut(s)	130, 139
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	742
BpuEI	CTTGAG	1 cut(s)	452
Bsa29I	ATCGAT	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	1 cut(s)	601
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	7 cut(s)	75, 316, 536, 617, 634, 689, 713
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	516
BseCI	ATCGAT	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	3 cut(s)	136, 145, 499
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	7 cut(s)	75, 316, 536, 617, 634, 689, 713
BseNI	ACTGG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	7, 271, 625
BshVI	ATCGAT	1 cut(s)	514
BsiEI	CGRYCG	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	8, 635
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	7 cut(s)	75, 316, 536, 617, 634, 689, 713
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	7, 271, 625
Bsp119I	TTCGAA	1 cut(s)	742
Bsp143I	GATC	4 cut(s)	85, 301, 511, 746
BspACI	CCGC	2 cut(s)	136, 724
BspANI	GGCC	3 cut(s)	7, 271, 625
BspDI	ATCGAT	1 cut(s)	514
BspHI	TCATGA	2 cut(s)	238, 520
BspLI	GGNNCC	1 cut(s)	626
BspPI	GGATC	1 cut(s)	296
BspT104I	TTCGAA	1 cut(s)	742
BsrBI	CCGCTC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	462
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	4 cut(s)	85, 301, 511, 746
BssNI	GRCGYC	1 cut(s)	601
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	500, 656
BstACI	GRCGYC	1 cut(s)	601
BstBI	TTCGAA	1 cut(s)	742
BstC8I	GCNNGC	4 cut(s)	197, 448, 599, 734
BstDEI	CTNAG	2 cut(s)	216, 581
BstF5I	GGATG	3 cut(s)	136, 145, 499
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	4 cut(s)	88, 304, 514, 749
BstMBI	GATC	4 cut(s)	85, 301, 511, 746
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 149, 425, 434, 443, 723
BstXI	CCANNNNNNTGG	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	514
BsuRI	GGCC	3 cut(s)	7, 271, 625
BsuTUI	ATCGAT	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	136, 145, 499
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	4 cut(s)	197, 448, 599, 734
CciI	TCATGA	2 cut(s)	238, 520
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	624, 656
ClaI	ATCGAT	1 cut(s)	514
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	31, 649
CviAII	CATG	4 cut(s)	97, 239, 365, 521
CviQI	GTAC	2 cut(s)	31, 649
DdeI	CTNAG	2 cut(s)	216, 581
DpnI	GATC	4 cut(s)	87, 303, 513, 748
DpnII	GATC	4 cut(s)	85, 301, 511, 746
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1105I	GACNNNNNGTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	315
Eco32I	GATATC	2 cut(s)	328, 518
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	372
EcoRV	GATATC	2 cut(s)	328, 518
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	4 cut(s)	100, 242, 368, 524
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	96, 238, 364, 520
FauI	CCCGC	1 cut(s)	129
FauNDI	CATATG	1 cut(s)	640
FokI	GGATG	3 cut(s)	143, 152, 506
GlaI	GCGC	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	7, 271, 625
HapII	CCGG	2 cut(s)	8, 635
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	601
Hin1II	CATG	4 cut(s)	100, 242, 368, 524
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	679, 703
HpaII	CCGG	2 cut(s)	8, 635
HphI	GGTGA	3 cut(s)	233, 512, 521
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	5 cut(s)	20, 49, 311, 371, 381
Hpy188III	TCNNGA	9 cut(s)	157, 239, 323, 431, 521, 611, 683, 707, 750
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	20, 381
HpyAV	CCTTC	2 cut(s)	349, 687
HpyCH4III	ACNGT	2 cut(s)	500, 656
HpyCH4V	TGCA	2 cut(s)	389, 397
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 149, 425, 434, 443, 723
HpyF3I	CTNAG	2 cut(s)	216, 581
Hsp92I	GRCGYC	1 cut(s)	601
Hsp92II	CATG	4 cut(s)	100, 242, 368, 524
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	85, 301, 511, 746
LmnI	GCTCC	1 cut(s)	49
LweI	GCATC	2 cut(s)	130, 139
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	4 cut(s)	87, 303, 513, 748
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	4 cut(s)	85, 301, 511, 746
MboII	GAAGA	3 cut(s)	158, 425, 756
MluCI	AATT	2 cut(s)	372, 398
MlyI	GAGTC	2 cut(s)	688, 712
MmeI	TCCRAC	1 cut(s)	359
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	2 cut(s)	8, 635
MwoI	GCNNNNNNNGC	6 cut(s)	49, 149, 425, 434, 443, 723
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	4 cut(s)	85, 301, 511, 746
NlaIII	CATG	4 cut(s)	100, 242, 368, 524
NlaIV	GGNNCC	1 cut(s)	626
NmeAIII	GCCGAG	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	576
NspV	TTCGAA	1 cut(s)	742
PagI	TCATGA	2 cut(s)	238, 520
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 81
Ple19I	CGATCG	1 cut(s)	88
PleI	GAGTC	2 cut(s)	687, 711
PpsI	GAGTC	2 cut(s)	687, 711
PspN4I	GGNNCC	1 cut(s)	626
PspPI	GGNCC	2 cut(s)	624, 656
PvuI	CGATCG	1 cut(s)	88
RsaI	GTAC	2 cut(s)	32, 650
RsaNI	GTAC	2 cut(s)	31, 649
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	4 cut(s)	85, 301, 511, 746
Sau96I	GGNCC	2 cut(s)	624, 656
SchI	GAGTC	2 cut(s)	688, 712
SfaNI	GCATC	2 cut(s)	130, 139
SfuI	TTCGAA	1 cut(s)	742
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	372, 398
SsiI	CCGC	2 cut(s)	136, 724
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	500, 656
TaqI	TCGA	6 cut(s)	27, 84, 165, 330, 514, 742
TasI	AATT	2 cut(s)	372, 398
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	2 cut(s)	113, 353
TspGWI	ACGGA	1 cut(s)	705
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.