Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008531

Physical Location & Seq

Genomic Coordinates Reverse (-)

52138078 .. 52141202

Gene Structure 3125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG291500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGGGCCATTTTCGTCGGCAACTTTGAGAACGATACTCGGCAATCGGATTTGGAGCGGCTGTTCTCCAAGTTCGGGAAGGTTGATCGAGTGGACATGAAAACTGGTTTTGCTTTTGTGTATCTTGATAATGATCGGGATGCTGAAGATGCTATCCATCACCTTGATGACAGGCCATTTGGTTATGACAGGCGCAGATTATCTGTGGAATGGGCTAGGGGTGAACGCGGTCGTGAACGTGGTCATCATCTTGATGGGTCTAAATCTGTGGCAAACCAGAGGCCCACAAAAACCTTGTTTGTCATCAACTTTGATCCCCTTCGCACCCGGGTTTCGGATATTGAAAGACACTTTGACCCCTATGGGAAGGTTCTTAATGTCAGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGACACTCAGGAAGAAGCTACCAAAGCCCTTGCGGCTACGCACTTGAGCAAGATACTAGACCGAGTGGTTTCTGTTGAGTATGCTCTGAGAGATGATGATGAGAGAGGTGAGCGACGTTATGATAGTCCTAGAAGAGGTGGTTATGGAAGGCATGTGGATAGTCCTTATAGGAGGTCACCAAGTCCTGTGTATCGCAGGCGTCCAAGTCCTGATTATGGTCGTGCCCGCAGCCCAGCTTATGGTAGGTACAATGGTCCAGTGTATGACAAGCGCAGGAGTCCTGATTATGGAAGAAATGCGAGTCCGGAATATGGCAGATACCGCAGTCGCTCCCCTATTCGAAGATCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

256

Amino Acids

30.13

Weight (kDa)

10.17

Isoelectric Point (pI)

65.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 60	2.1e-13	RNA recognition motif
RRM_1	PF00076	99 - 161	2.2e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46610 AT2G46610 AT2G46610 AT2G46610 AT3G61860
fragaria_vesca	FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090
malus_domestica	MD07G1154500.v1.1
prunus_persica	Prupe.2G193200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360501
rosa_laevigata	RLG00000027802
rosa_multiflora	Rmu_ssc0000337.1_g000009
rosa_roxburghii	Rroxscaffold_4G00296040
rosa_rugosa	Rorug01G0278800 Rorug01G0278900
rosa_samantha	Rh1AG291500 Rh1BG256500 Rh1CG274100 Rh1DG286300
rosa_wichuraiana	Rw1G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	718
AciI	CCGC	6 cut(s)	58, 228, 391, 446, 640, 736
AclWI	GGATC	1 cut(s)	308
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	613
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	7 cut(s)	75, 334, 548, 629, 653, 701, 725
AgsI	TTSAA	1 cut(s)	344
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	2 cut(s)	431, 650
AluI	AGCT	2 cut(s)	431, 650
AlwI	GGATC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	327
Aor13HI	TCCGGA	1 cut(s)	718
AoxI	GGCC	3 cut(s)	6, 173, 281
ApeKI	GCWGC	1 cut(s)	642
ApoI	RAATTY	1 cut(s)	384
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	2 cut(s)	195, 687
AspS9I	GGNCC	3 cut(s)	6, 282, 668
AsuC2I	CCSGG	2 cut(s)	328, 329
AsuHPI	GGTGA	4 cut(s)	152, 233, 533, 582
AsuII	TTCGAA	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	640
BaeI	ACNNNNGTAYC	4 cut(s)	652, 685, 724, 757
BbvI	GCAGC	1 cut(s)	654
BccI	CCATC	2 cut(s)	165, 248
BcnI	CCSGG	2 cut(s)	328, 329
BfaI	CTAG	3 cut(s)	216, 470, 543
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	3 cut(s)	59, 447, 643
BlsI	GCNGC	3 cut(s)	60, 448, 644
Bme1390I	CCNGG	2 cut(s)	328, 329
Bme18I	GGWCC	1 cut(s)	668
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	3 cut(s)	6, 282, 668
BmrFI	CCNGG	2 cut(s)	328, 329
BmsI	GCATC	2 cut(s)	130, 139
Bpu14I	TTCGAA	1 cut(s)	754
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	2 cut(s)	328, 329
BsaBI	GATNNNNATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	718
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	7 cut(s)	75, 334, 548, 629, 653, 701, 725
Bse1I	ACTGG	2 cut(s)	109, 671
Bse8I	GATNNNNATC	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	718
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	145
BseJI	GATNNNNATC	1 cut(s)	132
BseLI	CCNNNNNNNGG	7 cut(s)	75, 334, 548, 629, 653, 701, 725
BseMII	CTCAG	2 cut(s)	434, 491
BseNI	ACTGG	2 cut(s)	109, 671
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	1 cut(s)	654
BseYI	CCCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	8, 175, 283
BsiEI	CGRYCG	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	328, 719
BslI	CCNNNNNNNGG	7 cut(s)	75, 334, 548, 629, 653, 701, 725
BsnI	GGCC	3 cut(s)	8, 175, 283
BsoBI	CYCGRG	1 cut(s)	327
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp13I	TCCGGA	1 cut(s)	718
Bsp143I	GATC	4 cut(s)	85, 133, 313, 758
BspACI	CCGC	6 cut(s)	58, 228, 391, 446, 640, 736
BspANI	GGCC	3 cut(s)	8, 175, 283
BspCNI	CTCAG	2 cut(s)	433, 492
BspEI	TCCGGA	1 cut(s)	718
BspFNI	CGCG	1 cut(s)	228
BspPI	GGATC	1 cut(s)	308
BspT104I	TTCGAA	1 cut(s)	754
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	109, 671
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	4 cut(s)	85, 133, 313, 758
BssNI	GRCGYC	1 cut(s)	613
Bst6I	CTCTTC	1 cut(s)	541
BstACI	GRCGYC	1 cut(s)	613
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	2 cut(s)	611, 640
BstDEI	CTNAG	2 cut(s)	420, 500
BstEII	GGTNACC	1 cut(s)	588
BstENI	CCTNNNNNAGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	195, 687
BstKTI	GATC	4 cut(s)	88, 136, 316, 761
BstMBI	GATC	4 cut(s)	85, 133, 313, 758
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 437, 446, 735
BstNSI	RCATGY	1 cut(s)	569
BstPI	GGTNACC	1 cut(s)	588
BstSCI	CCNGG	2 cut(s)	326, 327
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	654
BsuRI	GGCC	3 cut(s)	8, 175, 283
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	2 cut(s)	611, 640
CfoI	GCGC	2 cut(s)	195, 687
Cfr13I	GGNCC	3 cut(s)	6, 282, 668
Cfr9I	CCCGGG	1 cut(s)	327
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	3 cut(s)	97, 566, 768
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	2 cut(s)	420, 500
DpnI	GATC	4 cut(s)	87, 135, 315, 760
DpnII	GATC	4 cut(s)	85, 133, 313, 758
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
EciI	GGCGGA	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	668
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	327
Eco91I	GGTNACC	1 cut(s)	588
EcoNI	CCTNNNNNAGG	1 cut(s)	546
EcoO65I	GGTNACC	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	384
FaeI	CATG	3 cut(s)	100, 569, 771
FatI	CATG	3 cut(s)	96, 565, 767
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	3 cut(s)	59, 447, 643
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	3 cut(s)	59, 447, 643
FspBI	CTAG	3 cut(s)	216, 470, 543
GlaI	GCGC	2 cut(s)	194, 686
GluI	GCNGC	3 cut(s)	59, 447, 643
GsaI	CCCAGC	1 cut(s)	650
HaeIII	GGCC	3 cut(s)	8, 175, 283
HapII	CCGG	2 cut(s)	328, 719
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	2 cut(s)	195, 687
Hin1I	GRCGYC	1 cut(s)	613
Hin1II	CATG	3 cut(s)	100, 569, 771
Hin6I	GCGC	2 cut(s)	193, 685
HinP1I	GCGC	2 cut(s)	193, 685
HinfI	GANTC	2 cut(s)	691, 715
HpaII	CCGG	2 cut(s)	328, 719
HphI	GGTGA	4 cut(s)	152, 233, 533, 582
Hpy166II	GTNNAC	3 cut(s)	94, 224, 236
Hpy188I	TCNGA	4 cut(s)	49, 337, 383, 501
Hpy8I	GTNNAC	3 cut(s)	94, 224, 236
Hpy99I	CGWCG	2 cut(s)	20, 531
HpyAV	CCTTC	4 cut(s)	73, 329, 361, 555
HpyCH4IV	ACGT	2 cut(s)	238, 529
HpyCH4V	TGCA	2 cut(s)	401, 409
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 437, 446, 735
HpyF3I	CTNAG	2 cut(s)	420, 500
HpySE526I	ACGT	2 cut(s)	238, 529
Hsp92I	GRCGYC	1 cut(s)	613
Hsp92II	CATG	3 cut(s)	100, 569, 771
HspAI	GCGC	2 cut(s)	193, 685
Kpn2I	TCCGGA	1 cut(s)	718
Kzo9I	GATC	4 cut(s)	85, 133, 313, 758
LmnI	GCTCC	2 cut(s)	55, 749
Lsp1109I	GCAGC	1 cut(s)	654
LweI	GCATC	2 cut(s)	130, 139
MaeI	CTAG	3 cut(s)	216, 470, 543
MaeII	ACGT	2 cut(s)	238, 529
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	4 cut(s)	87, 135, 315, 760
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	4 cut(s)	85, 133, 313, 758
MboII	GAAGA	5 cut(s)	158, 437, 558, 717, 768
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	700, 724
MnlI	CCTC	4 cut(s)	273, 512, 542, 579
MroI	TCCGGA	1 cut(s)	718
MseI	TTAA	1 cut(s)	375
MslI	CAYNNNNRTG	2 cut(s)	165, 252
MspI	CCGG	2 cut(s)	328, 719
MspR9I	CCNGG	2 cut(s)	328, 329
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	4 cut(s)	149, 437, 446, 735
NciI	CCSGG	2 cut(s)	328, 329
NdeII	GATC	4 cut(s)	85, 133, 313, 758
NlaIII	CATG	3 cut(s)	100, 569, 771
NmeAIII	GCCGAG	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	588
NspI	RCATGY	1 cut(s)	569
NspV	TTCGAA	1 cut(s)	754
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	60, 448, 644
PleI	GAGTC	2 cut(s)	699, 723
PpsI	GAGTC	2 cut(s)	699, 723
PspEI	GGTNACC	1 cut(s)	588
PspFI	CCCAGC	1 cut(s)	646
PspPI	GGNCC	3 cut(s)	6, 282, 668
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	2 cut(s)	165, 252
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	3 cut(s)	59, 447, 643
Sau3AI	GATC	4 cut(s)	85, 133, 313, 758
Sau96I	GGNCC	3 cut(s)	6, 282, 668
SchI	GAGTC	2 cut(s)	700, 724
ScrFI	CCNGG	2 cut(s)	328, 329
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	2 cut(s)	130, 139
SfuI	TTCGAA	1 cut(s)	754
SinI	GGWCC	1 cut(s)	668
SmaI	CCCGGG	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	165, 252
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	6 cut(s)	58, 228, 391, 446, 640, 736
SspMI	CTAG	3 cut(s)	216, 470, 543
StyD4I	CCNGG	2 cut(s)	326, 327
TaiI	ACGT	2 cut(s)	241, 532
TaqI	TCGA	2 cut(s)	88, 754
TaqII	GACCGA	1 cut(s)	489
TasI	AATT	1 cut(s)	384
TauI	GCSGC	2 cut(s)	61, 449
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	588
TseI	GCWGC	1 cut(s)	642
Tsp45I	GTSAC	1 cut(s)	588
TspDTI	ATGAA	1 cut(s)	113
TspMI	CCCGGG	1 cut(s)	327
TspRI	CASTG	1 cut(s)	678
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	546
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	1 cut(s)	569
XmaI	CCCGGG	1 cut(s)	327
XspI	CTAG	3 cut(s)	216, 470, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.