Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008531

Physical Location & Seq

Genomic Coordinates Reverse (-)

22900050 .. 22902395

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGGCCAGTGTTCGTCGGCAATTTCGAGTATGAAACTCGCCAGTCGGATCTGGAACGGTTGTTCGACAAGTATGGGAGAGTCGACCGAGTGGACATGAAATCTGGATATGCTTTTGTGTACTTTGAGGATGAACGTGATGCTGAAGACGCTATTCGCAAACTCGACAATTTTCCTTTTGGATATGAGAAACGCAGGTTATCAGTTGAATGGGCAAAGGGTGAACGTGGCAGGCCTCGTGGTGACGCGAAAGCCCCTTCAAATCTGAAGCCTACAAAGACACTGTTTGTCATTAACTTTGACCCCATTAGAACAAAAGAGCACGACATTGAAAAACACTTTGAGCCCTATGGTAAGGTCACCAACGTGCGTATCAGACGCAACTTCTCATTTGTTCAGTTTGAAACACAAGAGGATGCTACAAAAGCCCTTGAAGCTACTCAAAGAAGCAAAATATTGGATAGGGTTGTTTCCGTGGAGTATGCGTTGAAAGATGACGATGAAAGAGATGATCGAAATGGTGGTCGTAGCCCGAGAAGGTCTCTTAGTCCTGTGTATCGTAGGCGTCCAAGTCCAGATTATGGCAGGCGTCCAAGCCCTGGTCAGGGTAGGCGTCCAAGTCCAGATTATGGTCGTGCTCGAAGCCCAGAATACGACAGATACAAAGGTCCAGCAGCTTATGAAAGACGGAGGAGTCCAGATTATGGACGAAGGAGTTCTGATTATGGTAGACAAAGGAGCCCTGGTTATGACCGATACAGAAGTCGTTCTCCAGTCCCAAGAGGAAGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

264

Amino Acids

31.15

Weight (kDa)

9.98

Isoelectric Point (pI)

70.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 60	1.4e-15	RNA recognition motif
RRM_1	PF00076	95 - 157	5.1e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46610 AT2G46610 AT2G46610 AT2G46610 AT3G61860
fragaria_vesca	FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090
malus_domestica	MD07G1154500.v1.1
prunus_persica	Prupe.2G193200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360501
rosa_laevigata	RLG00000027802
rosa_multiflora	Rmu_ssc0000337.1_g000009
rosa_roxburghii	Rroxscaffold_4G00296040
rosa_rugosa	Rorug01G0278800 Rorug01G0278900
rosa_samantha	Rh1AG291500 Rh1BG256500 Rh1CG274100 Rh1DG286300
rosa_wichuraiana	Rw1G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	186
AccB7I	CCANNNNNTGG	4 cut(s)	581, 599, 629, 704
AccI	GTMKAC	2 cut(s)	84, 730
AccII	CGCG	1 cut(s)	248
AclWI	GGATC	1 cut(s)	57
AcuI	CTGAAG	2 cut(s)	165, 287
AcyI	GRCGYC	3 cut(s)	565, 589, 613
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	6 cut(s)	581, 599, 604, 605, 629, 704
AgsI	TTSAA	6 cut(s)	209, 261, 332, 404, 434, 490
AjnI	CCWGG	2 cut(s)	598, 742
AleI	CACNNNNGTG	1 cut(s)	365
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	2 cut(s)	437, 677
AluI	AGCT	2 cut(s)	437, 677
Alw21I	GWGCWC	2 cut(s)	324, 640
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	57
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	2 cut(s)	5, 233
ApeKI	GCWGC	1 cut(s)	674
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
Asp700I	GAANNNNTTC	2 cut(s)	715, 766
AspS9I	GGNCC	1 cut(s)	668
AsuHPI	GGTGA	3 cut(s)	233, 254, 352
AvaI	CYCGRG	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	668
BaeI	ACNNNNGTAYC	6 cut(s)	355, 388, 652, 685, 748, 781
BanII	GRGCYC	2 cut(s)	348, 743
BauI	CACGAG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	2 cut(s)	324, 640
BbvI	GCAGC	1 cut(s)	686
BciT130I	CCWGG	2 cut(s)	600, 744
BcoDI	GTCTC	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	186
BisI	GCNGC	1 cut(s)	675
BlsI	GCNGC	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	600, 744
Bme18I	GGWCC	1 cut(s)	668
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	1 cut(s)	740
BmrFI	CCNGG	2 cut(s)	600, 744
BmsI	GCATC	2 cut(s)	130, 406
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpmI	CTGGAG	1 cut(s)	756
BsaHI	GRCGYC	3 cut(s)	565, 589, 613
BsaI	GGTCTC	1 cut(s)	546
BsaJI	CCNNGG	3 cut(s)	474, 598, 742
BsaXI	ACNNNNNCTCC	4 cut(s)	470, 500, 730, 760
Bsc4I	CCNNNNNNNGG	6 cut(s)	581, 599, 604, 605, 629, 704
Bse1I	ACTGG	3 cut(s)	8, 43, 773
BseBI	CCWGG	2 cut(s)	600, 744
BseDI	CCNNGG	3 cut(s)	474, 598, 742
BseGI	GGATG	2 cut(s)	136, 421
BseLI	CCNNNNNNNGG	6 cut(s)	581, 599, 604, 605, 629, 704
BseNI	ACTGG	3 cut(s)	8, 43, 773
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	2 cut(s)	7, 235
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	324, 640
BsiHKCI	CYCGRG	1 cut(s)	532
BslFI	GGGAC	1 cut(s)	761
BslI	CCNNNNNNNGG	6 cut(s)	581, 599, 604, 605, 629, 704
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	761
BsnI	GGCC	2 cut(s)	7, 235
Bso31I	GGTCTC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	4 cut(s)	324, 348, 640, 743
Bsp143I	GATC	2 cut(s)	49, 511
BspANI	GGCC	2 cut(s)	7, 235
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	740
BspMI	ACCTGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	8, 43, 773
BssECI	CCNNGG	3 cut(s)	474, 598, 742
BssMI	GATC	2 cut(s)	49, 511
BssNI	GRCGYC	3 cut(s)	565, 589, 613
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	600, 744
Bst4CI	ACNGT	2 cut(s)	60, 285
BstACI	GRCGYC	3 cut(s)	565, 589, 613
BstC8I	GCNNGC	2 cut(s)	233, 587
BstDEI	CTNAG	1 cut(s)	545
BstDSI	CCRYGG	1 cut(s)	474
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	136, 421
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	2 cut(s)	52, 514
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	2 cut(s)	49, 511
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 425, 434
BstNI	CCWGG	2 cut(s)	600, 744
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	598, 742
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	686
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	7, 235
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	136, 421
BtsIMutI	CAGTG	2 cut(s)	15, 281
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	233, 587
Cfr13I	GGNCC	1 cut(s)	668
CseI	GACGC	6 cut(s)	158, 254, 387, 554, 578, 602
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	97
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	545
DpnI	GATC	2 cut(s)	51, 513
DpnII	GATC	2 cut(s)	49, 511
DrdI	GACNNNNNNGTC	1 cut(s)	693
DseDI	GACNNNNNNGTC	1 cut(s)	693
Eco147I	AGGCCT	1 cut(s)	235
Eco24I	GRGCYC	2 cut(s)	348, 743
Eco31I	GGTCTC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	165, 287
Eco88I	CYCGRG	1 cut(s)	532
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	598, 742
EcoT38I	GRGCYC	2 cut(s)	348, 743
FaeI	CATG	1 cut(s)	100
FaqI	GGGAC	1 cut(s)	761
FatI	CATG	1 cut(s)	96
FblI	GTMKAC	2 cut(s)	84, 730
Fnu4HI	GCNGC	1 cut(s)	675
FokI	GGATG	2 cut(s)	143, 428
FriOI	GRGCYC	2 cut(s)	348, 743
Fsp4HI	GCNGC	1 cut(s)	675
GluI	GCNGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	2 cut(s)	7, 235
HgaI	GACGC	6 cut(s)	158, 254, 387, 554, 578, 602
Hin1I	GRCGYC	3 cut(s)	565, 589, 613
Hin1II	CATG	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	81, 694
HphI	GGTGA	3 cut(s)	233, 254, 352
Hpy166II	GTNNAC	5 cut(s)	85, 94, 121, 224, 731
Hpy188I	TCNGA	4 cut(s)	49, 267, 377, 721
Hpy188III	TCNNGA	5 cut(s)	53, 105, 575, 623, 698
Hpy8I	GTNNAC	5 cut(s)	85, 94, 121, 224, 731
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	267, 531, 705
HpyCH4III	ACNGT	2 cut(s)	60, 285
HpyCH4IV	ACGT	3 cut(s)	136, 226, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 425, 434
HpyF3I	CTNAG	1 cut(s)	545
HpySE526I	ACGT	3 cut(s)	136, 226, 366
Hsp92I	GRCGYC	3 cut(s)	565, 589, 613
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	49, 511
LmnI	GCTCC	1 cut(s)	738
Lsp1109I	GCAGC	1 cut(s)	686
LweI	GCATC	2 cut(s)	130, 406
MaeII	ACGT	3 cut(s)	136, 226, 366
MaeIII	GTNAC	2 cut(s)	242, 358
MalI	GATC	2 cut(s)	51, 513
MboI	GATC	2 cut(s)	49, 511
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	4 cut(s)	324, 348, 640, 743
MluCI	AATT	2 cut(s)	22, 169
MlyI	GAGTC	2 cut(s)	90, 703
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	5 cut(s)	121, 246, 406, 684, 776
MroXI	GAANNNNTTC	2 cut(s)	715, 766
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	600, 744
MvaI	CCWGG	2 cut(s)	600, 744
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	149, 425, 434
NdeII	GATC	2 cut(s)	49, 511
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	740
NmuCI	GTSAC	2 cut(s)	242, 358
OliI	CACNNNNGTG	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdmI	GAANNNNTTC	2 cut(s)	715, 766
PflMI	CCANNNNNTGG	4 cut(s)	581, 599, 629, 704
PkrI	GCNGC	1 cut(s)	676
PleI	GAGTC	2 cut(s)	89, 702
PpsI	GAGTC	2 cut(s)	89, 702
Psp6I	CCWGG	2 cut(s)	598, 742
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	2 cut(s)	598, 742
PspN4I	GGNNCC	1 cut(s)	740
PspPI	GGNCC	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	365
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	1 cut(s)	675
Sau3AI	GATC	2 cut(s)	49, 511
Sau96I	GGNCC	1 cut(s)	668
SchI	GAGTC	2 cut(s)	90, 703
ScrFI	CCNGG	2 cut(s)	600, 744
SduI	GDGCHC	4 cut(s)	324, 348, 640, 743
SfaNI	GCATC	2 cut(s)	130, 406
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	2 cut(s)	22, 169
SseBI	AGGCCT	1 cut(s)	235
SspI	AATATT	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	235
StyD4I	CCNGG	2 cut(s)	598, 742
TaaI	ACNGT	2 cut(s)	60, 285
TaiI	ACGT	3 cut(s)	139, 229, 369
TaqI	TCGA	6 cut(s)	27, 66, 84, 165, 514, 640
TaqII	GACCGA	2 cut(s)	102, 768
TasI	AATT	2 cut(s)	22, 169
TatI	WGTACW	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	15, 288
TseFI	GTSAC	2 cut(s)	242, 358
TseI	GCWGC	1 cut(s)	674
Tsp45I	GTSAC	2 cut(s)	242, 358
TspDTI	ATGAA	5 cut(s)	48, 113, 147, 516, 696
TspGWI	ACGGA	2 cut(s)	463, 703
TspRI	CASTG	2 cut(s)	15, 288
Van91I	CCANNNNNTGG	4 cut(s)	581, 599, 629, 704
VpaK11BI	GGWCC	1 cut(s)	668
XmiI	GTMKAC	2 cut(s)	84, 730
XmnI	GAANNNNTTC	2 cut(s)	715, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.