Rw1G025820

Arginine serine-rich-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0008531
Physical Location & Seq
Reverse (-)
52572315 .. 52574063
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025820.1

Sequence Viewer

Length: 711 bp
ATGCAATGCCTCTACAGTCTTATGTGCATCAGCCCCTCACTAGCAGGTTTTGCTTTTGTGTATCTTGATAATGATCGGGATGCTGAAGATGCTATCCATCACCTTGATGACAGGCCATTTGGTTATGACAGGCGCAGATTATCTGTGGAATGGGCTAGGGGTGAACGCGGTCGTGAACGTGGTCATCATCTTGATGGGTCTAAATCTGTGGCAAACCAGAGGCCCACAAAAACCTTGTTTGTCATCAACTTTGATCCCCTTCGCACCCGGGTTTCGGATATTGAAAGACACTTTGACCCCTATGGGAAGGTTCTTAATGTCAGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGACACTCAGGAAGAAGCTACCAAAGCCCTTGCGGCTACGCACTTGAGCAAGATACTAGACCGAGTGGTTTCTGTTGAGTATGCTCTGAGAGATGATGATGAGAGAGGTGAGCGACGTTATGATAGTCCTAGAAGAGGTGGTTATGGAAGGCATGTGGATAGTCCATATAGGAGGTCACCAAGTCCTGTGTATCGCAGGCGTCCAAGTCCTGATTATGGTCGTGCCCGCAGCCCAGCTTATGGTAGGTACAATGGTCCGGTGTATGACAGGCGCAGGAGTCCTGATTATGGAAGAAATGCAAGTCCGGAATATGGCAGATACCGCAGTCGCTCCCCTATTCGAAGATCAAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1

Protein Analysis

236

Amino Acids

27.66

Weight (kDa)

10.09

Isoelectric Point (pI)

76.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 79 - 141 1.9e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 593
AccII CGCG 1 cut(s) 168
AccIII TCCGGA 1 cut(s) 658
AciI CCGC 5 cut(s) 168, 331, 386, 580, 676
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 553
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 6 cut(s) 274, 488, 569, 593, 641, 665
AgsI TTSAA 1 cut(s) 284
AluBI AGCT 2 cut(s) 371, 590
AluI AGCT 2 cut(s) 371, 590
AlwI GGATC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 267
Aor13HI TCCGGA 1 cut(s) 658
AoxI GGCC 2 cut(s) 113, 221
ApeKI GCWGC 1 cut(s) 582
ApoI RAATTY 1 cut(s) 324
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspLEI GCGC 2 cut(s) 135, 627
AspS9I GGNCC 2 cut(s) 222, 608
AsuC2I CCSGG 2 cut(s) 268, 269
AsuHPI GGTGA 4 cut(s) 92, 173, 473, 522
AsuII TTCGAA 1 cut(s) 694
AvaI CYCGRG 1 cut(s) 267
AvaII GGWCC 1 cut(s) 608
BaeGI GKGCMC 1 cut(s) 580
BaeI ACNNNNGTAYC 4 cut(s) 592, 625, 664, 697
BbvI GCAGC 1 cut(s) 594
BccI CCATC 2 cut(s) 105, 188
BcnI CCSGG 2 cut(s) 268, 269
BfaI CTAG 4 cut(s) 41, 156, 410, 483
BfmI CTRYAG 1 cut(s) 13
BfuAI ACCTGC 1 cut(s) 35
BglI GCCNNNNNGGC 1 cut(s) 386
BisI GCNGC 2 cut(s) 387, 583
BlsI GCNGC 2 cut(s) 388, 584
Bme1390I CCNGG 2 cut(s) 268, 269
Bme18I GGWCC 1 cut(s) 608
BmeT110I CYCGRG 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 222, 608
BmrFI CCNGG 2 cut(s) 268, 269
BmsI GCATC 3 cut(s) 36, 70, 79
Bpu14I TTCGAA 1 cut(s) 694
BpuEI CTTGAG 1 cut(s) 418
BpuMI CCSGG 2 cut(s) 268, 269
BsaBI GATNNNNATC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 553
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 610, 658
Bsc4I CCNNNNNNNGG 6 cut(s) 274, 488, 569, 593, 641, 665
Bse3DI GCAATG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 72
BseAI TCCGGA 1 cut(s) 658
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 6 cut(s) 274, 488, 569, 593, 641, 665
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 374, 431
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 1 cut(s) 594
BseYI CCCAGC 1 cut(s) 586
BsgI GTGCAG 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 115, 223
BsiEI CGRYCG 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 3 cut(s) 268, 611, 659
BslI CCNNNNNNNGG 6 cut(s) 274, 488, 569, 593, 641, 665
BsnI GGCC 2 cut(s) 115, 223
BsoBI CYCGRG 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 694
Bsp1286I GDGCHC 1 cut(s) 580
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 3 cut(s) 73, 253, 698
BspACI CCGC 5 cut(s) 168, 331, 386, 580, 676
BspANI GGCC 2 cut(s) 115, 223
BspCNI CTCAG 2 cut(s) 373, 432
BspEI TCCGGA 1 cut(s) 658
BspFNI CGCG 1 cut(s) 168
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 73, 253, 698
BssNI GRCGYC 1 cut(s) 553
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 481
BstACI GRCGYC 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 2 cut(s) 551, 580
BstDEI CTNAG 2 cut(s) 360, 440
BstEII GGTNACC 1 cut(s) 528
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 2 cut(s) 135, 627
BstKTI GATC 3 cut(s) 76, 256, 701
BstMBI GATC 3 cut(s) 73, 253, 698
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 50, 89, 377, 386, 675
BstNSI RCATGY 1 cut(s) 509
BstPI GGTNACC 1 cut(s) 528
BstSCI CCNGG 2 cut(s) 266, 267
BstSFI CTRYAG 1 cut(s) 13
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 594
BsuRI GGCC 2 cut(s) 115, 223
BtsCI GGATG 1 cut(s) 85
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 2 cut(s) 551, 580
CfoI GCGC 2 cut(s) 135, 627
Cfr13I GGNCC 2 cut(s) 222, 608
Cfr9I CCCGGG 1 cut(s) 267
CseI GACGC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 601
CviAII CATG 2 cut(s) 506, 708
CviJI RGCY 9 cut(s) 33, 115, 155, 223, 371, 380, 389, 585, 590
CviKI_1 RGCY 9 cut(s) 33, 115, 155, 223, 371, 380, 389, 585, 590
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 2 cut(s) 360, 440
DpnI GATC 3 cut(s) 75, 255, 700
DpnII GATC 3 cut(s) 73, 253, 698
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
EciI GGCGGA 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 267
Eco91I GGTNACC 1 cut(s) 528
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoO65I GGTNACC 1 cut(s) 528
EcoRI GAATTC 1 cut(s) 324
FaeI CATG 2 cut(s) 509, 711
FatI CATG 2 cut(s) 505, 707
FauI CCCGC 1 cut(s) 587
Fnu4HI GCNGC 2 cut(s) 387, 583
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 387, 583
FspBI CTAG 4 cut(s) 41, 156, 410, 483
GlaI GCGC 2 cut(s) 134, 626
GluI GCNGC 2 cut(s) 387, 583
GsaI CCCAGC 1 cut(s) 590
HaeIII GGCC 2 cut(s) 115, 223
HapII CCGG 3 cut(s) 268, 611, 659
HgaI GACGC 1 cut(s) 542
HhaI GCGC 2 cut(s) 135, 627
Hin1I GRCGYC 1 cut(s) 553
Hin1II CATG 2 cut(s) 509, 711
Hin6I GCGC 2 cut(s) 133, 625
HinP1I GCGC 2 cut(s) 133, 625
HinfI GANTC 1 cut(s) 631
HpaII CCGG 3 cut(s) 268, 611, 659
HphI GGTGA 4 cut(s) 92, 173, 473, 522
Hpy166II GTNNAC 2 cut(s) 164, 176
Hpy188I TCNGA 3 cut(s) 277, 323, 441
Hpy188III TCNNGA 9 cut(s) 65, 77, 173, 191, 362, 563, 635, 659, 702
Hpy8I GTNNAC 2 cut(s) 164, 176
Hpy99I CGWCG 1 cut(s) 471
HpyAV CCTTC 3 cut(s) 269, 301, 495
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 2 cut(s) 178, 469
HpyCH4V TGCA 5 cut(s) 4, 27, 341, 349, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 89, 377, 386, 675
HpyF3I CTNAG 2 cut(s) 360, 440
HpySE526I ACGT 2 cut(s) 178, 469
Hsp92I GRCGYC 1 cut(s) 553
Hsp92II CATG 2 cut(s) 509, 711
HspAI GCGC 2 cut(s) 133, 625
Kpn2I TCCGGA 1 cut(s) 658
Kzo9I GATC 3 cut(s) 73, 253, 698
LmnI GCTCC 1 cut(s) 689
Lsp1109I GCAGC 1 cut(s) 594
LweI GCATC 3 cut(s) 36, 70, 79
MaeI CTAG 4 cut(s) 41, 156, 410, 483
MaeII ACGT 2 cut(s) 178, 469
MaeIII GTNAC 1 cut(s) 528
MalI GATC 3 cut(s) 75, 255, 700
MboI GATC 3 cut(s) 73, 253, 698
MboII GAAGA 5 cut(s) 98, 377, 498, 657, 708
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 1 cut(s) 324
MlyI GAGTC 1 cut(s) 640
MnlI CCTC 6 cut(s) 20, 46, 213, 452, 482, 519
MroI TCCGGA 1 cut(s) 658
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 105, 192
MspI CCGG 3 cut(s) 268, 611, 659
MspR9I CCNGG 2 cut(s) 268, 269
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 5 cut(s) 50, 89, 377, 386, 675
NciI CCSGG 2 cut(s) 268, 269
NdeII GATC 3 cut(s) 73, 253, 698
NlaIII CATG 2 cut(s) 509, 711
NmuCI GTSAC 1 cut(s) 528
NspI RCATGY 1 cut(s) 509
NspV TTCGAA 1 cut(s) 694
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 2 cut(s) 388, 584
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
PspEI GGTNACC 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 586
PspPI GGNCC 2 cut(s) 222, 608
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 2 cut(s) 105, 192
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 387, 583
Sau3AI GATC 3 cut(s) 73, 253, 698
Sau96I GGNCC 2 cut(s) 222, 608
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 2 cut(s) 268, 269
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 3 cut(s) 36, 70, 79
SfcI CTRYAG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 694
SinI GGWCC 1 cut(s) 608
SmaI CCCGGG 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 105, 192
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 1 cut(s) 324
SsiI CCGC 5 cut(s) 168, 331, 386, 580, 676
SspMI CTAG 4 cut(s) 41, 156, 410, 483
StyD4I CCNGG 2 cut(s) 266, 267
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 2 cut(s) 181, 472
TaqI TCGA 1 cut(s) 694
TaqII GACCGA 1 cut(s) 429
TasI AATT 1 cut(s) 324
TauI GCSGC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 1 cut(s) 582
Tsp45I GTSAC 1 cut(s) 528
TspMI CCCGGG 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 608
XagI CCTNNNNNAGG 1 cut(s) 486
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 509
XmaI CCCGGG 1 cut(s) 267
XspI CTAG 4 cut(s) 41, 156, 410, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.