Rorug01G0278800

Arginine serine-rich-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008531
Physical Location & Seq
Forward (+)
39202903 .. 39203461
559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0278800.1

Sequence Viewer

Length: 495 bp
ATGAAGAGCTTCTTCTCAACAGGGTTTATTATAGCCATTCTTCTTTTGGCAATTTTCTTGGTTAGTGAAGCTCAGCAATGTCGCCCAAGTGGTAGAATCAGAGGAAGGAAGCCCCCTCCAGGACAATGTAACCAGGAGGATGACTCTGACTGCTGCAAAGCCGGAAAAATGTACCCAACATACACGTGCTCGCCACCTATGTCCGGCAACACCCAGGCCTACCTCACTCTTAACAGCTTTGAAGCAGGCGGTGACGGAGGAGGCCCATCTGAATGTGACGGCCAGTACCATGATGACAACACTCCAGTTGTGGCATTATCCACCGGATGGTACAATGGTGGATCAAGGTGCCTTAAGAACATCAGAATTAACGACCATGATTATCAGCCTCCTTGTCCTAACAACATTGTTGATGCTTCCAAGGCTGTATGGAAAGCCTTGGGTGTGTCTGAAGACAACTGGGGTGGCTTAGATATCACATGGTCTGACGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1

Protein Analysis

164

Amino Acids

17.73

Weight (kDa)

4.87

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 17 - 123 4.8e-40 Kiwellin-1
KWL1 PF24300 124 - 164 4.1e-10 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 327
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 471
AcvI CACGTG 1 cut(s) 186
AfaI GTAC 3 cut(s) 173, 287, 332
AfiI CCNNNNNNNGG 3 cut(s) 119, 203, 327
AflII CTTAAG 1 cut(s) 353
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 3 cut(s) 118, 132, 213
AluBI AGCT 3 cut(s) 9, 71, 237
AluI AGCT 3 cut(s) 9, 71, 237
Alw21I GWGCWC 1 cut(s) 191
AlwI GGATC 1 cut(s) 349
AoxI GGCC 3 cut(s) 216, 262, 280
ApeKI GCWGC 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
BanI GGYRCC 1 cut(s) 348
BbrPI CACGTG 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 274, 321
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 3 cut(s) 120, 134, 215
BfrI CTTAAG 1 cut(s) 353
BisI GCNGC 1 cut(s) 154
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 3 cut(s) 120, 134, 215
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 3 cut(s) 120, 134, 215
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 459
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 2 cut(s) 102, 288
Bpu1102I GCTNAGC 1 cut(s) 72
BsaAI YACGTR 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 213, 420, 438
BsaWI WCCGGW 1 cut(s) 323
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 203, 327
Bse1I ACTGG 3 cut(s) 283, 305, 464
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 3 cut(s) 120, 134, 215
BseDI CCNNGG 3 cut(s) 213, 420, 438
BseGI GGATG 2 cut(s) 145, 332
BseLI CCNNNNNNNGG 3 cut(s) 119, 203, 327
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 3 cut(s) 283, 305, 464
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 3 cut(s) 218, 264, 282
BshNI GGYRCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 3 cut(s) 162, 204, 324
BslI CCNNNNNNNGG 3 cut(s) 119, 203, 327
BsnI GGCC 3 cut(s) 218, 264, 282
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 1 cut(s) 341
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 1 cut(s) 249
BspANI GGCC 3 cut(s) 218, 264, 282
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 350
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 3 cut(s) 283, 305, 464
BssECI CCNNGG 3 cut(s) 213, 420, 438
BssMI GATC 1 cut(s) 341
BssT1I CCWWGG 2 cut(s) 420, 438
Bst2UI CCWGG 3 cut(s) 120, 134, 215
BstAFI CTTAAG 1 cut(s) 353
BstBAI YACGTR 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 191, 247
BstDEI CTNAG 3 cut(s) 72, 469, 492
BstF5I GGATG 2 cut(s) 145, 332
BstKTI GATC 1 cut(s) 344
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 3 cut(s) 120, 134, 215
BstSCI CCNGG 3 cut(s) 118, 132, 213
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 459
BsuRI GGCC 3 cut(s) 218, 264, 282
BtsCI GGATG 2 cut(s) 145, 332
Cac8I GCNNGC 2 cut(s) 191, 247
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 172, 286, 331
CspCI CAANNNNNGTGG 2 cut(s) 445, 480
CviAII CATG 3 cut(s) 290, 377, 480
CviQI GTAC 3 cut(s) 172, 286, 331
DdeI CTNAG 3 cut(s) 72, 469, 492
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 280
Eco130I CCWWGG 2 cut(s) 420, 438
Eco147I AGGCCT 1 cut(s) 218
Eco32I GATATC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 471
Eco72I CACGTG 1 cut(s) 186
EcoRII CCWGG 3 cut(s) 118, 132, 213
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 2 cut(s) 420, 438
ErhI CCWWGG 2 cut(s) 420, 438
FaeI CATG 3 cut(s) 293, 380, 483
FaiI YATR 7 cut(s) 32, 181, 200, 291, 378, 430, 481
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 289, 376, 479
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 2 cut(s) 152, 339
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
GsuI CTGGAG 2 cut(s) 102, 288
HaeIII GGCC 3 cut(s) 218, 264, 282
HapII CCGG 3 cut(s) 162, 204, 324
Hin1II CATG 3 cut(s) 293, 380, 483
HinfI GANTC 2 cut(s) 96, 143
HpaII CCGG 3 cut(s) 162, 204, 324
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 6 cut(s) 101, 148, 271, 365, 451, 487
HpyAV CCTTC 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 3 cut(s) 72, 469, 492
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 3 cut(s) 293, 380, 483
Kzo9I GATC 1 cut(s) 341
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 1 cut(s) 403
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 3 cut(s) 128, 251, 275
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 4 cut(s) 4, 16, 32, 464
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 2 cut(s) 51, 366
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 7 cut(s) 95, 126, 130, 233, 251, 254, 399
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 231, 354, 369
MslI CAYNNNNRTG 2 cut(s) 184, 271
MspCI CTTAAG 1 cut(s) 353
MspI CCGG 3 cut(s) 162, 204, 324
MspR9I CCNGG 3 cut(s) 120, 134, 215
MvaI CCWGG 3 cut(s) 120, 134, 215
MwoI GCNNNNNNNGC 1 cut(s) 422
NdeII GATC 1 cut(s) 341
NlaIII CATG 3 cut(s) 293, 380, 483
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 251, 275
PceI AGGCCT 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 327
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 137
PmaCI CACGTG 1 cut(s) 186
PmlI CACGTG 1 cut(s) 186
PpsI GAGTC 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 186
Psp6I CCWGG 3 cut(s) 118, 132, 213
PspCI CACGTG 1 cut(s) 186
PspGI CCWGG 3 cut(s) 118, 132, 213
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 3 cut(s) 173, 287, 332
RsaNI GTAC 3 cut(s) 172, 286, 331
RseI CAYNNNNRTG 2 cut(s) 184, 271
SaqAI TTAA 3 cut(s) 231, 354, 369
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 3 cut(s) 120, 134, 215
SduI GDGCHC 1 cut(s) 191
SetI ASST 7 cut(s) 11, 73, 188, 199, 225, 239, 350
SfaNI GCATC 1 cut(s) 403
SmiMI CAYNNNNRTG 2 cut(s) 184, 271
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 2 cut(s) 51, 366
SseBI AGGCCT 1 cut(s) 218
SsiI CCGC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 218
StyD4I CCNGG 3 cut(s) 118, 132, 213
StyI CCWWGG 2 cut(s) 420, 438
TaiI ACGT 1 cut(s) 188
TasI AATT 2 cut(s) 51, 366
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 3 cut(s) 231, 354, 369
Tru9I TTAA 3 cut(s) 231, 354, 369
TseFI GTSAC 2 cut(s) 251, 275
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 2 cut(s) 251, 275
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 327
Vha464I CTTAAG 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.