Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008531

Physical Location & Seq

Genomic Coordinates Reverse (-)

14607238 .. 14610265

Gene Structure 3028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17090.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCCTCTACAGTTATGTGCATCAGCCCCTCACGTATATGCAGGTTTTGCTTTTGTTTATCTTGACAATGATCGGGATGCTGAAGATGCTATCCGTCACCTTGATGACAAGCCATTCGGTTATGACAAACGCAGATTATCTGTGGAATGGGCTAGGGGTGAACGTGGTCGTGAACGTGGTCATCATCTTGATGGGTCTAAATCTATGGCAAACCAGAGGCCCACAAAAACCTTGTTTGTCATCAACTTTGATCCCCTCCGCACCAGGGTTTCGGATATTGAAAGACACTTTGAACCCTATGGGAAGCTTCTTAATGTCAGAATTCGGCGGAACTTTGCATTTGTGCAGTTTGAGACTCAGGAAGAAGCTACTAAAGCCCTTCAGGGAACACACTTGAGCAAGATACTTGACCGAGTGGTTTCTGTTGAGTATGCTCTGAGAGATGATGATGAGAGAGGTGAACGACGTTATGATAGTCCTAGAAGAGGCGGTTATGGAAGGCAGGCGGATAGTCCTTATAGGAGGTCACCAAGTCCTGTGTATCGCAGGCGTCCAAGTCCTGATTATGGTCGTCCTCGCAGCCCAGCTTATGGTCGTCCTCGCAGCCCAGCTTATGGTAGGTACAATGGTCCAGCGTATGACAGGCGCAGGAGTCCTGATTATGGAAGAAATGCGAGTCCAGAGTATGGCAGATACCGCAGTCGCTCCCCTATTCGAAGATCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

244

Amino Acids

28.43

Weight (kDa)

10.25

Isoelectric Point (pI)

82.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 60	6.1e-14	RNA recognition motif
RRM_1	PF00076	99 - 160	1.3e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46610 AT2G46610 AT2G46610 AT2G46610 AT3G61860
fragaria_vesca	FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090 FvH4_7g17090
malus_domestica	MD07G1154500.v1.1
prunus_persica	Prupe.2G193200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360501
rosa_laevigata	RLG00000027802
rosa_multiflora	Rmu_ssc0000337.1_g000009
rosa_roxburghii	Rroxscaffold_4G00296040
rosa_rugosa	Rorug01G0278800 Rorug01G0278900
rosa_samantha	Rh1AG291500 Rh1BG256500 Rh1CG274100 Rh1DG286300
rosa_wichuraiana	Rw1G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccB7I	CCANNNNNTGG	3 cut(s)	590, 614, 686
AciI	CCGC	5 cut(s)	259, 328, 489, 506, 697
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	102, 365
AcyI	GRCGYC	1 cut(s)	550
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	7 cut(s)	265, 485, 566, 590, 614, 662, 686
AgsI	TTSAA	2 cut(s)	281, 293
AjnI	CCWGG	1 cut(s)	263
AluBI	AGCT	4 cut(s)	307, 368, 587, 611
AluI	AGCT	4 cut(s)	307, 368, 587, 611
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	579, 603
ApoI	RAATTY	1 cut(s)	321
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	2 cut(s)	219, 629
AsuHPI	GGTGA	4 cut(s)	89, 170, 470, 519
AsuII	TTCGAA	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	629
BaeI	ACNNNNGTAYC	4 cut(s)	613, 646, 685, 718
BbvI	GCAGC	2 cut(s)	591, 615
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	153, 480
BfmI	CTRYAG	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	2 cut(s)	580, 604
BlsI	GCNGC	2 cut(s)	581, 605
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	219, 629
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	3 cut(s)	29, 67, 76
Bpu14I	TTCGAA	1 cut(s)	715
BpuEI	CTTGAG	1 cut(s)	415
BsaAI	YACGTR	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	7 cut(s)	265, 485, 566, 590, 614, 662, 686
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	7 cut(s)	265, 485, 566, 590, 614, 662, 686
BseMII	CTCAG	2 cut(s)	371, 428
BseXI	GCAGC	2 cut(s)	591, 615
BseYI	CCCAGC	2 cut(s)	583, 607
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	220
BslI	CCNNNNNNNGG	7 cut(s)	265, 485, 566, 590, 614, 662, 686
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	715
Bsp143I	GATC	3 cut(s)	70, 250, 719
BspACI	CCGC	5 cut(s)	259, 328, 489, 506, 697
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	2 cut(s)	370, 429
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	245
BspT104I	TTCGAA	1 cut(s)	715
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	70, 250, 719
BssNI	GRCGYC	1 cut(s)	550
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	550
BstAPI	GCANNNNNTGC	1 cut(s)	47
BstBAI	YACGTR	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	504, 548
BstDEI	CTNAG	2 cut(s)	357, 437
BstEII	GGTNACC	1 cut(s)	525
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	3 cut(s)	73, 253, 722
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	70, 250, 719
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 86, 374, 696
BstNI	CCWGG	1 cut(s)	265
BstPI	GGTNACC	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	591, 615
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	504, 548
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	2 cut(s)	219, 629
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	1 cut(s)	729
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	2 cut(s)	357, 437
DpnI	GATC	3 cut(s)	72, 252, 721
DpnII	GATC	3 cut(s)	70, 250, 719
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
EciI	GGCGGA	2 cut(s)	343, 521
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	102, 365
Eco91I	GGTNACC	1 cut(s)	525
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoO65I	GGTNACC	1 cut(s)	525
EcoRI	GAATTC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	263
FaeI	CATG	1 cut(s)	732
FatI	CATG	1 cut(s)	728
Fnu4HI	GCNGC	2 cut(s)	580, 604
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	580, 604
FspBI	CTAG	2 cut(s)	153, 480
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	2 cut(s)	580, 604
GsaI	CCCAGC	2 cut(s)	587, 611
HaeIII	GGCC	1 cut(s)	220
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	1 cut(s)	648
Hin1I	GRCGYC	1 cut(s)	550
Hin1II	CATG	1 cut(s)	732
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	3 cut(s)	355, 652, 676
HphI	GGTGA	4 cut(s)	89, 170, 470, 519
Hpy166II	GTNNAC	3 cut(s)	161, 173, 461
Hpy188I	TCNGA	3 cut(s)	274, 320, 438
Hpy188III	TCNNGA	9 cut(s)	62, 74, 170, 188, 359, 560, 656, 680, 723
Hpy8I	GTNNAC	3 cut(s)	161, 173, 461
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	2 cut(s)	389, 492
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	4 cut(s)	33, 163, 175, 466
HpyCH4V	TGCA	4 cut(s)	20, 41, 338, 346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 86, 374, 696
HpyF3I	CTNAG	2 cut(s)	357, 437
HpySE526I	ACGT	4 cut(s)	33, 163, 175, 466
Hsp92I	GRCGYC	1 cut(s)	550
Hsp92II	CATG	1 cut(s)	732
HspAI	GCGC	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	70, 250, 719
LmnI	GCTCC	1 cut(s)	710
Lsp1109I	GCAGC	2 cut(s)	591, 615
LweI	GCATC	3 cut(s)	29, 67, 76
MaeI	CTAG	2 cut(s)	153, 480
MaeII	ACGT	4 cut(s)	33, 163, 175, 466
MaeIII	GTNAC	2 cut(s)	95, 525
MalI	GATC	3 cut(s)	72, 252, 721
MboI	GATC	3 cut(s)	70, 250, 719
MboII	GAAGA	5 cut(s)	95, 374, 495, 678, 729
MluCI	AATT	1 cut(s)	321
MlyI	GAGTC	3 cut(s)	349, 661, 685
MnlI	CCTC	9 cut(s)	15, 39, 210, 266, 449, 479, 516, 585, 609
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	3 cut(s)	36, 102, 189
MspR9I	CCNGG	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	47, 86, 374, 696
NdeII	GATC	3 cut(s)	70, 250, 719
NlaIII	CATG	1 cut(s)	732
NmuCI	GTSAC	2 cut(s)	95, 525
NspV	TTCGAA	1 cut(s)	715
PflMI	CCANNNNNTGG	3 cut(s)	590, 614, 686
PkrI	GCNGC	2 cut(s)	581, 605
PleI	GAGTC	3 cut(s)	349, 660, 684
PpsI	GAGTC	3 cut(s)	349, 660, 684
Ppu21I	YACGTR	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	525
PspFI	CCCAGC	2 cut(s)	583, 607
PspGI	CCWGG	1 cut(s)	263
PspPI	GGNCC	2 cut(s)	219, 629
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
RseI	CAYNNNNRTG	3 cut(s)	36, 102, 189
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	580, 604
Sau3AI	GATC	3 cut(s)	70, 250, 719
Sau96I	GGNCC	2 cut(s)	219, 629
SchI	GAGTC	3 cut(s)	349, 661, 685
ScrFI	CCNGG	1 cut(s)	265
SfaNI	GCATC	3 cut(s)	29, 67, 76
SfcI	CTRYAG	1 cut(s)	8
SfuI	TTCGAA	1 cut(s)	715
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	3 cut(s)	36, 102, 189
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	5 cut(s)	259, 328, 489, 506, 697
SspMI	CTAG	2 cut(s)	153, 480
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	4 cut(s)	36, 166, 178, 469
TaqI	TCGA	1 cut(s)	715
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseFI	GTSAC	2 cut(s)	95, 525
TseI	GCWGC	2 cut(s)	579, 603
Tsp45I	GTSAC	2 cut(s)	95, 525
TspGWI	ACGGA	1 cut(s)	83
Van91I	CCANNNNNTGG	3 cut(s)	590, 614, 686
VpaK11BI	GGWCC	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	321
XspI	CTAG	2 cut(s)	153, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.