Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Forward (+)

19568464 .. 19569507

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATTCTCAGGACATCAGATACCGCGGCGGAGACGACAGAGACGCTGCAACGACGGCTATGGCCGAGACAGAGAGGAAAAGCGCTGACGACAACAAAGGAAAACGCGATCAAAAGAGGGCGATGGCGAAACGTGGTCTCAAGTCTCTGACGGTAGCGGTTGCGGCTCCTGTGCTCGTGACGCTCTTCGCTACGTATTTCCTCGGCACAAGCGACGGATACGGGAATCGAGCTAAGTCCTCGTCGTGGATCCCACCTCTGTGGCTCCTACACACAACGTGTCTCGCTTCTAGTGGTCTGATGGGTTTGGCTGCGTGGCTTGTATGGGTTGACGGTGGCTTCCACAAGAAGCCCAATGCTCTGTATCTTTACTTAGCTCAGTTTTTGCTCTGTTTGGTTTGGGATCCGGTTACGTTCCGCGTCGGGTCGGGAGTAGCGGGGCTTGCGGTGTGGTTGGGTCAATCGGCTGCGTTATTCGGATGCTACAAGGCCTTTAATGAGATAAGTCCGGTCGCTGGTAATCTGGTAAAGCCGTGTTTGGCTTGGGCTGCCTTTGTAGCCGCTGTTAATGTAAAGCTTGCAGTCGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

196

Amino Acids

21.06

Weight (kDa)

9.34

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	53 - 193	3.9e-26	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	27, 108, 420, 587
AciI	CCGC	9 cut(s)	25, 27, 30, 158, 164, 418, 437, 446, 561
AclWI	GGATC	4 cut(s)	244, 257, 398, 411
AcoI	YGGCCR	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	246, 515
AflIII	ACRYGT	1 cut(s)	278
AleI	CACNNNNGTG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	233, 377, 577
AluI	AGCT	3 cut(s)	233, 377, 577
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	6 cut(s)	27, 36, 62, 143, 150, 287
AlwI	GGATC	4 cut(s)	244, 257, 398, 411
Aor51HI	AGCGCT	1 cut(s)	85
AoxI	GGCC	2 cut(s)	63, 489
ApeKI	GCWGC	4 cut(s)	47, 311, 467, 548
AspLEI	GCGC	1 cut(s)	86
BamHI	GGATCC	2 cut(s)	249, 403
BauI	CACGAG	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	34, 298, 454, 535
BccI	CCATC	2 cut(s)	118, 295
BceAI	ACGGC	2 cut(s)	72, 517
BciVI	GTATCC	1 cut(s)	212
BcoDI	GTCTC	6 cut(s)	27, 36, 62, 143, 150, 287
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	7 cut(s)	28, 48, 165, 312, 468, 549, 561
BlsI	GCNGC	7 cut(s)	29, 49, 166, 313, 469, 550, 562
BmiI	GGNNCC	4 cut(s)	168, 251, 266, 405
BmsI	GCATC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	25, 202
BsaWI	WCCGGW	2 cut(s)	406, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 515
BseDI	CCNNGG	2 cut(s)	25, 202
BseGI	GGATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	2 cut(s)	246, 515
BseMII	CTCAG	2 cut(s)	23, 392
BseXI	GCAGC	4 cut(s)	34, 298, 454, 535
Bsh1236I	CGCG	4 cut(s)	27, 108, 420, 587
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	65, 491
BsiEI	CGRYCG	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	407, 509
BslI	CCNNNNNNNGG	2 cut(s)	246, 515
BsmAI	GTCTC	6 cut(s)	27, 36, 62, 143, 150, 287
BsmBI	CGTCTC	2 cut(s)	27, 36
BsnI	GGCC	2 cut(s)	65, 491
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	109, 249, 403
BspACI	CCGC	9 cut(s)	25, 27, 30, 158, 164, 418, 437, 446, 561
BspANI	GGCC	2 cut(s)	65, 491
BspCNI	CTCAG	2 cut(s)	22, 391
BspFNI	CGCG	4 cut(s)	27, 108, 420, 587
BspLI	GGNNCC	4 cut(s)	168, 251, 266, 405
BspPI	GGATC	4 cut(s)	244, 257, 398, 411
BspQI	GCTCTTC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	25, 202
BssMI	GATC	3 cut(s)	109, 249, 403
BssSI	CACGAG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	154, 335
Bst6I	CTCTTC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	444, 579
BstDEI	CTNAG	4 cut(s)	9, 234, 373, 378
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	4 cut(s)	27, 108, 420, 587
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	112, 252, 406
BstMAI	GTCTC	6 cut(s)	27, 36, 62, 143, 150, 287
BstMBI	GATC	3 cut(s)	109, 249, 403
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 164, 181, 443, 548, 557
BstSNI	TACGTA	1 cut(s)	195
BstUI	CGCG	4 cut(s)	27, 108, 420, 587
BstV1I	GCAGC	4 cut(s)	34, 298, 454, 535
BstX2I	RGATCY	2 cut(s)	249, 403
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	2 cut(s)	249, 403
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	65, 491
BtgI	CCRYGG	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	444, 579
CfoI	GCGC	1 cut(s)	86
Cfr42I	CCGCGG	1 cut(s)	28
CseI	GACGC	3 cut(s)	53, 190, 409
DdeI	CTNAG	4 cut(s)	9, 234, 373, 378
DpnI	GATC	3 cut(s)	111, 251, 405
DpnII	GATC	3 cut(s)	109, 249, 403
DraIII	CACNNNGTG	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	45
Eco105I	TACGTA	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	491
Eco31I	GGTCTC	1 cut(s)	143
Eco47III	AGCGCT	1 cut(s)	85
Esp3I	CGTCTC	2 cut(s)	27, 36
FaiI	YATR	2 cut(s)	62, 325
FauI	CCCGC	1 cut(s)	430
Fnu4HI	GCNGC	7 cut(s)	28, 48, 165, 312, 468, 549, 561
FokI	GGATG	1 cut(s)	492
Fsp4HI	GCNGC	7 cut(s)	28, 48, 165, 312, 468, 549, 561
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	7 cut(s)	28, 48, 165, 312, 468, 549, 561
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	65, 491
HapII	CCGG	2 cut(s)	407, 509
HgaI	GACGC	3 cut(s)	53, 190, 409
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	2 cut(s)	5, 226
HpaII	CCGG	2 cut(s)	407, 509
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	4 cut(s)	20, 150, 300, 479
Hpy188III	TCNNGA	3 cut(s)	11, 178, 429
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	4 cut(s)	58, 218, 247, 425
HpyCH4III	ACNGT	2 cut(s)	154, 335
HpyCH4IV	ACGT	4 cut(s)	133, 194, 278, 413
HpyCH4V	TGCA	2 cut(s)	50, 581
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 164, 181, 443, 548, 557
HpyF3I	CTNAG	4 cut(s)	9, 234, 373, 378
HpySE526I	ACGT	4 cut(s)	133, 194, 278, 413
HspAI	GCGC	1 cut(s)	84
KspI	CCGCGG	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	109, 249, 403
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	2 cut(s)	172, 270
LpnPI	CCDG	5 cut(s)	183, 420, 501, 509, 522
Lsp1109I	GCAGC	4 cut(s)	34, 298, 454, 535
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	4 cut(s)	133, 194, 278, 413
MaeIII	GTNAC	2 cut(s)	178, 409
MalI	GATC	3 cut(s)	111, 251, 405
MboI	GATC	3 cut(s)	109, 249, 403
MboII	GAAGA	1 cut(s)	178
MflI	RGATCY	2 cut(s)	249, 403
MhlI	GDGCHC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	69, 111, 212, 250, 267
MseI	TTAA	2 cut(s)	495, 567
MslI	CAYNNNNRTG	1 cut(s)	259
MspA1I	CMGCKG	2 cut(s)	27, 563
MspI	CCGG	2 cut(s)	407, 509
MvnI	CGCG	4 cut(s)	27, 108, 420, 587
MwoI	GCNNNNNNNGC	6 cut(s)	56, 164, 181, 443, 548, 557
NdeII	GATC	3 cut(s)	109, 249, 403
NlaIV	GGNNCC	4 cut(s)	168, 251, 266, 405
NmeAIII	GCCGAG	2 cut(s)	91, 183
NmuCI	GTSAC	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	5, 226
PkrI	GCNGC	7 cut(s)	29, 49, 166, 313, 469, 550, 562
Ppu21I	YACGTR	1 cut(s)	195
PspN4I	GGNNCC	4 cut(s)	168, 251, 266, 405
PsuI	RGATCY	2 cut(s)	249, 403
RseI	CAYNNNNRTG	1 cut(s)	259
SacII	CCGCGG	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	495, 567
SatI	GCNGC	7 cut(s)	28, 48, 165, 312, 468, 549, 561
Sau3AI	GATC	3 cut(s)	109, 249, 403
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	8 cut(s)	136, 197, 235, 259, 281, 379, 416, 579
SfaNI	GCATC	1 cut(s)	470
Sfr303I	CCGCGG	1 cut(s)	28
SgrBI	CCGCGG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SnaBI	TACGTA	1 cut(s)	195
SseBI	AGGCCT	1 cut(s)	491
SsiI	CCGC	9 cut(s)	25, 27, 30, 158, 164, 418, 437, 446, 561
SspMI	CTAG	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	154, 335
TaiI	ACGT	4 cut(s)	136, 197, 281, 416
TaqI	TCGA	1 cut(s)	229
TauI	GCSGC	3 cut(s)	30, 167, 563
TfiI	GAWTC	2 cut(s)	5, 226
Tru1I	TTAA	2 cut(s)	495, 567
Tru9I	TTAA	2 cut(s)	495, 567
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	47, 311, 467, 548
Tsp45I	GTSAC	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	231
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.