Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Forward (+)

21952213 .. 21952788

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G258500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGATTCCCAGAACCTCAAACAACGCAGAACAGACGATCCCGACACCGCTGCCGCCACCACCACCATGAACAAGAGCAATTACAAAAGCAAAAAGGATATGCGGATGGACATGGCCAAACGCGGCCTTAGATCATTGGCCGTGGCGGTTGCAATCCCTGTCTCTCTCCACCTGCTTGCTATTTACTTGGGCTCCACCGACAACTACCCCACCGGCTCCTCCAAGCCCTTCTGGTTCCCGCCCTTGTGGGCCCTGCGCTTCATTTGCCTGGCTTCCAGTTTCTTGATGGGTCTCTCGGCTTGGCTTGTGTGGGCTGACGGTGGCTTCCACAAGAATCCCACGGCTCTGCCTCTTTATCTGGCCCAGCTAGGATTGAATTTGATTTGGGATCCGATTGTGTTTGGGGCAGGAGCGCCTTGGGTCGGGTTGCTGGTGTCCATGGGTATGTTTGGGACTATGGTTGCCTGTACTCGGGTGTTCAAGAATATCAATCCAGTTGCAGGTGATCTGATGAAGCCCACTTTGGCATGGGTTGCCTTTTTGGCCATTGTAAATCTTAAGCTAGTGTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

192

Amino Acids

21.02

Weight (kDa)

9.73

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	180, 491
Acc36I	ACCTGC	2 cut(s)	180, 491
AccII	CGCG	1 cut(s)	123
AciI	CCGC	6 cut(s)	48, 54, 103, 123, 146, 239
AclWI	GGATC	3 cut(s)	32, 383, 396
AcoI	YGGCCR	3 cut(s)	114, 138, 543
AcsI	RAATTY	1 cut(s)	376
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	3 cut(s)	422, 471, 500
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	376, 481
AjnI	CCWGG	1 cut(s)	267
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	2 cut(s)	367, 562
AluI	AGCT	2 cut(s)	367, 562
Alw26I	GTCTC	2 cut(s)	166, 296
AlwI	GGATC	3 cut(s)	32, 383, 396
Ama87I	CYCGRG	1 cut(s)	471
AoxI	GGCC	6 cut(s)	114, 124, 138, 249, 360, 543
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	2 cut(s)	258, 415
AspS9I	GGNCC	3 cut(s)	249, 250, 361
AsuHPI	GGTGA	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	471
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	2 cut(s)	116, 545
BamHI	GGATCC	1 cut(s)	388
BanII	GRGCYC	2 cut(s)	194, 253
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	100, 280
BceAI	ACGGC	2 cut(s)	125, 357
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	166, 296
BfaI	CTAG	2 cut(s)	368, 563
BfoI	RGCGCY	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	557
BfuAI	ACCTGC	2 cut(s)	180, 491
BglI	GCCNNNNNGGC	1 cut(s)	542
BisI	GCNGC	3 cut(s)	51, 54, 124
BlsI	GCNGC	3 cut(s)	52, 55, 125
Bme1390I	CCNGG	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	471
BmgT120I	GGNCC	3 cut(s)	249, 250, 361
BmiI	GGNNCC	5 cut(s)	193, 217, 236, 251, 390
BmrFI	CCNGG	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	141, 339, 416, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 471, 500
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	2 cut(s)	276, 494
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	4 cut(s)	141, 339, 416, 438
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	422, 471, 500
BseNI	ACTGG	2 cut(s)	276, 494
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	6 cut(s)	116, 126, 140, 251, 362, 545
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	3 cut(s)	422, 471, 500
BsmAI	GTCTC	2 cut(s)	166, 296
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	6 cut(s)	116, 126, 140, 251, 362, 545
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	471
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	194, 253
Bsp143I	GATC	4 cut(s)	37, 131, 388, 505
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	6 cut(s)	48, 54, 103, 123, 146, 239
BspANI	GGCC	6 cut(s)	116, 126, 140, 251, 362, 545
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	5 cut(s)	193, 217, 236, 251, 390
BspMI	ACCTGC	2 cut(s)	180, 491
BspPI	GGATC	3 cut(s)	32, 383, 396
BspTI	CTTAAG	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	276, 494
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	4 cut(s)	141, 339, 416, 438
BssMI	GATC	4 cut(s)	37, 131, 388, 505
BssT1I	CCWWGG	2 cut(s)	416, 438
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	3 cut(s)	141, 339, 438
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	2 cut(s)	258, 415
BstKTI	GATC	4 cut(s)	40, 134, 391, 508
BstMAI	GTCTC	2 cut(s)	166, 296
BstMBI	GATC	4 cut(s)	37, 131, 388, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 533, 542
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	6 cut(s)	116, 126, 140, 251, 362, 545
BtgI	CCRYGG	3 cut(s)	141, 339, 438
BtsCI	GGATG	1 cut(s)	111
BveI	ACCTGC	2 cut(s)	180, 491
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	2 cut(s)	258, 415
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	249, 250, 361
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	4 cut(s)	67, 112, 439, 528
CviQI	GTAC	1 cut(s)	468
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	4 cut(s)	39, 133, 390, 507
DpnII	GATC	4 cut(s)	37, 131, 388, 505
EaeI	YGGCCR	3 cut(s)	114, 138, 543
Eco130I	CCWWGG	2 cut(s)	416, 438
Eco24I	GRGCYC	2 cut(s)	194, 253
Eco31I	GGTCTC	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	471
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	416, 438
EcoT38I	GRGCYC	2 cut(s)	194, 253
ErhI	CCWWGG	2 cut(s)	416, 438
FaeI	CATG	4 cut(s)	70, 115, 442, 531
FaiI	YATR	7 cut(s)	68, 101, 113, 440, 446, 458, 529
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	66, 111, 438, 527
FauI	CCCGC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	51, 54, 124
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	2 cut(s)	194, 253
Fsp4HI	GCNGC	3 cut(s)	51, 54, 124
FspBI	CTAG	2 cut(s)	368, 563
GlaI	GCGC	2 cut(s)	257, 414
GluI	GCNGC	3 cut(s)	51, 54, 124
GsaI	CCCAGC	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	6 cut(s)	116, 126, 140, 251, 362, 545
HapII	CCGG	1 cut(s)	213
HhaI	GCGC	2 cut(s)	258, 415
Hin1II	CATG	4 cut(s)	70, 115, 442, 531
Hin6I	GCGC	2 cut(s)	256, 413
HinP1I	GCGC	2 cut(s)	256, 413
HinfI	GANTC	2 cut(s)	5, 334
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	1 cut(s)	515
Hpy188I	TCNGA	2 cut(s)	393, 510
Hpy188III	TCNNGA	3 cut(s)	41, 283, 481
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	2 cut(s)	152, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 533, 542
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	70, 115, 442, 531
HspAI	GCGC	2 cut(s)	256, 413
Kzo9I	GATC	4 cut(s)	37, 131, 388, 505
LmnI	GCTCC	3 cut(s)	197, 221, 410
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	368, 563
MalI	GATC	4 cut(s)	39, 133, 390, 507
MboI	GATC	4 cut(s)	37, 131, 388, 505
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	194, 253
MlsI	TGGCCA	2 cut(s)	116, 545
MluCI	AATT	2 cut(s)	79, 376
MluNI	TGGCCA	2 cut(s)	116, 545
MnlI	CCTC	3 cut(s)	26, 229, 360
Mox20I	TGGCCA	2 cut(s)	116, 545
MscI	TGGCCA	2 cut(s)	116, 545
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	65, 443
Msp20I	TGGCCA	2 cut(s)	116, 545
MspA1I	CMGCKG	1 cut(s)	50
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	264, 533, 542
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	4 cut(s)	37, 131, 388, 505
NlaIII	CATG	4 cut(s)	70, 115, 442, 531
NlaIV	GGNNCC	5 cut(s)	193, 217, 236, 251, 390
NmeAIII	GCCGAG	1 cut(s)	275
PaqCI	CACCTGC	2 cut(s)	180, 491
PfeI	GAWTC	2 cut(s)	5, 334
PkrI	GCNGC	3 cut(s)	52, 55, 125
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	5 cut(s)	193, 217, 236, 251, 390
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	3 cut(s)	249, 250, 361
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
RseI	CAYNNNNRTG	2 cut(s)	65, 443
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	3 cut(s)	51, 54, 124
Sau3AI	GATC	4 cut(s)	37, 131, 388, 505
Sau96I	GGNCC	3 cut(s)	249, 250, 361
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	2 cut(s)	194, 253
SetI	ASST	5 cut(s)	18, 174, 369, 505, 564
SmiMI	CAYNNNNRTG	2 cut(s)	65, 443
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	2 cut(s)	79, 376
SsiI	CCGC	6 cut(s)	48, 54, 103, 123, 146, 239
SspMI	CTAG	2 cut(s)	368, 563
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	416, 438
TaaI	ACNGT	1 cut(s)	320
TasI	AATT	2 cut(s)	79, 376
TatI	WGTACW	1 cut(s)	467
TauI	GCSGC	2 cut(s)	56, 126
TfiI	GAWTC	2 cut(s)	5, 334
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	83, 250, 527
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	368, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.