Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Reverse (-)

13854410 .. 13854991

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATTCCCAAAACCTCAAGCAGCGTAGGGTTGCCGACGACCCTAACACCACCACGAGCACCGCAGCCACAATGAACAAGAACAAGCTGTGGCGGTTTCGCTCCCGGTGGCTCTACCCAAGCAAACGCGACATGAGAATGAAAATGGCCAAACGCGGCCTAAGGTCACTAGCTGTGGCGGTTTCGCTCCCGGTGGCTCTCCACCTCATCACTATTTACTTGGGATCGACCGACAGCTACCGCACCACCTCCAAGCCCTTCTGGTTCCCGCCTCTGTGGGGCTTGCGTCTGACTTGCTTGGCTTCGAGTTTCTTGATGGGTCTCTCGGCTTGGCTTGTGTGGGCGGAAGGTGGGTTTCACAAGAATCCTGTGGCTTTTCCAGTTTATTTGTCTCAGCTAGTCTTGAGTTTGGCATGGGATCCGATCGTGTTTGGGGCCGGAGCTCCATGGGTCGGGCTCGTTGTGTGCATGGGGATGTTCGGGGCTCTGGTTGGGTGTTCGAAGGTGTTTCAGGACGTGAATCCGACTGCCTGTGATCTCATGAAGCCTTGTTTGGCTTGGGTTGCTTTTTGGCCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

193

Amino Acids

21.62

Weight (kDa)

9.93

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	61 - 190	4.3e-29	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	129, 156
AciI	CCGC	7 cut(s)	63, 94, 156, 179, 241, 269, 344
AclWI	GGATC	3 cut(s)	232, 413, 426
AcoI	YGGCCR	2 cut(s)	147, 572
AfiI	CCNNNNNNNGG	2 cut(s)	278, 452
AjiI	CACGTC	1 cut(s)	517
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	5 cut(s)	88, 173, 237, 397, 443
AluI	AGCT	5 cut(s)	88, 173, 237, 397, 443
Alw21I	GWGCWC	2 cut(s)	62, 445
Alw26I	GTCTC	2 cut(s)	326, 396
AlwI	GGATC	3 cut(s)	232, 413, 426
AoxI	GGCC	4 cut(s)	147, 157, 435, 572
ApeKI	GCWGC	2 cut(s)	22, 65
AspS9I	GGNCC	1 cut(s)	435
AsuC2I	CCSGG	2 cut(s)	106, 191
AsuII	TTCGAA	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	418
BanII	GRGCYC	3 cut(s)	445, 459, 487
BauI	CACGAG	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	62, 445
BbvI	GCAGC	2 cut(s)	34, 77
BccI	CCATC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	559
BcnI	CCSGG	2 cut(s)	106, 191
BcoDI	GTCTC	2 cut(s)	326, 396
BfaI	CTAG	2 cut(s)	170, 398
BisI	GCNGC	3 cut(s)	23, 66, 157
BlsI	GCNGC	3 cut(s)	24, 67, 158
Bme1390I	CCNGG	2 cut(s)	106, 191
BmgBI	CACGTC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	3 cut(s)	266, 420, 436
BmrFI	CCNGG	2 cut(s)	106, 191
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	424
BpuMI	CCSGG	2 cut(s)	106, 191
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 452
Bse1I	ACTGG	1 cut(s)	380
Bse21I	CCTNAGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	278, 452
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	34, 77
Bsh1236I	CGCG	2 cut(s)	129, 156
Bsh1285I	CGRYCG	2 cut(s)	231, 426
BshFI	GGCC	4 cut(s)	149, 159, 437, 574
BsiEI	CGRYCG	2 cut(s)	231, 426
BsiHKAI	GWGCWC	2 cut(s)	62, 445
BsiSI	CCGG	3 cut(s)	106, 191, 438
BslI	CCNNNNNNNGG	2 cut(s)	278, 452
BsmAI	GTCTC	2 cut(s)	326, 396
BsnI	GGCC	4 cut(s)	149, 159, 437, 574
Bso31I	GGTCTC	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	4 cut(s)	62, 445, 459, 487
Bsp143I	GATC	4 cut(s)	224, 418, 423, 535
Bsp19I	CCATGG	1 cut(s)	446
BspACI	CCGC	7 cut(s)	63, 94, 156, 179, 241, 269, 344
BspANI	GGCC	4 cut(s)	149, 159, 437, 574
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	2 cut(s)	129, 156
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	3 cut(s)	266, 420, 436
BspPI	GGATC	3 cut(s)	232, 413, 426
BspT104I	TTCGAA	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	4 cut(s)	224, 418, 423, 535
BssSI	CACGAG	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	161, 393
BstDSI	CCRYGG	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	480
BstFNI	CGCG	2 cut(s)	129, 156
BstKTI	GATC	4 cut(s)	227, 421, 426, 538
BstMAI	GTCTC	2 cut(s)	326, 396
BstMBI	GATC	4 cut(s)	224, 418, 423, 535
BstMCI	CGRYCG	2 cut(s)	231, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstSCI	CCNGG	2 cut(s)	104, 189
BstUI	CGCG	2 cut(s)	129, 156
BstV1I	GCAGC	2 cut(s)	34, 77
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
Bsu36I	CCTNAGG	1 cut(s)	161
BsuRI	GGCC	4 cut(s)	149, 159, 437, 574
BtgI	CCRYGG	1 cut(s)	446
BtrI	CACGTC	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	284
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	435
CseI	GACGC	1 cut(s)	275
CviAII	CATG	5 cut(s)	133, 414, 447, 469, 541
DdeI	CTNAG	2 cut(s)	161, 393
DpnI	GATC	4 cut(s)	226, 420, 425, 537
DpnII	GATC	4 cut(s)	224, 418, 423, 535
EaeI	YGGCCR	2 cut(s)	147, 572
EciI	GGCGGA	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	3 cut(s)	445, 459, 487
Eco31I	GGTCTC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	443
Eco81I	CCTNAGG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	3 cut(s)	445, 459, 487
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	5 cut(s)	136, 417, 450, 472, 544
FaiI	YATR	5 cut(s)	134, 415, 448, 470, 542
FatI	CATG	5 cut(s)	132, 413, 446, 468, 540
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	23, 66, 157
FokI	GGATG	1 cut(s)	487
FriOI	GRGCYC	3 cut(s)	445, 459, 487
Fsp4HI	GCNGC	3 cut(s)	23, 66, 157
FspBI	CTAG	2 cut(s)	170, 398
GluI	GCNGC	3 cut(s)	23, 66, 157
HaeIII	GGCC	4 cut(s)	149, 159, 437, 574
HapII	CCGG	3 cut(s)	106, 191, 438
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	5 cut(s)	136, 417, 450, 472, 544
HinfI	GANTC	3 cut(s)	5, 364, 520
HpaII	CCGG	3 cut(s)	106, 191, 438
Hpy188I	TCNGA	3 cut(s)	291, 423, 525
Hpy188III	TCNNGA	4 cut(s)	313, 403, 512, 541
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	268, 341, 496
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	161, 393
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	5 cut(s)	136, 417, 450, 472, 544
Kzo9I	GATC	4 cut(s)	224, 418, 423, 535
LmnI	GCTCC	4 cut(s)	107, 192, 440, 448
LpnPI	CCDG	9 cut(s)	119, 204, 247, 381, 393, 451, 473, 497, 544
Lsp1109I	GCAGC	2 cut(s)	34, 77
MaeI	CTAG	2 cut(s)	170, 398
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	4 cut(s)	226, 420, 425, 537
MboI	GATC	4 cut(s)	224, 418, 423, 535
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	4 cut(s)	62, 445, 459, 487
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	4 cut(s)	26, 215, 259, 282
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MslI	CAYNNNNRTG	2 cut(s)	137, 473
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	3 cut(s)	106, 191, 438
MspR9I	CCNGG	2 cut(s)	106, 191
MvnI	CGCG	2 cut(s)	129, 156
MwoI	GCNNNNNNNGC	1 cut(s)	563
NciI	CCSGG	2 cut(s)	106, 191
NcoI	CCATGG	1 cut(s)	446
NdeII	GATC	4 cut(s)	224, 418, 423, 535
NlaIII	CATG	5 cut(s)	136, 417, 450, 472, 544
NlaIV	GGNNCC	3 cut(s)	266, 420, 436
NmeAIII	GCCGAG	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	500
PagI	TCATGA	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	5, 364, 520
PkrI	GCNGC	3 cut(s)	24, 67, 158
Ple19I	CGATCG	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	266, 420, 436
PspPI	GGNCC	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	418
PvuI	CGATCG	1 cut(s)	426
RseI	CAYNNNNRTG	2 cut(s)	137, 473
SacI	GAGCTC	1 cut(s)	445
SatI	GCNGC	3 cut(s)	23, 66, 157
Sau3AI	GATC	4 cut(s)	224, 418, 423, 535
Sau96I	GGNCC	1 cut(s)	435
ScrFI	CCNGG	2 cut(s)	106, 191
SduI	GDGCHC	4 cut(s)	62, 445, 459, 487
SfuI	TTCGAA	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	137, 473
SmlI	CTYRAG	2 cut(s)	17, 403
SmoI	CTYRAG	2 cut(s)	17, 403
SsiI	CCGC	7 cut(s)	63, 94, 156, 179, 241, 269, 344
SspMI	CTAG	2 cut(s)	170, 398
SstI	GAGCTC	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	104, 189
StyI	CCWWGG	1 cut(s)	446
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	3 cut(s)	227, 305, 500
TaqII	GACCGA	1 cut(s)	245
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	5, 364, 520
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	2 cut(s)	22, 65
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	89, 155, 557
XspI	CTAG	2 cut(s)	170, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.