Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Forward (+)

22685193 .. 22685771

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATAATTATTCCGACCACCTCAAGCAACGCAGGGCAGATGACCCTACCACCGCCGCCGTGCCCACCGTCCCTATCCGTGGCAGTCGCAATCCCCGTCTCTCTCCACCTCCTGGCTATCTACGCGGGCTCATCCGACCCATATCGCATCGGATCCAAGCCCTTCTGGATCCCTCCCCTGTGGGCCCTGCGATTAACCTGCATAGCCTCCAGCTTTCTCATGGGCCTGGCTGCTTGGCTCGTGTGGGGTTGAGCTTGATTTGGGATCCGATTGTGTTCGGGGCGGGGGCTCCGTGGGTCGGGTTGATCGTGTGCATGGGGATGTTCGGGGCGATGATCGGGTGTTCTCGGGTGTTTAAGGGTGTGAATCCGCTCGCTGCCGATCTTATAAAGCCGAGCTTGGCGTGGGTTGCGTTTTTGGCCGTCGTAAATCTTAAGCTTGTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

151

Amino Acids

16.09

Weight (kDa)

10.04

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	1 cut(s)	126
AciI	CCGC	5 cut(s)	54, 57, 126, 284, 371
AclWI	GGATC	6 cut(s)	148, 161, 164, 177, 260, 273
AcoI	YGGCCR	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	80, 113, 299
AflII	CTTAAG	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	112, 226
AluBI	AGCT	4 cut(s)	214, 255, 399, 439
AluI	AGCT	4 cut(s)	214, 255, 399, 439
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	6 cut(s)	148, 161, 164, 177, 260, 273
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	3 cut(s)	184, 224, 420
ApaI	GGGCCC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	231, 377
AspS9I	GGNCC	3 cut(s)	184, 185, 224
AvaI	CYCGRG	1 cut(s)	348
BaeGI	GKGCMC	2 cut(s)	66, 188
BamHI	GGATCC	3 cut(s)	153, 169, 265
BanII	GRGCYC	3 cut(s)	132, 188, 292
BauI	CACGAG	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	218, 364
BceAI	ACGGC	2 cut(s)	44, 407
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	2 cut(s)	114, 228
BcoDI	GTCTC	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	207
BisI	GCNGC	3 cut(s)	57, 232, 378
BlsI	GCNGC	3 cut(s)	58, 233, 379
Bme1390I	CCNGG	2 cut(s)	114, 228
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	3 cut(s)	184, 185, 224
BmiI	GGNNCC	5 cut(s)	155, 171, 186, 267, 291
BmrFI	CCNGG	2 cut(s)	114, 228
BmsI	GCATC	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	79, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 113, 299
BseBI	CCWGG	2 cut(s)	114, 228
BseDI	CCNNGG	2 cut(s)	79, 293
BseGI	GGATG	2 cut(s)	132, 327
BseLI	CCNNNNNNNGG	3 cut(s)	80, 113, 299
BseSI	GKGCMC	2 cut(s)	66, 188
BseXI	GCAGC	2 cut(s)	218, 364
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	186, 226, 422
BsiHKCI	CYCGRG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	80, 113, 299
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	3 cut(s)	186, 226, 422
BsoBI	CYCGRG	1 cut(s)	348
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	4 cut(s)	66, 132, 188, 292
Bsp143I	GATC	6 cut(s)	153, 169, 265, 306, 336, 382
BspACI	CCGC	5 cut(s)	54, 57, 126, 284, 371
BspANI	GGCC	3 cut(s)	186, 226, 422
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	5 cut(s)	155, 171, 186, 267, 291
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	6 cut(s)	148, 161, 164, 177, 260, 273
BspTI	CTTAAG	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	79, 293
BssMI	GATC	6 cut(s)	153, 169, 265, 306, 336, 382
BssSI	CACGAG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	114, 228
Bst4CI	ACNGT	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	128, 375
BstDSI	CCRYGG	2 cut(s)	79, 293
BstF5I	GGATG	2 cut(s)	132, 327
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	6 cut(s)	156, 172, 268, 309, 339, 385
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	6 cut(s)	153, 169, 265, 306, 336, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 410, 419
BstNI	CCWGG	2 cut(s)	114, 228
BstSCI	CCNGG	2 cut(s)	112, 226
BstSLI	GKGCMC	2 cut(s)	66, 188
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	218, 364
BstX2I	RGATCY	3 cut(s)	153, 169, 265
BstYI	RGATCY	3 cut(s)	153, 169, 265
BsuRI	GGCC	3 cut(s)	186, 226, 422
BtgI	CCRYGG	2 cut(s)	79, 293
BtgZI	GCGATG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	132, 327
BtsIMutI	CAGTG	1 cut(s)	448
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	128, 375
Cfr13I	GGNCC	3 cut(s)	184, 185, 224
CviAII	CATG	2 cut(s)	221, 316
DpnI	GATC	6 cut(s)	155, 171, 267, 308, 338, 384
DpnII	GATC	6 cut(s)	153, 169, 265, 306, 336, 382
EaeI	YGGCCR	1 cut(s)	420
Eco24I	GRGCYC	3 cut(s)	132, 188, 292
Eco88I	CYCGRG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	112, 226
EcoT38I	GRGCYC	3 cut(s)	132, 188, 292
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	2 cut(s)	224, 319
FaiI	YATR	5 cut(s)	143, 204, 222, 317, 389
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	220, 315
FauI	CCCGC	2 cut(s)	119, 277
Fnu4HI	GCNGC	3 cut(s)	57, 232, 378
FokI	GGATG	2 cut(s)	119, 334
FriOI	GRGCYC	3 cut(s)	132, 188, 292
Fsp4HI	GCNGC	3 cut(s)	57, 232, 378
GluI	GCNGC	3 cut(s)	57, 232, 378
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	186, 226, 422
Hin1II	CATG	2 cut(s)	224, 319
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	16, 137, 153, 270
Hpy188III	TCNNGA	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	202, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 410, 419
Hsp92II	CATG	2 cut(s)	224, 319
Kzo9I	GATC	6 cut(s)	153, 169, 265, 306, 336, 382
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	218, 364
LweI	GCATC	1 cut(s)	157
MalI	GATC	6 cut(s)	155, 171, 267, 308, 338, 384
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	6 cut(s)	153, 169, 265, 306, 336, 382
MflI	RGATCY	3 cut(s)	153, 169, 265
MhlI	GDGCHC	4 cut(s)	66, 132, 188, 292
MluCI	AATT	1 cut(s)	7
MmeI	TCCRAC	2 cut(s)	39, 160
MnlI	CCTC	4 cut(s)	32, 120, 184, 218
MseI	TTAA	3 cut(s)	195, 357, 435
MslI	CAYNNNNRTG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	114, 228
MvaI	CCWGG	2 cut(s)	114, 228
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	123, 410, 419
NdeII	GATC	6 cut(s)	153, 169, 265, 306, 336, 382
NlaIII	CATG	2 cut(s)	224, 319
NlaIV	GGNNCC	5 cut(s)	155, 171, 186, 267, 291
NmeAIII	GCCGAG	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	2 cut(s)	94, 306
PfeI	GAWTC	1 cut(s)	367
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	58, 233, 379
PsiI	TTATAA	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	112, 226
PspGI	CCWGG	2 cut(s)	112, 226
PspN4I	GGNNCC	5 cut(s)	155, 171, 186, 267, 291
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	184, 185, 224
PsuI	RGATCY	3 cut(s)	153, 169, 265
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	195, 357, 435
SatI	GCNGC	3 cut(s)	57, 232, 378
Sau3AI	GATC	6 cut(s)	153, 169, 265, 306, 336, 382
Sau96I	GGNCC	3 cut(s)	184, 185, 224
ScrFI	CCNGG	2 cut(s)	114, 228
SduI	GDGCHC	4 cut(s)	66, 132, 188, 292
SetI	ASST	7 cut(s)	24, 112, 201, 216, 257, 401, 441
SfaNI	GCATC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	23, 434
SmoI	CTYRAG	2 cut(s)	23, 434
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	5 cut(s)	54, 57, 126, 284, 371
StyD4I	CCNGG	2 cut(s)	112, 226
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	1 cut(s)	7
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	3 cut(s)	195, 357, 435
Tru9I	TTAA	3 cut(s)	195, 357, 435
TseI	GCWGC	2 cut(s)	231, 377
TspGWI	ACGGA	2 cut(s)	68, 282
Van91I	CCANNNNNTGG	1 cut(s)	113
Vha464I	CTTAAG	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.