Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Forward (+)

41968616 .. 41968924

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1304700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCCTCCAGCTTCCTCATGGGCCTGGCCGCTTGGTTAGTGTGGGCCGAAGGTGGTTTCCATAAGAACCCGATGGCCTTGCCCATTTACTTGGCCCAGCTAGGGTTGAGCTTGATTTGGGATCCGATTGTGTTCGGGGCGGGGGCTCCGTGGGTCGGGTTGATCGTGTGCATGGGGATGTTCGGGGCGATGATCGGGTGTTCTCGGGTGTTTAAGGATGTGAATCCGGTCGCCGCCGATCTTATGAAGCCGAGTTTGGCATGGGTTGCGTTTTTGGCCGTTGTAAATCTGAAGCTTGTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

103

Amino Acids

10.98

Weight (kDa)

7.83

Isoelectric Point (pI)

17.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	4 - 99	1e-26	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	30, 140, 234
AclWI	GGATC	2 cut(s)	116, 129
AcoI	YGGCCR	2 cut(s)	27, 276
AfiI	CCNNNNNNNGG	2 cut(s)	102, 155
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	4 cut(s)	12, 100, 111, 295
AluI	AGCT	4 cut(s)	12, 100, 111, 295
AlwI	GGATC	2 cut(s)	116, 129
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	7 cut(s)	3, 22, 27, 45, 75, 93, 276
AspS9I	GGNCC	3 cut(s)	22, 45, 94
AvaI	CYCGRG	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	148
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	1 cut(s)	26
BfaI	CTAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	30, 234
BlsI	GCNGC	2 cut(s)	31, 235
Bme1390I	CCNGG	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	3 cut(s)	22, 45, 94
BmiI	GGNNCC	2 cut(s)	123, 147
BmrFI	CCNGG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 155
Bse8I	GATNNNNATC	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	183, 223
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	102, 155
BseYI	CCCAGC	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	7 cut(s)	5, 24, 29, 47, 77, 95, 278
BsiEI	CGRYCG	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	102, 155
BsnI	GGCC	7 cut(s)	5, 24, 29, 47, 77, 95, 278
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	121, 162, 192, 238
BspACI	CCGC	3 cut(s)	30, 140, 234
BspANI	GGCC	7 cut(s)	5, 24, 29, 47, 77, 95, 278
BspLI	GGNNCC	2 cut(s)	123, 147
BspPI	GGATC	2 cut(s)	116, 129
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	4 cut(s)	121, 162, 192, 238
Bst2UI	CCWGG	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	183, 223
BstKTI	GATC	4 cut(s)	124, 165, 195, 241
BstMBI	GATC	4 cut(s)	121, 162, 192, 238
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 275
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	7 cut(s)	5, 24, 29, 47, 77, 95, 278
BtgI	CCRYGG	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	183, 223
BtsIMutI	CAGTG	1 cut(s)	304
Cfr13I	GGNCC	3 cut(s)	22, 45, 94
CviAII	CATG	3 cut(s)	19, 172, 261
DpnI	GATC	4 cut(s)	123, 164, 194, 240
DpnII	GATC	4 cut(s)	121, 162, 192, 238
EaeI	YGGCCR	2 cut(s)	27, 276
Eco24I	GRGCYC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	3 cut(s)	22, 175, 264
FaiI	YATR	5 cut(s)	20, 63, 173, 245, 262
FatI	CATG	3 cut(s)	18, 171, 260
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	30, 234
FokI	GGATG	2 cut(s)	190, 230
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	30, 234
FspBI	CTAG	1 cut(s)	101
GluI	GCNGC	2 cut(s)	30, 234
GsaI	CCCAGC	1 cut(s)	100
HaeIII	GGCC	7 cut(s)	5, 24, 29, 47, 77, 95, 278
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	3 cut(s)	22, 175, 264
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	126, 291
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 275
Hsp92II	CATG	3 cut(s)	22, 175, 264
Kzo9I	GATC	4 cut(s)	121, 162, 192, 238
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	11, 22, 38, 110, 240
MaeI	CTAG	1 cut(s)	101
MalI	GATC	4 cut(s)	123, 164, 194, 240
MboI	GATC	4 cut(s)	121, 162, 192, 238
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	148
MnlI	CCTC	2 cut(s)	16, 26
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	176
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	266, 275
NdeII	GATC	4 cut(s)	121, 162, 192, 238
NlaIII	CATG	3 cut(s)	22, 175, 264
NlaIV	GGNNCC	2 cut(s)	123, 147
NmeAIII	GCCGAG	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	31, 235
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	123, 147
PspPI	GGNCC	3 cut(s)	22, 45, 94
PsuI	RGATCY	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	2 cut(s)	30, 234
Sau3AI	GATC	4 cut(s)	121, 162, 192, 238
Sau96I	GGNCC	3 cut(s)	22, 45, 94
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	14, 55, 102, 113, 297
SmiMI	CAYNNNNRTG	1 cut(s)	176
SsiI	CCGC	3 cut(s)	30, 140, 234
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	24
TauI	GCSGC	2 cut(s)	32, 236
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	260
TspGWI	ACGGA	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.