Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Forward (+)

20632776 .. 20634024

Gene Structure 1249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGATTCCCAAAACCTCAAACAGCGTAGGGTTGCAGACGACCCTAACACCACCATGAACAAGAACAACTACGCAGGCAAACCTGAAATGAGAATGAAAATGGCCAAACGCGGCCTAAGATCACTAGCCATCGCCGTTTCGCTCCCGGTGGCTCTCCACCTCATCACTATCTACTTGGCGTCGACGGACAGCTACCGCACGGCGTCCAAGCCCTTCTGGTTCCCGCCCATGTGGGGCTTGCGTCTGACTTGCTTGGCTTCGAGCTTCTTGATGGGTCTCTCTGCTTGGCTTGTGTGGGCGGAAGGTGGGTTTCACAAGAACCCTATGGCCTTGCCTCTGTATTTATCTCAGCTGGTGTTGAGTTTGGCGTGGGATCCGATTGTGTTCGGGGCGGGAGCTCCGTGGGTCGGGTTGGTTGTGTGCATGGGGATGTTTGGGGCTCTGGTTGGGTGTTCCAAGGTGTTTCAGGATGTGAATGCGACTGCTGGTTATCTCATGAAGCCATGTTTGGCTTGGGTTGCTTTCTTGGCCGTTGTAAATCTTAAGCTTGTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

187

Amino Acids

20.51

Weight (kDa)

9.62

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	45 - 185	3.3e-33	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	1 cut(s)	111
AciI	CCGC	5 cut(s)	111, 196, 224, 299, 392
AclWI	GGATC	2 cut(s)	368, 381
AcoI	YGGCCR	2 cut(s)	102, 528
AcyI	GRCGYC	2 cut(s)	179, 203
AfiI	CCNNNNNNNGG	2 cut(s)	233, 407
AflII	CTTAAG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	491, 523
AluBI	AGCT	5 cut(s)	192, 264, 352, 398, 547
AluI	AGCT	5 cut(s)	192, 264, 352, 398, 547
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	368, 381
AoxI	GGCC	4 cut(s)	102, 112, 327, 528
AsuC2I	CCSGG	1 cut(s)	146
BalI	TGGCCA	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	373
BanII	GRGCYC	2 cut(s)	400, 442
Bbv12I	GWGCWC	1 cut(s)	400
BccI	CCATC	2 cut(s)	137, 265
BceAI	ACGGC	3 cut(s)	119, 216, 515
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	542
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	221, 375
BmrFI	CCNGG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	146
BsaHI	GRCGYC	2 cut(s)	179, 203
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	401, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 407
BseDI	CCNNGG	2 cut(s)	401, 456
BseGI	GGATG	2 cut(s)	435, 475
BseLI	CCNNNNNNNGG	2 cut(s)	233, 407
BseMII	CTCAG	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	4 cut(s)	104, 114, 329, 530
BsiHKAI	GWGCWC	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	233, 407
BsmAI	GTCTC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	4 cut(s)	104, 114, 329, 530
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	400, 442
Bsp143I	GATC	2 cut(s)	119, 373
BspACI	CCGC	5 cut(s)	111, 196, 224, 299, 392
BspANI	GGCC	4 cut(s)	104, 114, 329, 530
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	2 cut(s)	221, 375
BspPI	GGATC	2 cut(s)	368, 381
BspTI	CTTAAG	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	401, 456
BssMI	GATC	2 cut(s)	119, 373
BssNI	GRCGYC	2 cut(s)	179, 203
BssT1I	CCWWGG	1 cut(s)	456
BstACI	GRCGYC	2 cut(s)	179, 203
BstAFI	CTTAAG	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	76, 239
BstDEI	CTNAG	2 cut(s)	116, 348
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	435, 475
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	122, 376
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	119, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 527
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	4 cut(s)	104, 114, 329, 530
BtgI	CCRYGG	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	435, 475
Cac8I	GCNNGC	2 cut(s)	76, 239
CciI	TCATGA	1 cut(s)	495
CseI	GACGC	3 cut(s)	168, 192, 230
CviAII	CATG	5 cut(s)	55, 229, 424, 496, 504
DdeI	CTNAG	2 cut(s)	116, 348
DpnI	GATC	2 cut(s)	121, 375
DpnII	GATC	2 cut(s)	119, 373
EaeI	YGGCCR	2 cut(s)	102, 528
EciI	GGCGGA	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	400, 442
Eco31I	GGTCTC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	2 cut(s)	400, 442
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	5 cut(s)	58, 232, 427, 499, 507
FaiI	YATR	6 cut(s)	56, 230, 326, 425, 497, 505
FatI	CATG	5 cut(s)	54, 228, 423, 495, 503
FauI	CCCGC	2 cut(s)	231, 385
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	2 cut(s)	442, 482
FriOI	GRGCYC	2 cut(s)	400, 442
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	4 cut(s)	104, 114, 329, 530
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	3 cut(s)	168, 192, 230
Hin1I	GRCGYC	2 cut(s)	179, 203
Hin1II	CATG	5 cut(s)	58, 232, 427, 499, 507
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	3 cut(s)	246, 378, 560
Hpy188III	TCNNGA	3 cut(s)	268, 467, 496
Hpy8I	GTNNAC	1 cut(s)	183
Hpy99I	CGWCG	2 cut(s)	184, 187
HpyAV	CCTTC	2 cut(s)	223, 296
HpyCH4V	TGCA	2 cut(s)	35, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 527
HpyF3I	CTNAG	2 cut(s)	116, 348
Hsp92I	GRCGYC	2 cut(s)	179, 203
Hsp92II	CATG	5 cut(s)	58, 232, 427, 499, 507
Kzo9I	GATC	2 cut(s)	119, 373
LmnI	GCTCC	3 cut(s)	147, 395, 403
LpnPI	CCDG	8 cut(s)	60, 96, 159, 202, 338, 428, 452, 471
MaeI	CTAG	1 cut(s)	125
MalI	GATC	2 cut(s)	121, 375
MboI	GATC	2 cut(s)	119, 373
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	2 cut(s)	400, 442
MlsI	TGGCCA	1 cut(s)	104
MluNI	TGGCCA	1 cut(s)	104
MnlI	CCTC	3 cut(s)	26, 170, 345
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	2 cut(s)	53, 428
Msp20I	TGGCCA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	352
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	481
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	518, 527
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	2 cut(s)	119, 373
NlaIII	CATG	5 cut(s)	58, 232, 427, 499, 507
NlaIV	GGNNCC	2 cut(s)	221, 375
PagI	TCATGA	1 cut(s)	495
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	221, 375
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	53, 428
SacI	GAGCTC	1 cut(s)	400
SalI	GTCGAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	119, 373
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	400, 442
SgrDI	CGTCGACG	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	53, 428
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SsiI	CCGC	5 cut(s)	111, 196, 224, 299, 392
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	456
TaqI	TCGA	2 cut(s)	182, 260
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TspDTI	ATGAA	3 cut(s)	71, 110, 512
TspGWI	ACGGA	2 cut(s)	200, 390
Vha464I	CTTAAG	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	182
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.