Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014356

Physical Location & Seq

Genomic Coordinates Reverse (-)

13925131 .. 13925709

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011939

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGATTCCCAAAACCTCAAACAGCGTAGGGTTGCCGACGACCCTAACACCACCACGAGCACCGCAGCCACAATGAACAAGAACAACTACCCAAGCAAACGCGACATGAGAATGAAAATGGCCAAACGCGGCCTAAGATCACTAGCCGTGGCGGTTTCGCTCCCGGTGGCTCTCCACCTCATCACTATTTACTTGGGATCGACCGACAGCTACCGCACCACCTCCAAGCCCTTCTGGTTCCCGCCTCTGTGGGGCTTACGTCTGACTTGCTTGGCTTCGAGTTTCTTGATGGGTCTCTCGGCTTGGCTTGTGTGGGCAGAAGGTGGGTTTCACAAGAATCCTGTGGCCTTTCCAGTTTATTTGTCTCAGCTAGTCTTGAGTTTGGCATGGGATCCGATCGTGTTTGGGGCCGGAGCTCCGTGGGTCGGGCTCGTTGTGTGCATGGGGATGTTCGGGGCTCTGGTTGGGTGTTCGAAGGTGTTTCAGGATGTGAATCCGACTGCCTGTGATCTCATGAAGCCTTGTTTGGCTTGGGTTGCTTTTTTGGCCGTTGTAAATCTTAAGCTTGTGTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0020037 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031984 GO:0033013 GO:0033993 GO:0042170 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0071704 GO:0097159 GO:0097305 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04080 ko04214 ko04979 ko05166 map04080 map04214 map04979 map05166

Pfam Domains

Protein Families

TspO_MBR

Protein Analysis

193

Amino Acids

21.14

Weight (kDa)

9.57

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TspO_MBR	PF03073	52 - 191	1.1e-31	TspO/MBR family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47770
fragaria_vesca	FvH4_2g25400
malus_domestica	MD03G1285300.v1.1 MD11G1304700.v1.1
prunus_persica	Prupe.8G258500_v2.0.a1
pyrus_communis	pycom03g22620 pycom11g26650
rosa_chinensis	RchiOBHm_Chr6g0293581
rosa_laevigata	RLG00000011939
rosa_multiflora	Rmu_sc0006269.1_g000004
rosa_roxburghii	Rroxscaffold_7G00174070
rosa_rugosa	Rorug06G0236800
rosa_samantha	Rh6AG349400 Rh6BG356800 Rh6CG363500 Rh6DG350400
rosa_wichuraiana	Rw6G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	102, 129
AciI	CCGC	5 cut(s)	63, 129, 152, 214, 242
AclWI	GGATC	3 cut(s)	205, 386, 399
AcoI	YGGCCR	2 cut(s)	120, 546
AfiI	CCNNNNNNNGG	2 cut(s)	251, 425
AflII	CTTAAG	1 cut(s)	560
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	4 cut(s)	210, 370, 416, 565
AluI	AGCT	4 cut(s)	210, 370, 416, 565
Alw21I	GWGCWC	2 cut(s)	62, 418
Alw26I	GTCTC	2 cut(s)	299, 369
AlwI	GGATC	3 cut(s)	205, 386, 399
AoxI	GGCC	5 cut(s)	120, 130, 345, 408, 546
ApeKI	GCWGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	391
BanII	GRGCYC	3 cut(s)	418, 432, 460
BauI	CACGAG	1 cut(s)	55
Bbv12I	GWGCWC	2 cut(s)	62, 418
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	2 cut(s)	131, 533
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	299, 369
BfaI	CTAG	2 cut(s)	143, 371
BfrI	CTTAAG	1 cut(s)	560
BisI	GCNGC	2 cut(s)	66, 130
BlsI	GCNGC	2 cut(s)	67, 131
Bme1390I	CCNGG	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	3 cut(s)	239, 393, 409
BmrFI	CCNGG	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	1 cut(s)	164
BsaBI	GATNNNNATC	1 cut(s)	492
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	147, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 425
Bse1I	ACTGG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	147, 419
BseGI	GGATG	2 cut(s)	453, 493
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	251, 425
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	2 cut(s)	102, 129
Bsh1285I	CGRYCG	2 cut(s)	204, 399
BshFI	GGCC	5 cut(s)	122, 132, 347, 410, 548
BsiEI	CGRYCG	2 cut(s)	204, 399
BsiHKAI	GWGCWC	2 cut(s)	62, 418
BsiSI	CCGG	2 cut(s)	164, 411
BslI	CCNNNNNNNGG	2 cut(s)	251, 425
BsmAI	GTCTC	2 cut(s)	299, 369
BsnI	GGCC	5 cut(s)	122, 132, 347, 410, 548
Bso31I	GGTCTC	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	473
Bsp1286I	GDGCHC	4 cut(s)	62, 418, 432, 460
Bsp143I	GATC	5 cut(s)	137, 197, 391, 396, 508
BspACI	CCGC	5 cut(s)	63, 129, 152, 214, 242
BspANI	GGCC	5 cut(s)	122, 132, 347, 410, 548
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	2 cut(s)	102, 129
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	239, 393, 409
BspPI	GGATC	3 cut(s)	205, 386, 399
BspT104I	TTCGAA	1 cut(s)	473
BspTI	CTTAAG	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	147, 419
BssMI	GATC	5 cut(s)	137, 197, 391, 396, 508
BssSI	CACGAG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	55
BstAFI	CTTAAG	1 cut(s)	560
BstBI	TTCGAA	1 cut(s)	473
BstDEI	CTNAG	2 cut(s)	134, 366
BstDSI	CCRYGG	2 cut(s)	147, 419
BstF5I	GGATG	2 cut(s)	453, 493
BstFNI	CGCG	2 cut(s)	102, 129
BstKTI	GATC	5 cut(s)	140, 200, 394, 399, 511
BstMAI	GTCTC	2 cut(s)	299, 369
BstMBI	GATC	5 cut(s)	137, 197, 391, 396, 508
BstMCI	CGRYCG	2 cut(s)	204, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 545
BstSCI	CCNGG	1 cut(s)	162
BstUI	CGCG	2 cut(s)	102, 129
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	5 cut(s)	122, 132, 347, 410, 548
BtgI	CCRYGG	2 cut(s)	147, 419
BtsCI	GGATG	2 cut(s)	453, 493
CciI	TCATGA	1 cut(s)	513
Cfr13I	GGNCC	1 cut(s)	408
CviAII	CATG	4 cut(s)	106, 387, 442, 514
DdeI	CTNAG	2 cut(s)	134, 366
DpnI	GATC	5 cut(s)	139, 199, 393, 398, 510
DpnII	GATC	5 cut(s)	137, 197, 391, 396, 508
EaeI	YGGCCR	2 cut(s)	120, 546
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	3 cut(s)	418, 432, 460
Eco31I	GGTCTC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	416
EcoT38I	GRGCYC	3 cut(s)	418, 432, 460
FaeI	CATG	4 cut(s)	109, 390, 445, 517
FaiI	YATR	4 cut(s)	107, 388, 443, 515
FatI	CATG	4 cut(s)	105, 386, 441, 513
FauI	CCCGC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	66, 130
FokI	GGATG	2 cut(s)	460, 500
FriOI	GRGCYC	3 cut(s)	418, 432, 460
Fsp4HI	GCNGC	2 cut(s)	66, 130
FspBI	CTAG	2 cut(s)	143, 371
GluI	GCNGC	2 cut(s)	66, 130
HaeIII	GGCC	5 cut(s)	122, 132, 347, 410, 548
HapII	CCGG	2 cut(s)	164, 411
Hin1II	CATG	4 cut(s)	109, 390, 445, 517
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	3 cut(s)	5, 337, 493
HpaII	CCGG	2 cut(s)	164, 411
Hpy188I	TCNGA	4 cut(s)	264, 396, 498, 578
Hpy188III	TCNNGA	4 cut(s)	286, 376, 485, 514
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	241, 314, 469
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 545
HpyF3I	CTNAG	2 cut(s)	134, 366
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	4 cut(s)	109, 390, 445, 517
Kzo9I	GATC	5 cut(s)	137, 197, 391, 396, 508
LmnI	GCTCC	3 cut(s)	165, 413, 421
LpnPI	CCDG	8 cut(s)	177, 220, 354, 366, 424, 446, 470, 517
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	2 cut(s)	143, 371
MaeII	ACGT	1 cut(s)	259
MalI	GATC	5 cut(s)	139, 199, 393, 398, 510
MboI	GATC	5 cut(s)	137, 197, 391, 396, 508
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	4 cut(s)	62, 418, 432, 460
MlsI	TGGCCA	1 cut(s)	122
MluNI	TGGCCA	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	4 cut(s)	26, 188, 232, 255
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	2 cut(s)	110, 446
Msp20I	TGGCCA	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	164, 411
MspR9I	CCNGG	1 cut(s)	164
MvnI	CGCG	2 cut(s)	102, 129
MwoI	GCNNNNNNNGC	2 cut(s)	536, 545
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	5 cut(s)	137, 197, 391, 396, 508
NlaIII	CATG	4 cut(s)	109, 390, 445, 517
NlaIV	GGNNCC	3 cut(s)	239, 393, 409
NmeAIII	GCCGAG	1 cut(s)	278
NspV	TTCGAA	1 cut(s)	473
PagI	TCATGA	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	5, 337, 493
PkrI	GCNGC	2 cut(s)	67, 131
Ple19I	CGATCG	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	239, 393, 409
PspPI	GGNCC	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	391
PvuI	CGATCG	1 cut(s)	399
RseI	CAYNNNNRTG	2 cut(s)	110, 446
SacI	GAGCTC	1 cut(s)	418
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	2 cut(s)	66, 130
Sau3AI	GATC	5 cut(s)	137, 197, 391, 396, 508
Sau96I	GGNCC	1 cut(s)	408
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	4 cut(s)	62, 418, 432, 460
SfuI	TTCGAA	1 cut(s)	473
SmiMI	CAYNNNNRTG	2 cut(s)	110, 446
SmlI	CTYRAG	2 cut(s)	376, 560
SmoI	CTYRAG	2 cut(s)	376, 560
SsiI	CCGC	5 cut(s)	63, 129, 152, 214, 242
SspMI	CTAG	2 cut(s)	143, 371
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	3 cut(s)	200, 278, 473
TaqII	GACCGA	1 cut(s)	218
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	5, 337, 493
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	89, 128, 530
TspGWI	ACGGA	1 cut(s)	408
Vha464I	CTTAAG	1 cut(s)	560
XspI	CTAG	2 cut(s)	143, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.